RNA–Protein interactions for RNA: ENST00000428696.6

SGCE-204, Transcript of sarcoglycan epsilon, humanhuman

TSL 1 (best) BASIC

Gene SGCE, Length 1,409 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SGCE-204ENST00000428696 USP44Q9H0E7 712 aa18.32■□□□□ 0.52
SGCE-204ENST00000428696 UBTFL1P0CB47 393 aaPredicted RBP18.32■□□□□ 0.52
SGCE-204ENST00000428696 HOXA10P31260 410 aaPredicted RBP18.32■□□□□ 0.52
SGCE-204ENST00000428696 PANK1Q8TE04 598 aa18.32■□□□□ 0.52
SGCE-204ENST00000428696 SEC31BQ9NQW1 1179 aa18.32■□□□□ 0.52
SGCE-204ENST00000428696 ANKRD31Q8N7Z5 1873 aa18.31■□□□□ 0.52
SGCE-204ENST00000428696 KIF13BQ9NQT8 1826 aa18.31■□□□□ 0.52
SGCE-204ENST00000428696 PPEF1O14829 653 aaPredicted RBP18.31■□□□□ 0.52
SGCE-204ENST00000428696 CASP7P55210 303 aa18.31■□□□□ 0.52
SGCE-204ENST00000428696 INTS3Q68E01 1043 aaKnown RBP18.31■□□□□ 0.52
SGCE-204ENST00000428696 LMBR1LQ6UX01 489 aa18.31■□□□□ 0.52
SGCE-204ENST00000428696 OLFM4Q6UX06 510 aa18.31■□□□□ 0.52
SGCE-204ENST00000428696 TTLL11Q8NHH1 800 aa18.31■□□□□ 0.52
SGCE-204ENST00000428696 SUCLG2Q96I99 432 aa18.31■□□□□ 0.52
SGCE-204ENST00000428696 ABCC4O15439 1325 aa18.3■□□□□ 0.52
SGCE-204ENST00000428696 BBOX1O75936 387 aa18.3■□□□□ 0.52
SGCE-204ENST00000428696 MS4A1P11836 297 aa18.3■□□□□ 0.52
SGCE-204ENST00000428696 GREM2Q9H772 168 aa18.3■□□□□ 0.52
SGCE-204ENST00000428696 RLBP1P12271 317 aa18.29■□□□□ 0.52
SGCE-204ENST00000428696 FOXO4P98177 505 aa18.29■□□□□ 0.52
SGCE-204ENST00000428696 GRAPQ13588 217 aa18.29■□□□□ 0.52
SGCE-204ENST00000428696 TAF7LQ5H9L4 462 aa18.29■□□□□ 0.52
SGCE-204ENST00000428696 EPHA10Q5JZY3 1008 aa18.29■□□□□ 0.52
SGCE-204ENST00000428696 GRAPLQ8TC17 118 aaPredicted RBP18.29■□□□□ 0.52
SGCE-204ENST00000428696 CELF1Q92879 486 aaKnown RBP18.29■□□□□ 0.52
SGCE-204ENST00000428696 MEIS3Q99687 375 aa18.29■□□□□ 0.52
SGCE-204ENST00000428696 TNRC6CQ9HCJ0 1690 aaKnown RBP18.29■□□□□ 0.52
SGCE-204ENST00000428696 RIC1Q4ADV7 1423 aa18.28■□□□□ 0.52
SGCE-204ENST00000428696 RPS8P62241 208 aaKnown RBP18.28■□□□□ 0.52
SGCE-204ENST00000428696 ANKRD18AQ8IVF6 992 aa18.28■□□□□ 0.52
SGCE-204ENST00000428696 BICC1Q9H694 974 aaKnown RBP18.28■□□□□ 0.52
SGCE-204ENST00000428696 ITGA6P23229 1130 aa18.27■□□□□ 0.52
SGCE-204ENST00000428696 IFIT5Q13325 482 aaKnown RBP18.27■□□□□ 0.52
SGCE-204ENST00000428696 CCDC57Q2TAC2 916 aa18.27■□□□□ 0.52
SGCE-204ENST00000428696 FAM161AQ3B820 660 aa18.27■□□□□ 0.52
SGCE-204ENST00000428696 CDC5LQ99459 802 aaKnown RBP18.27■□□□□ 0.52
SGCE-204ENST00000428696 UTRNP46939 3433 aa18.27■□□□□ 0.51
SGCE-204ENST00000428696 ANKRD18BA2A2Z9 1011 aa18.26■□□□□ 0.51
SGCE-204ENST00000428696 GNAI3P08754 354 aa18.26■□□□□ 0.51
SGCE-204ENST00000428696 CCDC93Q567U6 631 aa18.26■□□□□ 0.51
SGCE-204ENST00000428696 SOGA3Q5TF21 947 aa18.26■□□□□ 0.51
SGCE-204ENST00000428696 PLA2G12BQ9BX93 195 aa18.26■□□□□ 0.51
SGCE-204ENST00000428696 HDAC5Q9UQL6 1122 aa18.26■□□□□ 0.51
SGCE-204ENST00000428696 COG6Q9Y2V7 657 aa18.26■□□□□ 0.51
SGCE-204ENST00000428696 LRRFIP2Q9Y608 721 aaKnown RBP18.26■□□□□ 0.51
SGCE-204ENST00000428696 UTYO14607 1347 aa18.25■□□□□ 0.51
SGCE-204ENST00000428696 CSF1RP07333 972 aa18.25■□□□□ 0.51
SGCE-204ENST00000428696 COL11A2P13942 1736 aaPredicted RBP18.25■□□□□ 0.51
SGCE-204ENST00000428696 IGHMBP2P38935 993 aaKnown RBP18.25■□□□□ 0.51
SGCE-204ENST00000428696 RASSF7Q02833 373 aa18.25■□□□□ 0.51
SGCE-204ENST00000428696 SLC51AQ86UW1 340 aa18.25■□□□□ 0.51
SGCE-204ENST00000428696 KIAA1551Q9HCM1 1747 aa18.25■□□□□ 0.51
SGCE-204ENST00000428696 ATP6V0A2Q9Y487 856 aa18.25■□□□□ 0.51
SGCE-204ENST00000428696 C20orf194Q5TEA3 1177 aa18.24■□□□□ 0.51
SGCE-204ENST00000428696 RTKN2Q8IZC4 609 aa18.24■□□□□ 0.51
SGCE-204ENST00000428696 C7orf43Q8WVR3 580 aa18.24■□□□□ 0.51
SGCE-204ENST00000428696 KAZALD1Q96I82 304 aa18.24■□□□□ 0.51
SGCE-204ENST00000428696 MPHOSPH8Q99549 860 aa18.24■□□□□ 0.51
SGCE-204ENST00000428696 SP8Q8IXZ3 490 aa18.23■□□□□ 0.51
SGCE-204ENST00000428696 ZNF594Q96JF6 807 aaPredicted RBP18.23■□□□□ 0.51
SGCE-204ENST00000428696 NSFL1CQ9UNZ2 370 aaKnown RBP18.23■□□□□ 0.51
SGCE-204ENST00000428696 SLX4Q8IY92 1834 aa18.23■□□□□ 0.51
SGCE-204ENST00000428696 DDX60Q8IY21 1712 aaKnown RBP18.23■□□□□ 0.51
SGCE-204ENST00000428696 GNAI2P04899 355 aa18.23■□□□□ 0.51
SGCE-204ENST00000428696 DPP8Q6V1X1 898 aaPredicted RBP18.23■□□□□ 0.51
SGCE-204ENST00000428696 ANKIB1Q9P2G1 1089 aa18.23■□□□□ 0.51
SGCE-204ENST00000428696 RRP1P56182 461 aaKnown RBP18.22■□□□□ 0.51
SGCE-204ENST00000428696 CC2D2BQ6DHV5 1058 aa18.22■□□□□ 0.51
SGCE-204ENST00000428696 MPNDQ8N594 471 aa18.22■□□□□ 0.51
SGCE-204ENST00000428696 TAOK3Q9H2K8 898 aa18.22■□□□□ 0.51
SGCE-204ENST00000428696 C1orf115Q9H7X2 142 aa18.22■□□□□ 0.51
SGCE-204ENST00000428696 TMC4Q7Z404 712 aa18.21■□□□□ 0.51
SGCE-204ENST00000428696 ANKRD44Q8N8A2 993 aa18.21■□□□□ 0.51
SGCE-204ENST00000428696 ZNF277Q9NRM2 450 aaPredicted RBP18.21■□□□□ 0.51
SGCE-204ENST00000428696 CNNM1Q9NRU3 951 aa18.21■□□□□ 0.51
SGCE-204ENST00000428696 SUPT16HQ9Y5B9 1047 aaKnown RBP18.21■□□□□ 0.51
SGCE-204ENST00000428696 C6orf229H3BNL8 230 aa18.2■□□□□ 0.5
SGCE-204ENST00000428696 NFKBIEO00221 500 aa18.2■□□□□ 0.5
SGCE-204ENST00000428696 ZBTB7BO15156 539 aaPredicted RBP18.2■□□□□ 0.5
SGCE-204ENST00000428696 PDE3AQ14432 1141 aa18.2■□□□□ 0.5
SGCE-204ENST00000428696 MVPQ14764 893 aaKnown RBP18.2■□□□□ 0.5
SGCE-204ENST00000428696 C9orf131Q5VYM1 1079 aa18.2■□□□□ 0.5
SGCE-204ENST00000428696 LDHAL6AQ6ZMR3 332 aa18.2■□□□□ 0.5
SGCE-204ENST00000428696 RNF181Q9P0P0 153 aa18.2■□□□□ 0.5
SGCE-204ENST00000428696 CACNA1SQ13698 1873 aa18.19■□□□□ 0.5
SGCE-204ENST00000428696 GPSM2P81274 684 aa18.19■□□□□ 0.5
SGCE-204ENST00000428696 FKBP4Q02790 459 aaKnown RBP eCLIP18.19■□□□□ 0.5
SGCE-204ENST00000428696 KLHDC4Q8TBB5 520 aa18.19■□□□□ 0.5
SGCE-204ENST00000428696 LAMB2P55268 1798 aa18.19■□□□□ 0.5
SGCE-204ENST00000428696 DLEC1Q9Y238 1755 aa18.18■□□□□ 0.5
SGCE-204ENST00000428696 RABL6Q3YEC7 729 aaPredicted RBP18.18■□□□□ 0.5
SGCE-204ENST00000428696 HELBQ8NG08 1087 aaPredicted RBP18.18■□□□□ 0.5
SGCE-204ENST00000428696 BSDC1Q9NW68 430 aaPredicted RBP18.18■□□□□ 0.5
SGCE-204ENST00000428696 DDX19BQ9UMR2 479 aa18.18■□□□□ 0.5
SGCE-204ENST00000428696 MINPP1Q9UNW1 487 aa18.18■□□□□ 0.5
SGCE-204ENST00000428696 RTL9Q8NET4 1388 aa18.18■□□□□ 0.5
SGCE-204ENST00000428696 TAF1P21675 1872 aa18.17■□□□□ 0.5
SGCE-204ENST00000428696 RIMBP2O15034 1052 aa18.17■□□□□ 0.5
SGCE-204ENST00000428696 SRGAP3O43295 1099 aa18.17■□□□□ 0.5
SGCE-204ENST00000428696 LMNB1P20700 586 aa18.17■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms