RNA–Protein interactions for RNA: ENST00000428842.1

HMGCLL1-206, Transcript of 3-hydroxymethyl-3-methylglutaryl-CoA lyase like 1, humanhuman

TSL 1 (best) BASIC

Gene HMGCLL1, Length 2,437 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCLL1-206ENST00000428842 TLR7Q9NYK1 1049 aaKnown RBP11.85□□□□□ -0.51
HMGCLL1-206ENST00000428842 SH3TC1Q8TE82 1336 aa11.84□□□□□ -0.51
HMGCLL1-206ENST00000428842 SERPINB2P05120 415 aa11.84□□□□□ -0.51
HMGCLL1-206ENST00000428842 RFX5P48382 616 aaPredicted RBP11.84□□□□□ -0.51
HMGCLL1-206ENST00000428842 PRR5LQ6MZQ0 368 aa11.84□□□□□ -0.51
HMGCLL1-206ENST00000428842 CENPQQ7L2Z9 268 aaPredicted RBP11.84□□□□□ -0.51
HMGCLL1-206ENST00000428842 SSH3Q8TE77 659 aa11.84□□□□□ -0.51
HMGCLL1-206ENST00000428842 POLRMTO00411 1230 aaKnown RBP11.84□□□□□ -0.51
HMGCLL1-206ENST00000428842 SASH1O94885 1247 aa11.84□□□□□ -0.51
HMGCLL1-206ENST00000428842 MAP4K4O95819 1239 aaPredicted RBP11.84□□□□□ -0.51
HMGCLL1-206ENST00000428842 ITGA6P23229 1130 aa11.84□□□□□ -0.51
HMGCLL1-206ENST00000428842 OS9Q13438 667 aaPredicted RBP11.84□□□□□ -0.51
HMGCLL1-206ENST00000428842 DCTPP1Q9H773 170 aa11.84□□□□□ -0.51
HMGCLL1-206ENST00000428842 PPP1R1BQ9UD71 204 aaPredicted RBP11.84□□□□□ -0.51
HMGCLL1-206ENST00000428842 ZNF652Q9Y2D9 606 aa11.84□□□□□ -0.51
HMGCLL1-206ENST00000428842 SPEF2Q9C093 1822 aa11.84□□□□□ -0.51
HMGCLL1-206ENST00000428842 TNRC6CQ9HCJ0 1690 aaKnown RBP11.83□□□□□ -0.51
HMGCLL1-206ENST00000428842 DDX60Q8IY21 1712 aaKnown RBP11.83□□□□□ -0.52
HMGCLL1-206ENST00000428842 CASZ1Q86V15 1759 aa11.83□□□□□ -0.52
HMGCLL1-206ENST00000428842 TAF5LO75529 589 aa11.83□□□□□ -0.52
HMGCLL1-206ENST00000428842 CTSWP56202 376 aa11.83□□□□□ -0.52
HMGCLL1-206ENST00000428842 TRIM28Q13263 835 aaKnown RBP11.83□□□□□ -0.52
HMGCLL1-206ENST00000428842 RPAP2Q8IXW5 612 aaPredicted RBP11.83□□□□□ -0.52
HMGCLL1-206ENST00000428842 SMC5Q8IY18 1101 aa11.83□□□□□ -0.52
HMGCLL1-206ENST00000428842 KLHL34Q8N239 644 aa11.83□□□□□ -0.52
HMGCLL1-206ENST00000428842 ZNF219Q9P2Y4 722 aaPredicted RBP11.83□□□□□ -0.52
HMGCLL1-206ENST00000428842 TM4SF1P30408 202 aa11.82□□□□□ -0.52
HMGCLL1-206ENST00000428842 POLA2Q14181 598 aa11.82□□□□□ -0.52
HMGCLL1-206ENST00000428842 CLEC4GQ6UXB4 293 aa11.82□□□□□ -0.52
HMGCLL1-206ENST00000428842 CELF1Q92879 486 aaKnown RBP11.82□□□□□ -0.52
HMGCLL1-206ENST00000428842 CCDC8Q9H0W5 538 aaPredicted RBP11.82□□□□□ -0.52
HMGCLL1-206ENST00000428842 TFCP2Q12800 502 aa11.82□□□□□ -0.52
HMGCLL1-206ENST00000428842 HSP90AB3PQ58FF7 597 aa11.82□□□□□ -0.52
HMGCLL1-206ENST00000428842 CNBD1Q8NA66 436 aa11.82□□□□□ -0.52
HMGCLL1-206ENST00000428842 TIMM10P62072 90 aa11.81□□□□□ -0.52
HMGCLL1-206ENST00000428842 RABL6Q3YEC7 729 aaPredicted RBP11.81□□□□□ -0.52
HMGCLL1-206ENST00000428842 GPR101Q96P66 508 aaPredicted RBP11.81□□□□□ -0.52
HMGCLL1-206ENST00000428842 CHRNA5P30532 468 aa11.81□□□□□ -0.52
HMGCLL1-206ENST00000428842 CHD1LQ86WJ1 897 aa11.81□□□□□ -0.52
HMGCLL1-206ENST00000428842 MYH3P11055 1940 aa11.81□□□□□ -0.52
HMGCLL1-206ENST00000428842 NUCB1Q02818 461 aa11.8□□□□□ -0.52
HMGCLL1-206ENST00000428842 ATG9AQ7Z3C6 839 aa11.8□□□□□ -0.52
HMGCLL1-206ENST00000428842 PDE8AO60658 829 aa11.8□□□□□ -0.52
HMGCLL1-206ENST00000428842 CHGBP05060 677 aa11.8□□□□□ -0.52
HMGCLL1-206ENST00000428842 CCDC57Q2TAC2 916 aa11.8□□□□□ -0.52
HMGCLL1-206ENST00000428842 TPTE2Q6XPS3 522 aa11.8□□□□□ -0.52
HMGCLL1-206ENST00000428842 LAMB2P55268 1798 aa11.79□□□□□ -0.52
HMGCLL1-206ENST00000428842 ADRA2BP18089 450 aa11.79□□□□□ -0.52
HMGCLL1-206ENST00000428842 IFIT5Q13325 482 aaKnown RBP11.79□□□□□ -0.52
HMGCLL1-206ENST00000428842 RHPN1Q8TCX5 695 aa11.79□□□□□ -0.52
HMGCLL1-206ENST00000428842 CSF1RP07333 972 aa11.79□□□□□ -0.52
HMGCLL1-206ENST00000428842 MTX1Q13505 466 aa11.79□□□□□ -0.52
HMGCLL1-206ENST00000428842 PARP10Q53GL7 1025 aa11.79□□□□□ -0.52
HMGCLL1-206ENST00000428842 TAF7LQ5H9L4 462 aa11.79□□□□□ -0.52
HMGCLL1-206ENST00000428842 EAF2Q96CJ1 260 aaPredicted RBP11.79□□□□□ -0.52
HMGCLL1-206ENST00000428842 EDC3Q96F86 508 aaKnown RBP11.79□□□□□ -0.52
HMGCLL1-206ENST00000428842 IBTKQ9P2D0 1353 aaPredicted RBP11.78□□□□□ -0.52
HMGCLL1-206ENST00000428842 LDHAL6AQ6ZMR3 332 aa11.78□□□□□ -0.52
HMGCLL1-206ENST00000428842 HMMRO75330 724 aa11.78□□□□□ -0.52
HMGCLL1-206ENST00000428842 KLRK1P26718 216 aa11.78□□□□□ -0.52
HMGCLL1-206ENST00000428842 ADORA1P30542 326 aa11.78□□□□□ -0.52
HMGCLL1-206ENST00000428842 LRRCC1Q9C099 1032 aa11.78□□□□□ -0.52
HMGCLL1-206ENST00000428842 IQSEC3Q9UPP2 1182 aaPredicted RBP11.78□□□□□ -0.52
HMGCLL1-206ENST00000428842 PI16Q6UXB8 463 aa11.77□□□□□ -0.52
HMGCLL1-206ENST00000428842 NEUROD6Q96NK8 337 aa11.77□□□□□ -0.52
HMGCLL1-206ENST00000428842 CACNA1SQ13698 1873 aa11.77□□□□□ -0.53
HMGCLL1-206ENST00000428842 CDHR2Q9BYE9 1310 aa11.77□□□□□ -0.53
HMGCLL1-206ENST00000428842 G3BP1Q13283 466 aaKnown RBP eCLIP11.77□□□□□ -0.53
HMGCLL1-206ENST00000428842 SLFNL1Q499Z3 407 aa11.77□□□□□ -0.53
HMGCLL1-206ENST00000428842 AACSQ86V21 672 aa11.77□□□□□ -0.53
HMGCLL1-206ENST00000428842 CNNM1Q9NRU3 951 aa11.77□□□□□ -0.53
HMGCLL1-206ENST00000428842 JAG2Q9Y219 1238 aa11.77□□□□□ -0.53
HMGCLL1-206ENST00000428842 ANKRD31Q8N7Z5 1873 aa11.77□□□□□ -0.53
HMGCLL1-206ENST00000428842 COL24A1Q17RW2 1714 aa11.76□□□□□ -0.53
HMGCLL1-206ENST00000428842 A0A0G2JLW4 131 aa11.76□□□□□ -0.53
HMGCLL1-206ENST00000428842 PLEKHM2Q8IWE5 1019 aa11.76□□□□□ -0.53
HMGCLL1-206ENST00000428842 NLGN1Q8N2Q7 840 aa11.76□□□□□ -0.53
HMGCLL1-206ENST00000428842 NLRP3Q96P20 1036 aa11.76□□□□□ -0.53
HMGCLL1-206ENST00000428842 CHMP4BQ9H444 224 aaKnown RBP11.76□□□□□ -0.53
HMGCLL1-206ENST00000428842 RGPD3A6NKT7 1758 aaPredicted RBP11.76□□□□□ -0.53
HMGCLL1-206ENST00000428842 RGPD4Q7Z3J3 1758 aa11.76□□□□□ -0.53
HMGCLL1-206ENST00000428842 GSPT1P15170 499 aaKnown RBP11.76□□□□□ -0.53
HMGCLL1-206ENST00000428842 GCC1Q96CN9 775 aa11.76□□□□□ -0.53
HMGCLL1-206ENST00000428842 DBNDD2Q9BQY9 259 aa11.76□□□□□ -0.53
HMGCLL1-206ENST00000428842 PARP3Q9Y6F1 533 aa11.76□□□□□ -0.53
HMGCLL1-206ENST00000428842 ANKRD18BA2A2Z9 1011 aa11.75□□□□□ -0.53
HMGCLL1-206ENST00000428842 SEC24BO95487 1268 aa11.75□□□□□ -0.53
HMGCLL1-206ENST00000428842 ZNF622Q969S3 477 aaKnown RBP eCLIP11.75□□□□□ -0.53
HMGCLL1-206ENST00000428842 PLA2G12BQ9BX93 195 aa11.75□□□□□ -0.53
HMGCLL1-206ENST00000428842 COPRSQ9NQ92 184 aa11.75□□□□□ -0.53
HMGCLL1-206ENST00000428842 DBNLQ9UJU6 430 aaKnown RBP11.75□□□□□ -0.53
HMGCLL1-206ENST00000428842 EYA2O00167 538 aa11.74□□□□□ -0.53
HMGCLL1-206ENST00000428842 CCDC152Q4G0S7 254 aa11.74□□□□□ -0.53
HMGCLL1-206ENST00000428842 METTL24Q5JXM2 366 aa11.74□□□□□ -0.53
HMGCLL1-206ENST00000428842 TXNRD3Q86VQ6 643 aa11.74□□□□□ -0.53
HMGCLL1-206ENST00000428842 SNRKQ9NRH2 765 aa11.74□□□□□ -0.53
HMGCLL1-206ENST00000428842 NOP58Q9Y2X3 529 aaKnown RBP11.74□□□□□ -0.53
HMGCLL1-206ENST00000428842 RIPOR2Q9Y4F9 1068 aa11.74□□□□□ -0.53
HMGCLL1-206ENST00000428842 CCDC125Q86Z20 511 aa11.74□□□□□ -0.53
HMGCLL1-206ENST00000428842 MPHOSPH8Q99549 860 aa11.74□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms