RNA–Protein interactions for RNA: ENST00000431283.1

PTPN4-204, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 3

Gene PTPN4, Length 630 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-204ENST00000431283 SASH3O75995 380 aa9.68□□□□□ -0.86
PTPN4-204ENST00000431283 CPB1P15086 417 aa9.68□□□□□ -0.86
PTPN4-204ENST00000431283 BRD2P25440 801 aaKnown RBP9.68□□□□□ -0.86
PTPN4-204ENST00000431283 TARSP26639 723 aaKnown RBP9.68□□□□□ -0.86
PTPN4-204ENST00000431283 COX20Q5RI15 118 aa9.68□□□□□ -0.86
PTPN4-204ENST00000431283 LRFN2Q9ULH4 789 aa9.68□□□□□ -0.86
PTPN4-204ENST00000431283 PTCD1O75127 700 aaKnown RBP9.67□□□□□ -0.86
PTPN4-204ENST00000431283 XYLBO75191 536 aa9.67□□□□□ -0.86
PTPN4-204ENST00000431283 COL9A3Q14050 684 aaPredicted RBP9.67□□□□□ -0.86
PTPN4-204ENST00000431283 ELMSAN1Q6PJG2 1045 aa9.67□□□□□ -0.86
PTPN4-204ENST00000431283 MKNK1Q9BUB5 465 aa9.67□□□□□ -0.86
PTPN4-204ENST00000431283 OCLNQ16625 522 aa9.66□□□□□ -0.86
PTPN4-204ENST00000431283 TMEM164Q5U3C3 297 aa9.66□□□□□ -0.86
PTPN4-204ENST00000431283 COL26A1Q96A83 441 aa9.66□□□□□ -0.86
PTPN4-204ENST00000431283 FAM13BQ9NYF5 915 aa9.66□□□□□ -0.86
PTPN4-204ENST00000431283 GTF3C3Q9Y5Q9 886 aa9.66□□□□□ -0.86
PTPN4-204ENST00000431283 OPLAHO14841 1288 aa9.65□□□□□ -0.86
PTPN4-204ENST00000431283 GRNP28799 593 aaKnown RBP9.65□□□□□ -0.86
PTPN4-204ENST00000431283 MLLT1Q03111 559 aaPredicted RBP9.65□□□□□ -0.86
PTPN4-204ENST00000431283 DOC2BQ14184 412 aa9.65□□□□□ -0.86
PTPN4-204ENST00000431283 CXXC1Q9P0U4 656 aaPredicted RBP9.65□□□□□ -0.86
PTPN4-204ENST00000431283 ZFATQ9P243 1243 aa9.65□□□□□ -0.86
PTPN4-204ENST00000431283 NAGPAQ9UK23 515 aa9.65□□□□□ -0.86
PTPN4-204ENST00000431283 USP20Q9Y2K6 914 aa9.65□□□□□ -0.86
PTPN4-204ENST00000431283 A0A0A0MRY4 1105 aa9.64□□□□□ -0.87
PTPN4-204ENST00000431283 PSAPP07602 524 aa9.64□□□□□ -0.87
PTPN4-204ENST00000431283 ELNP15502 786 aa9.64□□□□□ -0.87
PTPN4-204ENST00000431283 AFF1P51825 1210 aaKnown RBP9.64□□□□□ -0.87
PTPN4-204ENST00000431283 GRIK4Q16099 956 aa9.64□□□□□ -0.87
PTPN4-204ENST00000431283 TRPM4Q8TD43 1214 aa9.64□□□□□ -0.87
PTPN4-204ENST00000431283 FRRS1LQ9P0K9 344 aa9.64□□□□□ -0.87
PTPN4-204ENST00000431283 LOC100996750A0A140TA64 210 aa9.63□□□□□ -0.87
PTPN4-204ENST00000431283 C9orf172C9J069 976 aa9.63□□□□□ -0.87
PTPN4-204ENST00000431283 EGFRP00533 1210 aa9.63□□□□□ -0.87
PTPN4-204ENST00000431283 EIF2AK2P19525 551 aaKnown RBP9.63□□□□□ -0.87
PTPN4-204ENST00000431283 SRPK2P78362 688 aaKnown RBP9.63□□□□□ -0.87
PTPN4-204ENST00000431283 GPLD1P80108 840 aa9.63□□□□□ -0.87
PTPN4-204ENST00000431283 FAM69CQ0P6D2 419 aa9.63□□□□□ -0.87
PTPN4-204ENST00000431283 NAA30Q147X3 362 aaPredicted RBP9.63□□□□□ -0.87
PTPN4-204ENST00000431283 KRTAP4-6Q9BYQ5 205 aa9.63□□□□□ -0.87
PTPN4-204ENST00000431283 RBSNQ9H1K0 784 aa9.63□□□□□ -0.87
PTPN4-204ENST00000431283 NRLP54845 237 aa9.62□□□□□ -0.87
PTPN4-204ENST00000431283 DMRTC2Q8IXT2 367 aaPredicted RBP9.62□□□□□ -0.87
PTPN4-204ENST00000431283 PIK3R5Q8WYR1 880 aa9.62□□□□□ -0.87
PTPN4-204ENST00000431283 CLP1Q92989 425 aaKnown RBP9.62□□□□□ -0.87
PTPN4-204ENST00000431283 SAP130Q9H0E3 1048 aa9.62□□□□□ -0.87
PTPN4-204ENST00000431283 TLR7Q9NYK1 1049 aaKnown RBP9.62□□□□□ -0.87
PTPN4-204ENST00000431283 ARID3CA6NKF2 412 aa9.61□□□□□ -0.87
PTPN4-204ENST00000431283 NRG1Q02297 640 aaPredicted RBP9.61□□□□□ -0.87
PTPN4-204ENST00000431283 PLAURQ03405 335 aa9.61□□□□□ -0.87
PTPN4-204ENST00000431283 PERM1Q5SV97 790 aa9.61□□□□□ -0.87
PTPN4-204ENST00000431283 WFDC8Q8IUA0 241 aa9.61□□□□□ -0.87
PTPN4-204ENST00000431283 ETFBKMTQ8IXQ9 262 aa9.61□□□□□ -0.87
PTPN4-204ENST00000431283 GHRHP01286 108 aa9.6□□□□□ -0.87
PTPN4-204ENST00000431283 MSL1Q68DK7 614 aa9.6□□□□□ -0.87
PTPN4-204ENST00000431283 HFE2Q6ZVN8 426 aa9.6□□□□□ -0.87
PTPN4-204ENST00000431283 SMG9Q9H0W8 520 aaKnown RBP9.6□□□□□ -0.87
PTPN4-204ENST00000431283 SEMA6BQ9H3T3 888 aa9.6□□□□□ -0.87
PTPN4-204ENST00000431283 USP21Q9UK80 565 aa9.6□□□□□ -0.87
PTPN4-204ENST00000431283 FNDC3AQ9Y2H6 1198 aaKnown RBP9.6□□□□□ -0.87
PTPN4-204ENST00000431283 ZBTB42B2RXF5 422 aa9.59□□□□□ -0.87
PTPN4-204ENST00000431283 UBAP1LF5GYI3 381 aa9.59□□□□□ -0.87
PTPN4-204ENST00000431283 ATP2B4P23634 1241 aa9.59□□□□□ -0.87
PTPN4-204ENST00000431283 LPIN3Q9BQK8 851 aa9.59□□□□□ -0.87
PTPN4-204ENST00000431283 NLRP13Q86W25 1043 aa9.58□□□□□ -0.88
PTPN4-204ENST00000431283 FMR1NBQ8N0W7 255 aaPredicted RBP9.58□□□□□ -0.88
PTPN4-204ENST00000431283 DTWD1Q8N5C7 304 aa9.58□□□□□ -0.88
PTPN4-204ENST00000431283 ABTB2Q8N961 1025 aa9.58□□□□□ -0.88
PTPN4-204ENST00000431283 TTC9Q92623 222 aa9.58□□□□□ -0.88
PTPN4-204ENST00000431283 STIM2Q9P246 746 aa9.58□□□□□ -0.88
PTPN4-204ENST00000431283 KCNMB2Q9Y691 235 aa9.58□□□□□ -0.88
PTPN4-204ENST00000431283 LOC102724428A0A0B4J2F2 783 aa9.57□□□□□ -0.88
PTPN4-204ENST00000431283 SIK1P57059 783 aa9.57□□□□□ -0.88
PTPN4-204ENST00000431283 LENG1Q96BZ8 264 aaPredicted RBP9.57□□□□□ -0.88
PTPN4-204ENST00000431283 NSUN5Q96P11 429 aaKnown RBP9.57□□□□□ -0.88
PTPN4-204ENST00000431283 MMP20O60882 483 aa9.56□□□□□ -0.88
PTPN4-204ENST00000431283 SOX18P35713 384 aa9.56□□□□□ -0.88
PTPN4-204ENST00000431283 ZAP70P43403 619 aa9.56□□□□□ -0.88
PTPN4-204ENST00000431283 CAPN12Q6ZSI9 719 aa9.56□□□□□ -0.88
PTPN4-204ENST00000431283 PLD4Q96BZ4 506 aa9.56□□□□□ -0.88
PTPN4-204ENST00000431283 TNFRSF10BO14763 440 aa9.55□□□□□ -0.88
PTPN4-204ENST00000431283 SELPP16109 830 aa9.55□□□□□ -0.88
PTPN4-204ENST00000431283 TTC39BQ5VTQ0 682 aaPredicted RBP9.55□□□□□ -0.88
PTPN4-204ENST00000431283 TXNRD3Q86VQ6 643 aa9.55□□□□□ -0.88
PTPN4-204ENST00000431283 SPACA7Q96KW9 195 aa9.55□□□□□ -0.88
PTPN4-204ENST00000431283 TPSG1Q9NRR2 321 aa9.55□□□□□ -0.88
PTPN4-204ENST00000431283 J3QW42 95 aa9.54□□□□□ -0.88
PTPN4-204ENST00000431283 MBTPS1Q14703 1052 aa9.54□□□□□ -0.88
PTPN4-204ENST00000431283 SHISA2Q6UWI4 295 aa9.54□□□□□ -0.88
PTPN4-204ENST00000431283 GPR152Q8TDT2 470 aa9.54□□□□□ -0.88
PTPN4-204ENST00000431283 ADGRE1Q14246 886 aa9.53□□□□□ -0.88
PTPN4-204ENST00000431283 GDF6Q6KF10 455 aaPredicted RBP9.53□□□□□ -0.88
PTPN4-204ENST00000431283 FBXO11Q86XK2 927 aa9.53□□□□□ -0.88
PTPN4-204ENST00000431283 TTC16Q8NEE8 873 aa9.53□□□□□ -0.88
PTPN4-204ENST00000431283 PCSK2P16519 638 aa9.52□□□□□ -0.89
PTPN4-204ENST00000431283 SCNN1AP37088 669 aa9.52□□□□□ -0.89
PTPN4-204ENST00000431283 HYAL2Q12891 473 aa9.52□□□□□ -0.89
PTPN4-204ENST00000431283 TRIP4Q15650 581 aaPredicted RBP9.52□□□□□ -0.89
PTPN4-204ENST00000431283 GRIK5Q16478 980 aa9.52□□□□□ -0.89
PTPN4-204ENST00000431283 CCDC82Q8N4S0 544 aa9.52□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms