RNA–Protein interactions for RNA: ENST00000424478.5

PRPF39-202, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 2

Gene PRPF39, Length 3,174 nt, Biotype nonsense mediated decay.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-202ENST00000424478 PPP1R1BQ9UD71 204 aaPredicted RBP16.75■□□□□ 0.27
PRPF39-202ENST00000424478 SURF6O75683 361 aaKnown RBP16.75■□□□□ 0.27
PRPF39-202ENST00000424478 ERICH6BQ5W0A0 696 aa16.75■□□□□ 0.27
PRPF39-202ENST00000424478 RPAP2Q8IXW5 612 aaPredicted RBP16.75■□□□□ 0.27
PRPF39-202ENST00000424478 RWDD1Q9H446 243 aaPredicted RBP16.74■□□□□ 0.27
PRPF39-202ENST00000424478 MYH3P11055 1940 aa16.74■□□□□ 0.27
PRPF39-202ENST00000424478 KDM2BQ8NHM5 1336 aa16.74■□□□□ 0.27
PRPF39-202ENST00000424478 CDHR2Q9BYE9 1310 aa16.74■□□□□ 0.27
PRPF39-202ENST00000424478 ITGA6P23229 1130 aa16.74■□□□□ 0.27
PRPF39-202ENST00000424478 RABL6Q3YEC7 729 aaPredicted RBP16.74■□□□□ 0.27
PRPF39-202ENST00000424478 NYXQ9GZU5 481 aa16.74■□□□□ 0.27
PRPF39-202ENST00000424478 QSER1Q2KHR3 1735 aa16.74■□□□□ 0.27
PRPF39-202ENST00000424478 LAMB2P55268 1798 aa16.73■□□□□ 0.27
PRPF39-202ENST00000424478 LRRC24Q50LG9 513 aa16.73■□□□□ 0.27
PRPF39-202ENST00000424478 SSH3Q8TE77 659 aa16.73■□□□□ 0.27
PRPF39-202ENST00000424478 HMGB2P26583 209 aaKnown RBP16.73■□□□□ 0.27
PRPF39-202ENST00000424478 RFX5P48382 616 aaPredicted RBP16.73■□□□□ 0.27
PRPF39-202ENST00000424478 IL1RAPL2Q9NP60 686 aa16.73■□□□□ 0.27
PRPF39-202ENST00000424478 PTPN12Q05209 780 aaKnown RBP16.72■□□□□ 0.27
PRPF39-202ENST00000424478 HDAC1Q13547 482 aaPredicted RBP16.72■□□□□ 0.27
PRPF39-202ENST00000424478 POLA2Q14181 598 aa16.72■□□□□ 0.27
PRPF39-202ENST00000424478 SPEF2Q9C093 1822 aa16.72■□□□□ 0.27
PRPF39-202ENST00000424478 CSF1RP07333 972 aa16.71■□□□□ 0.27
PRPF39-202ENST00000424478 CHRNA5P30532 468 aa16.71■□□□□ 0.27
PRPF39-202ENST00000424478 CCDC57Q2TAC2 916 aa16.71■□□□□ 0.27
PRPF39-202ENST00000424478 ANKRD45Q5TZF3 282 aa16.71■□□□□ 0.27
PRPF39-202ENST00000424478 NLRP3Q96P20 1036 aa16.71■□□□□ 0.27
PRPF39-202ENST00000424478 LNPKQ9C0E8 428 aa16.71■□□□□ 0.27
PRPF39-202ENST00000424478 ST5P78524 1137 aa16.71■□□□□ 0.27
PRPF39-202ENST00000424478 OS9Q13438 667 aaPredicted RBP16.71■□□□□ 0.27
PRPF39-202ENST00000424478 C16orf71Q8IYS4 520 aaPredicted RBP16.71■□□□□ 0.27
PRPF39-202ENST00000424478 CELF1Q92879 486 aaKnown RBP16.71■□□□□ 0.27
PRPF39-202ENST00000424478 ANKRD31Q8N7Z5 1873 aa16.71■□□□□ 0.27
PRPF39-202ENST00000424478 SNAP23O00161 211 aa16.71■□□□□ 0.26
PRPF39-202ENST00000424478 MTX1Q13505 466 aa16.71■□□□□ 0.26
PRPF39-202ENST00000424478 WTIPA6NIX2 430 aaPredicted RBP16.7■□□□□ 0.26
PRPF39-202ENST00000424478 IFIT5Q13325 482 aaKnown RBP16.7■□□□□ 0.26
PRPF39-202ENST00000424478 TAF7LQ5H9L4 462 aa16.7■□□□□ 0.26
PRPF39-202ENST00000424478 HELBQ8NG08 1087 aaPredicted RBP16.7■□□□□ 0.26
PRPF39-202ENST00000424478 PLA2G12BQ9BX93 195 aa16.7■□□□□ 0.26
PRPF39-202ENST00000424478 HMMRO75330 724 aa16.7■□□□□ 0.26
PRPF39-202ENST00000424478 OTUD7AQ8TE49 926 aaPredicted RBP16.69■□□□□ 0.26
PRPF39-202ENST00000424478 PDZRN3Q9UPQ7 1066 aa16.69■□□□□ 0.26
PRPF39-202ENST00000424478 RGS3P49796 1198 aa16.69■□□□□ 0.26
PRPF39-202ENST00000424478 AAMPQ13685 434 aa16.69■□□□□ 0.26
PRPF39-202ENST00000424478 OLFM4Q6UX06 510 aa16.69■□□□□ 0.26
PRPF39-202ENST00000424478 DCTPP1Q9H773 170 aa16.69■□□□□ 0.26
PRPF39-202ENST00000424478 RGL2O15211 777 aa16.69■□□□□ 0.26
PRPF39-202ENST00000424478 SLC10A5Q5PT55 438 aa16.69■□□□□ 0.26
PRPF39-202ENST00000424478 MTFR1LQ9H019 292 aa16.69■□□□□ 0.26
PRPF39-202ENST00000424478 ZNF219Q9P2Y4 722 aaPredicted RBP16.69■□□□□ 0.26
PRPF39-202ENST00000424478 CCDC152Q4G0S7 254 aa16.68■□□□□ 0.26
PRPF39-202ENST00000424478 TSHZ3Q63HK5 1081 aa16.68■□□□□ 0.26
PRPF39-202ENST00000424478 CENPQQ7L2Z9 268 aaPredicted RBP16.68■□□□□ 0.26
PRPF39-202ENST00000424478 ANKRD18BA2A2Z9 1011 aa16.67■□□□□ 0.26
PRPF39-202ENST00000424478 SASH1O94885 1247 aa16.67■□□□□ 0.26
PRPF39-202ENST00000424478 SMC5Q8IY18 1101 aa16.67■□□□□ 0.26
PRPF39-202ENST00000424478 HDAC5Q9UQL6 1122 aa16.67■□□□□ 0.26
PRPF39-202ENST00000424478 LDHAL6AQ6ZMR3 332 aa16.67■□□□□ 0.26
PRPF39-202ENST00000424478 TAF5LO75529 589 aa16.66■□□□□ 0.26
PRPF39-202ENST00000424478 SLC16A10Q8TF71 515 aa16.66■□□□□ 0.26
PRPF39-202ENST00000424478 IBTKQ9P2D0 1353 aaPredicted RBP16.66■□□□□ 0.26
PRPF39-202ENST00000424478 A0A0G2JLW4 131 aa16.66■□□□□ 0.26
PRPF39-202ENST00000424478 PTGER2P43116 358 aa16.66■□□□□ 0.26
PRPF39-202ENST00000424478 TFCP2Q12800 502 aa16.66■□□□□ 0.26
PRPF39-202ENST00000424478 CACNA1SQ13698 1873 aa16.66■□□□□ 0.26
PRPF39-202ENST00000424478 ATG9AQ7Z3C6 839 aa16.66■□□□□ 0.26
PRPF39-202ENST00000424478 RPGRQ92834 1020 aaKnown RBP16.66■□□□□ 0.26
PRPF39-202ENST00000424478 ZNF622Q969S3 477 aaKnown RBP eCLIP16.66■□□□□ 0.261e-6■□□□□ 11.2
PRPF39-202ENST00000424478 CNNM1Q9NRU3 951 aa16.66■□□□□ 0.26
PRPF39-202ENST00000424478 COL11A2P13942 1736 aaPredicted RBP16.65■□□□□ 0.26
PRPF39-202ENST00000424478 NRXN2Q9P2S2 1712 aa16.65■□□□□ 0.26
PRPF39-202ENST00000424478 SF3B3Q15393 1217 aaKnown RBP16.65■□□□□ 0.26
PRPF39-202ENST00000424478 PDE4AP27815 886 aa16.65■□□□□ 0.26
PRPF39-202ENST00000424478 G3BP1Q13283 466 aaKnown RBP eCLIP16.65■□□□□ 0.26
PRPF39-202ENST00000424478 BRIP1Q9BX63 1249 aa16.65■□□□□ 0.26
PRPF39-202ENST00000424478 COPRSQ9NQ92 184 aa16.65■□□□□ 0.26
PRPF39-202ENST00000424478 DDX46Q7L014 1031 aaKnown RBP16.64■□□□□ 0.25
PRPF39-202ENST00000424478 C2CD5Q86YS7 1000 aa16.64■□□□□ 0.25
PRPF39-202ENST00000424478 RHPN1Q8TCX5 695 aa16.64■□□□□ 0.25
PRPF39-202ENST00000424478 POLD1P28340 1107 aa16.64■□□□□ 0.25
PRPF39-202ENST00000424478 TLR7Q9NYK1 1049 aaKnown RBP16.64■□□□□ 0.25
PRPF39-202ENST00000424478 MPHOSPH8Q99549 860 aa16.63■□□□□ 0.25
PRPF39-202ENST00000424478 SGIP1Q9BQI5 828 aa16.63■□□□□ 0.25
PRPF39-202ENST00000424478 EYA2O00167 538 aa16.63■□□□□ 0.25
PRPF39-202ENST00000424478 CHD1LQ86WJ1 897 aa16.63■□□□□ 0.25
PRPF39-202ENST00000424478 CCDC8Q9H0W5 538 aaPredicted RBP16.63■□□□□ 0.25
PRPF39-202ENST00000424478 SOCS7O14512 581 aa16.63■□□□□ 0.25
PRPF39-202ENST00000424478 SRGNP10124 158 aa16.63■□□□□ 0.25
PRPF39-202ENST00000424478 GCC1Q96CN9 775 aa16.63■□□□□ 0.25
PRPF39-202ENST00000424478 LRRCC1Q9C099 1032 aa16.63■□□□□ 0.25
PRPF39-202ENST00000424478 NUCB1Q02818 461 aa16.62■□□□□ 0.25
PRPF39-202ENST00000424478 CRY2Q49AN0 593 aa16.62■□□□□ 0.25
PRPF39-202ENST00000424478 ANKRD18AQ8IVF6 992 aa16.62■□□□□ 0.25
PRPF39-202ENST00000424478 GPR101Q96P66 508 aaPredicted RBP16.62■□□□□ 0.25
PRPF39-202ENST00000424478 TIMM10P62072 90 aa16.62■□□□□ 0.25
PRPF39-202ENST00000424478 NOP58Q9Y2X3 529 aaKnown RBP16.62■□□□□ 0.25
PRPF39-202ENST00000424478 RPS8P62241 208 aaKnown RBP16.61■□□□□ 0.25
PRPF39-202ENST00000424478 DPEP1P16444 411 aa16.61■□□□□ 0.25
PRPF39-202ENST00000424478 IGHMBP2P38935 993 aaKnown RBP16.61■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 51.6 ms