RNA–Protein interactions for RNA: ENST00000428643.1

HMGA1P4-201, Transcript of high mobility group AT-hook 1 pseudogene 4, humanhuman

TSL 2 BASIC

Gene HMGA1P4, Length 334 nt, Biotype antisense RNA, Subcellular localisation Cytoplasm .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P4-201ENST00000428643 C3orf67Q6ZVT6 689 aa9.85□□□□□ -0.83
HMGA1P4-201ENST00000428643 SIRT2Q8IXJ6 389 aa9.85□□□□□ -0.83
HMGA1P4-201ENST00000428643 ATF5Q9Y2D1 282 aaPredicted RBP9.85□□□□□ -0.83
HMGA1P4-201ENST00000428643 RIC1Q4ADV7 1423 aa9.84□□□□□ -0.83
HMGA1P4-201ENST00000428643 ATP8B2P98198 1209 aa9.84□□□□□ -0.83
HMGA1P4-201ENST00000428643 OS9Q13438 667 aaPredicted RBP9.84□□□□□ -0.83
HMGA1P4-201ENST00000428643 SLC10A5Q5PT55 438 aa9.84□□□□□ -0.83
HMGA1P4-201ENST00000428643 TTLL11Q8NHH1 800 aa9.84□□□□□ -0.83
HMGA1P4-201ENST00000428643 NLRP3Q96P20 1036 aa9.84□□□□□ -0.83
HMGA1P4-201ENST00000428643 GREM2Q9H772 168 aa9.84□□□□□ -0.83
HMGA1P4-201ENST00000428643 IFIT5Q13325 482 aaKnown RBP9.83□□□□□ -0.84
HMGA1P4-201ENST00000428643 POLA2Q14181 598 aa9.83□□□□□ -0.84
HMGA1P4-201ENST00000428643 CCDC57Q2TAC2 916 aa9.83□□□□□ -0.84
HMGA1P4-201ENST00000428643 SSH3Q8TE77 659 aa9.83□□□□□ -0.84
HMGA1P4-201ENST00000428643 RPGRQ92834 1020 aaKnown RBP9.83□□□□□ -0.84
HMGA1P4-201ENST00000428643 BRIP1Q9BX63 1249 aa9.83□□□□□ -0.84
HMGA1P4-201ENST00000428643 TNRC6CQ9HCJ0 1690 aaKnown RBP9.83□□□□□ -0.84
HMGA1P4-201ENST00000428643 C10orf71Q711Q0 1435 aa9.82□□□□□ -0.84
HMGA1P4-201ENST00000428643 ANKRD18BA2A2Z9 1011 aa9.82□□□□□ -0.84
HMGA1P4-201ENST00000428643 APBB1O00213 710 aa9.82□□□□□ -0.84
HMGA1P4-201ENST00000428643 SURF6O75683 361 aaKnown RBP9.82□□□□□ -0.84
HMGA1P4-201ENST00000428643 IGHDP01880 384 aa9.82□□□□□ -0.84
HMGA1P4-201ENST00000428643 CSF1RP07333 972 aa9.82□□□□□ -0.84
HMGA1P4-201ENST00000428643 ITGA6P23229 1130 aa9.82□□□□□ -0.84
HMGA1P4-201ENST00000428643 SF3B3Q15393 1217 aaKnown RBP9.82□□□□□ -0.84
HMGA1P4-201ENST00000428643 DDX46Q7L014 1031 aaKnown RBP9.82□□□□□ -0.84
HMGA1P4-201ENST00000428643 CENPQQ7L2Z9 268 aaPredicted RBP9.82□□□□□ -0.84
HMGA1P4-201ENST00000428643 KLHL34Q8N239 644 aa9.82□□□□□ -0.84
HMGA1P4-201ENST00000428643 KLHDC4Q8TBB5 520 aa9.82□□□□□ -0.84
HMGA1P4-201ENST00000428643 SIL1Q9H173 461 aa9.82□□□□□ -0.84
HMGA1P4-201ENST00000428643 PA2G4Q9UQ80 394 aaKnown RBP9.82□□□□□ -0.84
HMGA1P4-201ENST00000428643 EXOC6BQ9Y2D4 811 aa9.82□□□□□ -0.84
HMGA1P4-201ENST00000428643 RTL9Q8NET4 1388 aa9.82□□□□□ -0.84
HMGA1P4-201ENST00000428643 LAMB2P55268 1798 aa9.82□□□□□ -0.84
HMGA1P4-201ENST00000428643 PDE6BP35913 854 aa9.81□□□□□ -0.84
HMGA1P4-201ENST00000428643 ZNF594Q96JF6 807 aaPredicted RBP9.81□□□□□ -0.84
HMGA1P4-201ENST00000428643 CDC5LQ99459 802 aaKnown RBP9.81□□□□□ -0.84
HMGA1P4-201ENST00000428643 BCL11AQ9H165 835 aa9.81□□□□□ -0.84
HMGA1P4-201ENST00000428643 SPON1Q9HCB6 807 aa9.81□□□□□ -0.84
HMGA1P4-201ENST00000428643 PPP1R1BQ9UD71 204 aaPredicted RBP9.81□□□□□ -0.84
HMGA1P4-201ENST00000428643 ZBTB47Q9UFB7 747 aaPredicted RBP9.81□□□□□ -0.84
HMGA1P4-201ENST00000428643 DDX60Q8IY21 1712 aaKnown RBP9.81□□□□□ -0.84
HMGA1P4-201ENST00000428643 KDM2BQ8NHM5 1336 aa9.81□□□□□ -0.84
HMGA1P4-201ENST00000428643 NRXN2Q9P2S2 1712 aa9.8□□□□□ -0.84
HMGA1P4-201ENST00000428643 IGHMBP2P38935 993 aaKnown RBP9.8□□□□□ -0.84
HMGA1P4-201ENST00000428643 RFX5P48382 616 aaPredicted RBP9.8□□□□□ -0.84
HMGA1P4-201ENST00000428643 G3BP1Q13283 466 aaKnown RBP eCLIP9.8□□□□□ -0.84
HMGA1P4-201ENST00000428643 CRY2Q49AN0 593 aa9.8□□□□□ -0.84
HMGA1P4-201ENST00000428643 HSP90AB4PQ58FF6 505 aa9.8□□□□□ -0.84
HMGA1P4-201ENST00000428643 C2CD5Q86YS7 1000 aa9.8□□□□□ -0.84
HMGA1P4-201ENST00000428643 ANKRD18AQ8IVF6 992 aa9.8□□□□□ -0.84
HMGA1P4-201ENST00000428643 GCC1Q96CN9 775 aa9.8□□□□□ -0.84
HMGA1P4-201ENST00000428643 MPHOSPH8Q99549 860 aa9.8□□□□□ -0.84
HMGA1P4-201ENST00000428643 DCTPP1Q9H773 170 aa9.8□□□□□ -0.84
HMGA1P4-201ENST00000428643 COPRSQ9NQ92 184 aa9.8□□□□□ -0.84
HMGA1P4-201ENST00000428643 SEC31BQ9NQW1 1179 aa9.8□□□□□ -0.84
HMGA1P4-201ENST00000428643 LRP5O75197 1615 aa9.8□□□□□ -0.84
HMGA1P4-201ENST00000428643 H0YIN7 160 aa9.79□□□□□ -0.84
HMGA1P4-201ENST00000428643 EYA2O00167 538 aa9.79□□□□□ -0.84
HMGA1P4-201ENST00000428643 CHRNA5P30532 468 aa9.79□□□□□ -0.84
HMGA1P4-201ENST00000428643 PTPN12Q05209 780 aaKnown RBP9.79□□□□□ -0.84
HMGA1P4-201ENST00000428643 GRAPQ13588 217 aa9.79□□□□□ -0.84
HMGA1P4-201ENST00000428643 GRAPLQ8TC17 118 aaPredicted RBP9.79□□□□□ -0.84
HMGA1P4-201ENST00000428643 RBM17Q96I25 401 aaKnown RBP9.79□□□□□ -0.84
HMGA1P4-201ENST00000428643 CNNM1Q9NRU3 951 aa9.79□□□□□ -0.84
HMGA1P4-201ENST00000428643 NOP58Q9Y2X3 529 aaKnown RBP9.79□□□□□ -0.84
HMGA1P4-201ENST00000428643 KLRG2A4D1S0 409 aaPredicted RBP9.78□□□□□ -0.84
HMGA1P4-201ENST00000428643 RAB11FIP3O75154 756 aa9.78□□□□□ -0.84
HMGA1P4-201ENST00000428643 CIAO1O76071 339 aa9.78□□□□□ -0.84
HMGA1P4-201ENST00000428643 SRGNP10124 158 aa9.78□□□□□ -0.84
HMGA1P4-201ENST00000428643 NPR1P16066 1061 aa9.78□□□□□ -0.84
HMGA1P4-201ENST00000428643 PTGER2P43116 358 aa9.78□□□□□ -0.84
HMGA1P4-201ENST00000428643 ANKRD45Q5TZF3 282 aa9.78□□□□□ -0.84
HMGA1P4-201ENST00000428643 LDHAL6AQ6ZMR3 332 aa9.78□□□□□ -0.84
HMGA1P4-201ENST00000428643 ERC1Q8IUD2 1116 aa9.78□□□□□ -0.84
HMGA1P4-201ENST00000428643 SMC5Q8IY18 1101 aa9.78□□□□□ -0.84
HMGA1P4-201ENST00000428643 CELF1Q92879 486 aaKnown RBP9.78□□□□□ -0.84
HMGA1P4-201ENST00000428643 ZNF622Q969S3 477 aaKnown RBP eCLIP9.78□□□□□ -0.84
HMGA1P4-201ENST00000428643 SGIP1Q9BQI5 828 aa9.78□□□□□ -0.84
HMGA1P4-201ENST00000428643 PDZRN3Q9UPQ7 1066 aa9.78□□□□□ -0.84
HMGA1P4-201ENST00000428643 HOXA10P31260 410 aaPredicted RBP9.77□□□□□ -0.85
HMGA1P4-201ENST00000428643 IL15P40933 162 aaPredicted RBP9.77□□□□□ -0.85
HMGA1P4-201ENST00000428643 RPS8P62241 208 aaKnown RBP9.77□□□□□ -0.85
HMGA1P4-201ENST00000428643 LRRC24Q50LG9 513 aa9.77□□□□□ -0.85
HMGA1P4-201ENST00000428643 METTL24Q5JXM2 366 aa9.77□□□□□ -0.85
HMGA1P4-201ENST00000428643 STYK1Q6J9G0 422 aa9.77□□□□□ -0.85
HMGA1P4-201ENST00000428643 KIF1BPQ96EK5 621 aa9.77□□□□□ -0.85
HMGA1P4-201ENST00000428643 MASTLQ96GX5 879 aa9.77□□□□□ -0.85
HMGA1P4-201ENST00000428643 PUS3Q9BZE2 481 aaKnown RBP9.77□□□□□ -0.85
HMGA1P4-201ENST00000428643 LRRCC1Q9C099 1032 aa9.77□□□□□ -0.85
HMGA1P4-201ENST00000428643 IL1RAPL2Q9NP60 686 aa9.77□□□□□ -0.85
HMGA1P4-201ENST00000428643 FBXO3Q9UK99 471 aa9.77□□□□□ -0.85
HMGA1P4-201ENST00000428643 PPEF1O14829 653 aaPredicted RBP9.76□□□□□ -0.85
HMGA1P4-201ENST00000428643 DPEP1P16444 411 aa9.76□□□□□ -0.85
HMGA1P4-201ENST00000428643 NUCB1Q02818 461 aa9.76□□□□□ -0.85
HMGA1P4-201ENST00000428643 TFCP2Q12800 502 aa9.76□□□□□ -0.85
HMGA1P4-201ENST00000428643 ATG9AQ7Z3C6 839 aa9.76□□□□□ -0.85
HMGA1P4-201ENST00000428643 RHPN1Q8TCX5 695 aa9.76□□□□□ -0.85
HMGA1P4-201ENST00000428643 CRAMP1Q96RY5 1269 aa9.76□□□□□ -0.85
HMGA1P4-201ENST00000428643 LNPKQ9C0E8 428 aa9.76□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms