RNA–Protein interactions for RNA: ENST00000423058.6

SCN1A-204, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SCN1A, Length 8,191 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-204ENST00000423058 UQCRHP07919 91 aa7.82□□□□□ -1.16
SCN1A-204ENST00000423058 CCDC144CPQ8IYA2 1237 aa7.82□□□□□ -1.16
SCN1A-204ENST00000423058 ANKS4BQ8N8V4 417 aa7.82□□□□□ -1.16
SCN1A-204ENST00000423058 HAUS7Q99871 368 aa7.82□□□□□ -1.16
SCN1A-204ENST00000423058 ITSN2Q9NZM3 1697 aa7.81□□□□□ -1.16
SCN1A-204ENST00000423058 PPP1R9BQ96SB3 815 aa7.81□□□□□ -1.16
SCN1A-204ENST00000423058 TMOD4Q9NZQ9 345 aa7.81□□□□□ -1.16
SCN1A-204ENST00000423058 IDEP14735 1019 aa7.81□□□□□ -1.16
SCN1A-204ENST00000423058 STX1AQ16623 288 aa7.81□□□□□ -1.16
SCN1A-204ENST00000423058 RNF187Q5TA31 235 aaPredicted RBP7.81□□□□□ -1.16
SCN1A-204ENST00000423058 TCHPQ9BT92 498 aa7.81□□□□□ -1.16
SCN1A-204ENST00000423058 KIAA1107Q9UPP5 1409 aa7.81□□□□□ -1.16
SCN1A-204ENST00000423058 CAVIN2O95810 425 aa7.81□□□□□ -1.16
SCN1A-204ENST00000423058 IARSP41252 1262 aaKnown RBP7.81□□□□□ -1.16
SCN1A-204ENST00000423058 STAT6P42226 847 aa7.81□□□□□ -1.16
SCN1A-204ENST00000423058 CADPS2Q86UW7 1296 aa7.81□□□□□ -1.16
SCN1A-204ENST00000423058 GPHNQ9NQX3 736 aaPredicted RBP7.81□□□□□ -1.16
SCN1A-204ENST00000423058 NOD1Q9Y239 953 aa7.81□□□□□ -1.16
SCN1A-204ENST00000423058 PARP3Q9Y6F1 533 aa7.81□□□□□ -1.16
SCN1A-204ENST00000423058 TTC21BQ7Z4L5 1316 aa7.81□□□□□ -1.16
SCN1A-204ENST00000423058 ALDH3A1P30838 453 aa7.81□□□□□ -1.16
SCN1A-204ENST00000423058 METAP2P50579 478 aaKnown RBP eCLIP7.81□□□□□ -1.16
SCN1A-204ENST00000423058 CCDC63Q8NA47 563 aa7.81□□□□□ -1.16
SCN1A-204ENST00000423058 TTC14Q96N46 770 aa7.81□□□□□ -1.16
SCN1A-204ENST00000423058 JADE2Q9NQC1 790 aa7.81□□□□□ -1.16
SCN1A-204ENST00000423058 HMG20BQ9P0W2 317 aa7.81□□□□□ -1.16
SCN1A-204ENST00000423058 ZBTB16Q05516 673 aa7.81□□□□□ -1.16
SCN1A-204ENST00000423058 NCOA7Q8NI08 942 aa7.81□□□□□ -1.16
SCN1A-204ENST00000423058 FBF1Q8TES7 1133 aa7.81□□□□□ -1.16
SCN1A-204ENST00000423058 SMC6Q96SB8 1091 aa7.81□□□□□ -1.16
SCN1A-204ENST00000423058 IL1RAPL2Q9NP60 686 aa7.81□□□□□ -1.16
SCN1A-204ENST00000423058 DNA2P51530 1060 aa7.81□□□□□ -1.16
SCN1A-204ENST00000423058 CDAN1Q8IWY9 1227 aa7.81□□□□□ -1.16
SCN1A-204ENST00000423058 SMARCC2Q8TAQ2 1214 aa7.81□□□□□ -1.16
SCN1A-204ENST00000423058 SH2D4AQ9H788 454 aa7.81□□□□□ -1.16
SCN1A-204ENST00000423058 ABCC11Q96J66 1382 aa7.81□□□□□ -1.16
SCN1A-204ENST00000423058 FAM13AO94988 1023 aa7.8□□□□□ -1.16
SCN1A-204ENST00000423058 TPD52P55327 224 aaPredicted RBP7.8□□□□□ -1.16
SCN1A-204ENST00000423058 LDHAL6AQ6ZMR3 332 aa7.8□□□□□ -1.16
SCN1A-204ENST00000423058 DNAAF4Q8WXU2 420 aa7.8□□□□□ -1.16
SCN1A-204ENST00000423058 TBC1D31Q96DN5 1066 aa7.8□□□□□ -1.16
SCN1A-204ENST00000423058 SLC12A5Q9H2X9 1139 aa7.8□□□□□ -1.16
SCN1A-204ENST00000423058 RIOK3O14730 519 aaKnown RBP7.8□□□□□ -1.16
SCN1A-204ENST00000423058 CRCPO75575 148 aa7.8□□□□□ -1.16
SCN1A-204ENST00000423058 ALDH1L2Q3SY69 923 aa7.8□□□□□ -1.16
SCN1A-204ENST00000423058 MAATS1Q7Z4T9 603 aa7.8□□□□□ -1.16
SCN1A-204ENST00000423058 TRAF3IP1Q8TDR0 691 aaPredicted RBP7.8□□□□□ -1.16
SCN1A-204ENST00000423058 RBM27Q9P2N5 1060 aaKnown RBP7.8□□□□□ -1.16
SCN1A-204ENST00000423058 CAMK4Q16566 473 aa7.8□□□□□ -1.16
SCN1A-204ENST00000423058 ERCC6LQ2NKX8 1250 aa7.8□□□□□ -1.16
SCN1A-204ENST00000423058 TRMT1LQ7Z2T5 733 aaKnown RBP7.8□□□□□ -1.16
SCN1A-204ENST00000423058 PICK1Q9NRD5 415 aa7.8□□□□□ -1.16
SCN1A-204ENST00000423058 USP25Q9UHP3 1055 aa7.8□□□□□ -1.16
SCN1A-204ENST00000423058 STX8Q9UNK0 236 aa7.8□□□□□ -1.16
SCN1A-204ENST00000423058 NAIPQ13075 1403 aa7.8□□□□□ -1.16
SCN1A-204ENST00000423058 NSD3Q9BZ95 1437 aa7.8□□□□□ -1.16
SCN1A-204ENST00000423058 AQRO60306 1485 aaKnown RBP eCLIP7.8□□□□□ -1.16
SCN1A-204ENST00000423058 ARID4AP29374 1257 aaPredicted RBP7.8□□□□□ -1.16
SCN1A-204ENST00000423058 NUTM1Q86Y26 1132 aa7.8□□□□□ -1.16
SCN1A-204ENST00000423058 GSDMBQ8TAX9 411 aa7.8□□□□□ -1.16
SCN1A-204ENST00000423058 GRPEL1Q9HAV7 217 aa7.8□□□□□ -1.16
SCN1A-204ENST00000423058 MCM5P33992 734 aa7.8□□□□□ -1.16
SCN1A-204ENST00000423058 NLRP3Q96P20 1036 aa7.8□□□□□ -1.16
SCN1A-204ENST00000423058 NAP1L3Q99457 506 aaPredicted RBP7.8□□□□□ -1.16
SCN1A-204ENST00000423058 EYA3Q99504 573 aa7.8□□□□□ -1.16
SCN1A-204ENST00000423058 MMRN2Q9H8L6 949 aa7.8□□□□□ -1.16
SCN1A-204ENST00000423058 FAM114A2Q9NRY5 505 aa7.8□□□□□ -1.16
SCN1A-204ENST00000423058 FAM169AQ9Y6X4 670 aa7.8□□□□□ -1.16
SCN1A-204ENST00000423058 CCDC110Q8TBZ0 833 aa7.79□□□□□ -1.16
SCN1A-204ENST00000423058 ESR2Q92731 530 aa7.79□□□□□ -1.16
SCN1A-204ENST00000423058 ZFYP08048 801 aaPredicted RBP7.79□□□□□ -1.16
SCN1A-204ENST00000423058 CUL4BQ13620 913 aa7.79□□□□□ -1.16
SCN1A-204ENST00000423058 WTAPQ15007 396 aa7.79□□□□□ -1.16
SCN1A-204ENST00000423058 IFNL2Q8IZJ0 200 aa7.79□□□□□ -1.16
SCN1A-204ENST00000423058 TRIM47Q96LD4 638 aa7.79□□□□□ -1.16
SCN1A-204ENST00000423058 CGNQ9P2M7 1197 aaKnown RBP7.79□□□□□ -1.16
SCN1A-204ENST00000423058 MRVI1Q9Y6F6 885 aa7.79□□□□□ -1.16
SCN1A-204ENST00000423058 URI1O94763 535 aaPredicted RBP7.79□□□□□ -1.16
SCN1A-204ENST00000423058 CYLC1P35663 651 aaPredicted RBP7.79□□□□□ -1.16
SCN1A-204ENST00000423058 TICAM2Q86XR7 235 aa7.79□□□□□ -1.16
SCN1A-204ENST00000423058 AFAP1L2Q8N4X5 818 aa7.79□□□□□ -1.16
SCN1A-204ENST00000423058 PRPF40BQ6NWY9 871 aaKnown RBP7.79□□□□□ -1.16
SCN1A-204ENST00000423058 CCDC6Q16204 474 aa7.79□□□□□ -1.16
SCN1A-204ENST00000423058 CFAP157Q5JU67 520 aa7.79□□□□□ -1.16
SCN1A-204ENST00000423058 ZSCAN16Q9H4T2 348 aaPredicted RBP7.79□□□□□ -1.16
SCN1A-204ENST00000423058 GIPC1O14908 333 aa7.79□□□□□ -1.16
SCN1A-204ENST00000423058 STK10O94804 968 aaKnown RBP7.79□□□□□ -1.16
SCN1A-204ENST00000423058 FAM212AQ96EL1 285 aa7.79□□□□□ -1.16
SCN1A-204ENST00000423058 SPAG5Q96R06 1193 aa7.79□□□□□ -1.16
SCN1A-204ENST00000423058 NCAPGQ9BPX3 1015 aa7.79□□□□□ -1.16
SCN1A-204ENST00000423058 DDX19AQ9NUU7 478 aaKnown RBP7.79□□□□□ -1.16
SCN1A-204ENST00000423058 RRP9O43818 475 aaKnown RBP7.78□□□□□ -1.16
SCN1A-204ENST00000423058 CALML3P27482 149 aa7.78□□□□□ -1.16
SCN1A-204ENST00000423058 SATB1Q01826 763 aa7.78□□□□□ -1.16
SCN1A-204ENST00000423058 PAIP2Q9BPZ3 127 aaKnown RBP7.78□□□□□ -1.16
SCN1A-204ENST00000423058 AK9Q5TCS8 1911 aa7.78□□□□□ -1.16
SCN1A-204ENST00000423058 CALM1P0DP23 149 aa7.78□□□□□ -1.16
SCN1A-204ENST00000423058 CALM2P0DP24 149 aa7.78□□□□□ -1.16
SCN1A-204ENST00000423058 CALM3P0DP25 149 aa7.78□□□□□ -1.16
SCN1A-204ENST00000423058 GNAT2P19087 354 aa7.78□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 98.3 ms