RNA–Protein interactions for RNA: ENST00000427534.6

SPG11-202, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SPG11, Length 6,935 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-202ENST00000427534 TRIM27P14373 513 aa15.17■□□□□ 0.02
SPG11-202ENST00000427534 CCDC148Q8NFR7 591 aa15.16■□□□□ 0.02
SPG11-202ENST00000427534 CRNKL1Q9BZJ0 848 aaKnown RBP15.16■□□□□ 0.02
SPG11-202ENST00000427534 LUZP1Q86V48 1076 aa15.16■□□□□ 0.02
SPG11-202ENST00000427534 DHX29Q7Z478 1369 aaKnown RBP15.16■□□□□ 0.02
SPG11-202ENST00000427534 GINS2Q9Y248 185 aa15.16■□□□□ 0.02
SPG11-202ENST00000427534 PHACTR2O75167 634 aa15.16■□□□□ 0.02
SPG11-202ENST00000427534 SNRPA1P09661 255 aaKnown RBP15.16■□□□□ 0.02
SPG11-202ENST00000427534 BTG4Q9NY30 223 aa15.16■□□□□ 0.02
SPG11-202ENST00000427534 ZNF608Q9ULD9 1512 aaPredicted RBP15.16■□□□□ 0.02
SPG11-202ENST00000427534 FANCAO15360 1455 aa15.16■□□□□ 0.02
SPG11-202ENST00000427534 URI1O94763 535 aaPredicted RBP15.15■□□□□ 0.02
SPG11-202ENST00000427534 IARSP41252 1262 aaKnown RBP15.15■□□□□ 0.02
SPG11-202ENST00000427534 MAP2K1Q02750 393 aaPredicted RBP15.15■□□□□ 0.02
SPG11-202ENST00000427534 TOP1P11387 765 aaKnown RBP15.15■□□□□ 0.02
SPG11-202ENST00000427534 IFFO1Q0D2I5 559 aa15.15■□□□□ 0.02
SPG11-202ENST00000427534 PRDM10Q9NQV6 1147 aa15.15■□□□□ 0.02
SPG11-202ENST00000427534 LMTK3Q96Q04 1460 aa15.15■□□□□ 0.02
SPG11-202ENST00000427534 TCHPQ9BT92 498 aa15.15■□□□□ 0.02
SPG11-202ENST00000427534 MRVI1Q9Y6F6 885 aa15.15■□□□□ 0.02
SPG11-202ENST00000427534 KRT24Q2M2I5 525 aa15.15■□□□□ 0.02
SPG11-202ENST00000427534 MAGEB6Q8N7X4 407 aa15.15■□□□□ 0.02
SPG11-202ENST00000427534 CCDC196A0A1B0GTZ2 297 aa15.15■□□□□ 0.02
SPG11-202ENST00000427534 ATXN8OSP0DMR3 200 aa15.15■□□□□ 0.02
SPG11-202ENST00000427534 GPIHBP1Q8IV16 184 aa15.15■□□□□ 0.02
SPG11-202ENST00000427534 NLRP3Q96P20 1036 aa15.15■□□□□ 0.02
SPG11-202ENST00000427534 MARCKSP29966 332 aaPredicted RBP15.14■□□□□ 0.01
SPG11-202ENST00000427534 TMC6Q7Z403 805 aa15.14■□□□□ 0.01
SPG11-202ENST00000427534 RNF41Q9H4P4 317 aaPredicted RBP15.14■□□□□ 0.01
SPG11-202ENST00000427534 KIF4BQ2VIQ3 1234 aa15.14■□□□□ 0.01
SPG11-202ENST00000427534 DENND4BO75064 1496 aaPredicted RBP15.14■□□□□ 0.01
SPG11-202ENST00000427534 CWF19L2Q2TBE0 894 aaKnown RBP15.14■□□□□ 0.01
SPG11-202ENST00000427534 ORC3Q9UBD5 711 aaPredicted RBP15.14■□□□□ 0.01
SPG11-202ENST00000427534 RTCBQ9Y3I0 505 aaKnown RBP15.14■□□□□ 0.01
SPG11-202ENST00000427534 MYCP01106 439 aaPredicted RBP15.14■□□□□ 0.01
SPG11-202ENST00000427534 FAM98CQ17RN3 349 aaKnown RBP15.14■□□□□ 0.01
SPG11-202ENST00000427534 RAB34Q9BZG1 259 aa15.14■□□□□ 0.01
SPG11-202ENST00000427534 TCP11L1Q9NUJ3 509 aa15.14■□□□□ 0.01
SPG11-202ENST00000427534 KLF18A0A0U1RQI7 1052 aa15.13■□□□□ 0.01
SPG11-202ENST00000427534 NAA16Q6N069 864 aaPredicted RBP15.13■□□□□ 0.01
SPG11-202ENST00000427534 CWC15Q9P013 229 aaKnown RBP15.13■□□□□ 0.01
SPG11-202ENST00000427534 PDIA4P13667 645 aaKnown RBP15.13■□□□□ 0.01
SPG11-202ENST00000427534 LMBR1LQ6UX01 489 aa15.13■□□□□ 0.01
SPG11-202ENST00000427534 JDP2Q8WYK2 163 aa15.13■□□□□ 0.01
SPG11-202ENST00000427534 SMARCC2Q8TAQ2 1214 aa15.13■□□□□ 0.01
SPG11-202ENST00000427534 UTP14AQ9BVJ6 771 aaKnown RBP15.13■□□□□ 0.01
SPG11-202ENST00000427534 CLIP2Q9UDT6 1046 aa15.13■□□□□ 0.01
SPG11-202ENST00000427534 GPATCH8Q9UKJ3 1502 aaKnown RBP15.13■□□□□ 0.01
SPG11-202ENST00000427534 TRERF1Q96PN7 1200 aa15.13■□□□□ 0.01
SPG11-202ENST00000427534 WTAPQ15007 396 aa15.13■□□□□ 0.01
SPG11-202ENST00000427534 MAEAQ7L5Y9 396 aa15.13■□□□□ 0.01
SPG11-202ENST00000427534 TTC21BQ7Z4L5 1316 aa15.13■□□□□ 0.01
SPG11-202ENST00000427534 LMOD1P29536 600 aaPredicted RBP15.13■□□□□ 0.01
SPG11-202ENST00000427534 CETN2P41208 172 aa15.13■□□□□ 0.01
SPG11-202ENST00000427534 HLTFQ14527 1009 aaKnown RBP eCLIP15.13■□□□□ 0.01
SPG11-202ENST00000427534 PTGS1P23219 599 aa15.12■□□□□ 0.01
SPG11-202ENST00000427534 ZMYND15Q9H091 742 aa15.12■□□□□ 0.01
SPG11-202ENST00000427534 PTPRCP08575 1304 aa15.12■□□□□ 0.01
SPG11-202ENST00000427534 DNAI2Q9GZS0 605 aa15.12■□□□□ 0.01
SPG11-202ENST00000427534 CHMP2AO43633 222 aa15.12■□□□□ 0.01
SPG11-202ENST00000427534 TBCAO75347 108 aaKnown RBP15.12■□□□□ 0.01
SPG11-202ENST00000427534 POLR3GO15318 223 aaPredicted RBP15.12■□□□□ 0.01
SPG11-202ENST00000427534 NAPAP54920 295 aa15.12■□□□□ 0.01
SPG11-202ENST00000427534 THOC2Q8NI27 1593 aaKnown RBP15.12■□□□□ 0.01
SPG11-202ENST00000427534 DMRT2Q9Y5R5 561 aa15.12■□□□□ 0.01
SPG11-202ENST00000427534 SLC9C2Q5TAH2 1124 aa15.11■□□□□ 0.01
SPG11-202ENST00000427534 SMC1AQ14683 1233 aaKnown RBP15.11■□□□□ 0.01
SPG11-202ENST00000427534 EVI5LQ96CN4 794 aa15.11■□□□□ 0.01
SPG11-202ENST00000427534 NEK1Q96PY6 1258 aa15.11■□□□□ 0.01
SPG11-202ENST00000427534 MEIS3Q99687 375 aa15.11■□□□□ 0.01
SPG11-202ENST00000427534 MCM9Q9NXL9 1143 aa15.11■□□□□ 0.01
SPG11-202ENST00000427534 UBA7P41226 1012 aa15.11■□□□□ 0.01
SPG11-202ENST00000427534 CCDC174Q6PII3 467 aa15.11■□□□□ 0.01
SPG11-202ENST00000427534 ZC3H12CQ9C0D7 883 aaKnown RBP15.11■□□□□ 0.01
SPG11-202ENST00000427534 MAGEB6P1A0A0J9YX57 407 aa15.11■□□□□ 0.01
SPG11-202ENST00000427534 DDX39AO00148 427 aaKnown RBP15.11■□□□□ 0.01
SPG11-202ENST00000427534 LDHCP07864 332 aa15.11■□□□□ 0.01
SPG11-202ENST00000427534 KIF5BP33176 963 aa15.11■□□□□ 0.01
SPG11-202ENST00000427534 PPARDQ03181 441 aa15.11■□□□□ 0.01
SPG11-202ENST00000427534 CADPS2Q86UW7 1296 aa15.11■□□□□ 0.01
SPG11-202ENST00000427534 HOOK3Q86VS8 718 aa15.11■□□□□ 0.01
SPG11-202ENST00000427534 TXLNBQ8N3L3 684 aa15.11■□□□□ 0.01
SPG11-202ENST00000427534 USP25Q9UHP3 1055 aa15.11■□□□□ 0.01
SPG11-202ENST00000427534 RBM25P49756 843 aaKnown RBP15.11■□□□□ 0.01
SPG11-202ENST00000427534 TTF1Q15361 905 aaPredicted RBP15.11■□□□□ 0.01
SPG11-202ENST00000427534 MTERF4Q7Z6M4 381 aaKnown RBP15.11■□□□□ 0.01
SPG11-202ENST00000427534 PAIP2Q9BPZ3 127 aaKnown RBP15.11■□□□□ 0.01
SPG11-202ENST00000427534 TCP10Q12799 353 aa15.1■□□□□ 0.01
SPG11-202ENST00000427534 NCOA7Q8NI08 942 aa15.1■□□□□ 0.01
SPG11-202ENST00000427534 NBPF14Q5TI25 921 aa15.1■□□□□ 0.01
SPG11-202ENST00000427534 ZNF804AQ7Z570 1209 aa15.1■□□□□ 0.01
SPG11-202ENST00000427534 ANKRD36BQ8N2N9 1353 aa15.1■□□□□ 0.01
SPG11-202ENST00000427534 TAF12Q16514 161 aa15.1■□□□□ 0.01
SPG11-202ENST00000427534 GPCPD1Q9NPB8 672 aa15.1■□□□□ 0.01
SPG11-202ENST00000427534 NF2P35240 595 aa15.1■□□□□ 0.01
SPG11-202ENST00000427534 BRF1Q92994 677 aa15.1■□□□□ 0.01
SPG11-202ENST00000427534 HOMER2Q9NSB8 354 aa15.1■□□□□ 0.01
SPG11-202ENST00000427534 EXOC1Q9NV70 894 aa15.1■□□□□ 0.01
SPG11-202ENST00000427534 BIVM-ERCC5R4GMW8 1640 aa15.1■□□□□ 0.01
SPG11-202ENST00000427534 PEG3Q9GZU2 1588 aa15.1■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms