RNA–Protein interactions for RNA: ENST00000423575.5

LINC00539-202, long intergenic non-protein coding RNA 539, humanhuman

TSL 3 BASIC

Gene LINC00539, Length 699 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00539-202ENST00000423575 LRRFIP2Q9Y608 721 aaKnown RBP15.21■□□□□ 0.03
LINC00539-202ENST00000423575 H0YIN7 160 aa15.2■□□□□ 0.02
LINC00539-202ENST00000423575 KCNA3P22001 575 aa15.2■□□□□ 0.02
LINC00539-202ENST00000423575 TTLL11Q8NHH1 800 aa15.2■□□□□ 0.02
LINC00539-202ENST00000423575 CCDC85AQ96PX6 553 aaPredicted RBP15.2■□□□□ 0.02
LINC00539-202ENST00000423575 PDZRN3Q9UPQ7 1066 aa15.2■□□□□ 0.02
LINC00539-202ENST00000423575 CSF1RP07333 972 aa15.19■□□□□ 0.02
LINC00539-202ENST00000423575 NPR1P16066 1061 aa15.19■□□□□ 0.02
LINC00539-202ENST00000423575 FAM161AQ3B820 660 aa15.19■□□□□ 0.02
LINC00539-202ENST00000423575 RABL6Q3YEC7 729 aaPredicted RBP15.19■□□□□ 0.02
LINC00539-202ENST00000423575 LMBR1LQ6UX01 489 aa15.19■□□□□ 0.02
LINC00539-202ENST00000423575 RPGRQ92834 1020 aaKnown RBP15.19■□□□□ 0.02
LINC00539-202ENST00000423575 MASTLQ96GX5 879 aa15.19■□□□□ 0.02
LINC00539-202ENST00000423575 GREM2Q9H772 168 aa15.19■□□□□ 0.02
LINC00539-202ENST00000423575 C1orf115Q9H7X2 142 aa15.19■□□□□ 0.02
LINC00539-202ENST00000423575 GNAI2P04899 355 aa15.18■□□□□ 0.02
LINC00539-202ENST00000423575 HOXA10P31260 410 aaPredicted RBP15.18■□□□□ 0.02
LINC00539-202ENST00000423575 IRX6P78412 446 aaPredicted RBP15.18■□□□□ 0.02
LINC00539-202ENST00000423575 CCDC152Q4G0S7 254 aa15.18■□□□□ 0.02
LINC00539-202ENST00000423575 STYK1Q6J9G0 422 aa15.18■□□□□ 0.02
LINC00539-202ENST00000423575 ZBTB40Q9NUA8 1239 aa15.18■□□□□ 0.02
LINC00539-202ENST00000423575 RTL9Q8NET4 1388 aa15.18■□□□□ 0.02
LINC00539-202ENST00000423575 COL4A1P02462 1669 aa15.18■□□□□ 0.02
LINC00539-202ENST00000423575 ZNF622Q969S3 477 aaKnown RBP eCLIP15.17■□□□□ 0.02
LINC00539-202ENST00000423575 RBM17Q96I25 401 aaKnown RBP15.17■□□□□ 0.02
LINC00539-202ENST00000423575 SEC31BQ9NQW1 1179 aa15.17■□□□□ 0.02
LINC00539-202ENST00000423575 WWC3Q9ULE0 1092 aa15.17■□□□□ 0.02
LINC00539-202ENST00000423575 DDX46Q7L014 1031 aaKnown RBP15.16■□□□□ 0.02
LINC00539-202ENST00000423575 CRAMP1Q96RY5 1269 aa15.16■□□□□ 0.02
LINC00539-202ENST00000423575 HDAC5Q9UQL6 1122 aa15.16■□□□□ 0.02
LINC00539-202ENST00000423575 CHMP3Q9Y3E7 222 aa15.16■□□□□ 0.02
LINC00539-202ENST00000423575 DLEC1Q9Y238 1755 aa15.16■□□□□ 0.02
LINC00539-202ENST00000423575 ITGA6P23229 1130 aa15.15■□□□□ 0.02
LINC00539-202ENST00000423575 GRAPQ13588 217 aa15.15■□□□□ 0.02
LINC00539-202ENST00000423575 SLC51AQ86UW1 340 aa15.15■□□□□ 0.02
LINC00539-202ENST00000423575 EXOC6Q8TAG9 804 aa15.15■□□□□ 0.02
LINC00539-202ENST00000423575 GRAPLQ8TC17 118 aaPredicted RBP15.15■□□□□ 0.02
LINC00539-202ENST00000423575 CELF1Q92879 486 aaKnown RBP15.15■□□□□ 0.02
LINC00539-202ENST00000423575 PIM2Q9P1W9 311 aa15.15■□□□□ 0.02
LINC00539-202ENST00000423575 MTX1Q13505 466 aa15.14■□□□□ 0.01
LINC00539-202ENST00000423575 PRPF40BQ6NWY9 871 aaKnown RBP15.14■□□□□ 0.01
LINC00539-202ENST00000423575 TTLL6Q8N841 843 aa15.14■□□□□ 0.01
LINC00539-202ENST00000423575 CNKSR1Q969H4 720 aa15.14■□□□□ 0.01
LINC00539-202ENST00000423575 CHMP4BQ9H444 224 aaKnown RBP15.14■□□□□ 0.01
LINC00539-202ENST00000423575 MYH3P11055 1940 aa15.13■□□□□ 0.01
LINC00539-202ENST00000423575 IFIT5Q13325 482 aaKnown RBP15.13■□□□□ 0.01
LINC00539-202ENST00000423575 CEP85Q6P2H3 762 aa15.13■□□□□ 0.01
LINC00539-202ENST00000423575 CDC5LQ99459 802 aaKnown RBP15.13■□□□□ 0.01
LINC00539-202ENST00000423575 GOLGB1Q14789 3259 aaKnown RBP15.12■□□□□ 0.01
LINC00539-202ENST00000423575 PNMA6EA0A0J9YXQ4 647 aa15.12■□□□□ 0.01
LINC00539-202ENST00000423575 ANKRD18BA2A2Z9 1011 aa15.12■□□□□ 0.01
LINC00539-202ENST00000423575 PPEF1O14829 653 aaPredicted RBP15.12■□□□□ 0.01
LINC00539-202ENST00000423575 ALDH1B1P30837 517 aa15.12■□□□□ 0.01
LINC00539-202ENST00000423575 RFX5P48382 616 aaPredicted RBP15.12■□□□□ 0.01
LINC00539-202ENST00000423575 CCDC57Q2TAC2 916 aa15.12■□□□□ 0.01
LINC00539-202ENST00000423575 DALRD3Q5D0E6 543 aaKnown RBP15.12■□□□□ 0.01
LINC00539-202ENST00000423575 ZNF594Q96JF6 807 aaPredicted RBP15.12■□□□□ 0.01
LINC00539-202ENST00000423575 BRCA1P38398 1863 aaKnown RBP15.12■□□□□ 0.01
LINC00539-202ENST00000423575 SRGAP3O43295 1099 aa15.11■□□□□ 0.01
LINC00539-202ENST00000423575 RPS8P62241 208 aaKnown RBP15.11■□□□□ 0.01
LINC00539-202ENST00000423575 OLFM4Q6UX06 510 aa15.11■□□□□ 0.01
LINC00539-202ENST00000423575 ANKRD18AQ8IVF6 992 aa15.11■□□□□ 0.01
LINC00539-202ENST00000423575 KLHDC4Q8TBB5 520 aa15.11■□□□□ 0.01
LINC00539-202ENST00000423575 C7orf43Q8WVR3 580 aa15.11■□□□□ 0.01
LINC00539-202ENST00000423575 BCS1LQ9Y276 419 aa15.11■□□□□ 0.01
LINC00539-202ENST00000423575 BBOX1O75936 387 aa15.1■□□□□ 0.01
LINC00539-202ENST00000423575 ATP8B2P98198 1209 aa15.1■□□□□ 0.01
LINC00539-202ENST00000423575 POLA2Q14181 598 aa15.1■□□□□ 0.01
LINC00539-202ENST00000423575 SIRT2Q8IXJ6 389 aa15.1■□□□□ 0.01
LINC00539-202ENST00000423575 ZNF219Q9P2Y4 722 aaPredicted RBP15.1■□□□□ 0.01
LINC00539-202ENST00000423575 SLX4Q8IY92 1834 aa15.1■□□□□ 0.01
LINC00539-202ENST00000423575 TAF1P21675 1872 aa15.1■□□□□ 0.01
LINC00539-202ENST00000423575 C21orf2O43822 256 aa15.09■□□□□ 0.01
LINC00539-202ENST00000423575 YBX3P16989 372 aaKnown RBP eCLIP15.09■□□□□ 0.01
LINC00539-202ENST00000423575 IGHMBP2P38935 993 aaKnown RBP15.09■□□□□ 0.01
LINC00539-202ENST00000423575 PTPN12Q05209 780 aaKnown RBP15.09■□□□□ 0.01
LINC00539-202ENST00000423575 TAF7LQ5H9L4 462 aa15.09■□□□□ 0.01
LINC00539-202ENST00000423575 SSH3Q8TE77 659 aa15.09■□□□□ 0.01
LINC00539-202ENST00000423575 PA2G4Q9UQ80 394 aaKnown RBP15.09■□□□□ 0.01
LINC00539-202ENST00000423575 ATP6V0A2Q9Y487 856 aa15.09■□□□□ 0.01
LINC00539-202ENST00000423575 PCDHB15Q9Y5E8 787 aa15.09■□□□□ 0.01
LINC00539-202ENST00000423575 TMC4Q7Z404 712 aa15.08■□□□□ 0
LINC00539-202ENST00000423575 RPAP2Q8IXW5 612 aaPredicted RBP15.08■□□□□ 0
LINC00539-202ENST00000423575 PELP1Q8IZL8 1130 aaKnown RBP15.08■□□□□ 0
LINC00539-202ENST00000423575 MPHOSPH8Q99549 860 aa15.08■□□□□ 0
LINC00539-202ENST00000423575 PUS3Q9BZE2 481 aaKnown RBP15.08■□□□□ 0
LINC00539-202ENST00000423575 BSDC1Q9NW68 430 aaPredicted RBP15.08■□□□□ 0
LINC00539-202ENST00000423575 SNED1Q8TER0 1413 aa15.08■□□□□ 0
LINC00539-202ENST00000423575 COPRSQ9NQ92 184 aa15.07■□□□□ 0
LINC00539-202ENST00000423575 LRRC37AA6NMS7 1700 aa15.06■□□□□ 0
LINC00539-202ENST00000423575 AAMPQ13685 434 aa15.06■□□□□ 0
LINC00539-202ENST00000423575 LRRC24Q50LG9 513 aa15.06■□□□□ 0
LINC00539-202ENST00000423575 CCDC93Q567U6 631 aa15.06■□□□□ 0
LINC00539-202ENST00000423575 LDHAL6AQ6ZMR3 332 aa15.06■□□□□ 0
LINC00539-202ENST00000423575 SP8Q8IXZ3 490 aa15.06■□□□□ 0
LINC00539-202ENST00000423575 SIL1Q9H173 461 aa15.06■□□□□ 0
LINC00539-202ENST00000423575 CACNA1SQ13698 1873 aa15.06■□□□□ 0
LINC00539-202ENST00000423575 EYA2O00167 538 aa15.05■□□□□ -0
LINC00539-202ENST00000423575 NEFLP07196 543 aa15.05■□□□□ -0
LINC00539-202ENST00000423575 GPR162Q16538 588 aa15.05■□□□□ -0
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms