RNA–Protein interactions for RNA: ENST00000422991.1

COL7A1-202, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 597 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-202ENST00000422991 SRGNP10124 158 aa21.35■■□□□ 1.01
COL7A1-202ENST00000422991 CHRNA5P30532 468 aa21.35■■□□□ 1.01
COL7A1-202ENST00000422991 FOXO4P98177 505 aa21.35■■□□□ 1.01
COL7A1-202ENST00000422991 SF3B3Q15393 1217 aaKnown RBP21.35■■□□□ 1.01
COL7A1-202ENST00000422991 EPHA10Q5JZY3 1008 aa21.35■■□□□ 1.01
COL7A1-202ENST00000422991 PELP1Q8IZL8 1130 aaKnown RBP21.35■■□□□ 1.01
COL7A1-202ENST00000422991 H0YIN7 160 aa21.34■■□□□ 1.01
COL7A1-202ENST00000422991 DPEP1P16444 411 aa21.34■■□□□ 1.01
COL7A1-202ENST00000422991 LRRFIP2Q9Y608 721 aaKnown RBP21.34■■□□□ 1.01
COL7A1-202ENST00000422991 TAF1P21675 1872 aa21.34■■□□□ 1.01
COL7A1-202ENST00000422991 RTL9Q8NET4 1388 aa21.34■■□□□ 1.01
COL7A1-202ENST00000422991 COL4A1P02462 1669 aa21.34■■□□□ 1.01
COL7A1-202ENST00000422991 A0A0G2JLW4 131 aa21.33■■□□□ 1.01
COL7A1-202ENST00000422991 ANKRD44Q8N8A2 993 aa21.33■■□□□ 1.01
COL7A1-202ENST00000422991 TTLL11Q8NHH1 800 aa21.33■■□□□ 1.01
COL7A1-202ENST00000422991 BICC1Q9H694 974 aaKnown RBP21.33■■□□□ 1.01
COL7A1-202ENST00000422991 HDAC5Q9UQL6 1122 aa21.33■■□□□ 1.01
COL7A1-202ENST00000422991 SPEF2Q9C093 1822 aa21.32■■□□□ 1
COL7A1-202ENST00000422991 CHD4Q14839 1912 aa21.32■■□□□ 1
COL7A1-202ENST00000422991 CSF1RP07333 972 aa21.32■■□□□ 1
COL7A1-202ENST00000422991 NPR1P16066 1061 aa21.32■■□□□ 1
COL7A1-202ENST00000422991 KCNA3P22001 575 aa21.32■■□□□ 1
COL7A1-202ENST00000422991 HOXA10P31260 410 aaPredicted RBP21.32■■□□□ 1
COL7A1-202ENST00000422991 RABL6Q3YEC7 729 aaPredicted RBP21.32■■□□□ 1
COL7A1-202ENST00000422991 CCDC152Q4G0S7 254 aa21.32■■□□□ 1
COL7A1-202ENST00000422991 STYK1Q6J9G0 422 aa21.32■■□□□ 1
COL7A1-202ENST00000422991 RPGRQ92834 1020 aaKnown RBP21.32■■□□□ 1
COL7A1-202ENST00000422991 MASTLQ96GX5 879 aa21.32■■□□□ 1
COL7A1-202ENST00000422991 GNAI2P04899 355 aa21.31■■□□□ 1
COL7A1-202ENST00000422991 CRBNQ96SW2 442 aa21.31■■□□□ 1
COL7A1-202ENST00000422991 CHMP4BQ9H444 224 aaKnown RBP21.31■■□□□ 1
COL7A1-202ENST00000422991 SLX4Q8IY92 1834 aa21.3■■□□□ 1
COL7A1-202ENST00000422991 GRIN3BO60391 1043 aa21.3■■□□□ 1
COL7A1-202ENST00000422991 YBX3P16989 372 aaKnown RBP eCLIP21.3■■□□□ 1
COL7A1-202ENST00000422991 FAM161AQ3B820 660 aa21.3■■□□□ 1
COL7A1-202ENST00000422991 LMBR1LQ6UX01 489 aa21.3■■□□□ 1
COL7A1-202ENST00000422991 CCDC85AQ96PX6 553 aaPredicted RBP21.3■■□□□ 1
COL7A1-202ENST00000422991 GREM2Q9H772 168 aa21.3■■□□□ 1
COL7A1-202ENST00000422991 ZBTB40Q9NUA8 1239 aa21.3■■□□□ 1
COL7A1-202ENST00000422991 ARFGEF1Q9Y6D6 1849 aa21.29■■□□□ 1
COL7A1-202ENST00000422991 ZNF622Q969S3 477 aaKnown RBP eCLIP21.29■■□□□ 1
COL7A1-202ENST00000422991 RBM17Q96I25 401 aaKnown RBP21.29■■□□□ 1
COL7A1-202ENST00000422991 CRAMP1Q96RY5 1269 aa21.29■■□□□ 1
COL7A1-202ENST00000422991 LRRC37AA6NMS7 1700 aa21.29■■□□□ 1
COL7A1-202ENST00000422991 DDX46Q7L014 1031 aaKnown RBP21.28■■□□□ 1
COL7A1-202ENST00000422991 C1orf115Q9H7X2 142 aa21.28■■□□□ 1
COL7A1-202ENST00000422991 SEC31BQ9NQW1 1179 aa21.27■■□□□ 1
COL7A1-202ENST00000422991 PIM2Q9P1W9 311 aa21.27■■□□□ 1
COL7A1-202ENST00000422991 CHMP3Q9Y3E7 222 aa21.27■■□□□ 1
COL7A1-202ENST00000422991 ITGA6P23229 1130 aa21.26■□□□□ 0.99
COL7A1-202ENST00000422991 ALDH1B1P30837 517 aa21.26■□□□□ 0.99
COL7A1-202ENST00000422991 MTX1Q13505 466 aa21.26■□□□□ 0.99
COL7A1-202ENST00000422991 CNKSR1Q969H4 720 aa21.26■□□□□ 0.99
COL7A1-202ENST00000422991 IRX6P78412 446 aaPredicted RBP21.25■□□□□ 0.99
COL7A1-202ENST00000422991 GRAPQ13588 217 aa21.25■□□□□ 0.99
COL7A1-202ENST00000422991 PRPF40BQ6NWY9 871 aaKnown RBP21.25■□□□□ 0.99
COL7A1-202ENST00000422991 TTLL6Q8N841 843 aa21.25■□□□□ 0.99
COL7A1-202ENST00000422991 GRAPLQ8TC17 118 aaPredicted RBP21.25■□□□□ 0.99
COL7A1-202ENST00000422991 A0A1B0GUL6 1792 aa21.24■□□□□ 0.99
COL7A1-202ENST00000422991 IFIT5Q13325 482 aaKnown RBP21.24■□□□□ 0.99
COL7A1-202ENST00000422991 CELF1Q92879 486 aaKnown RBP21.24■□□□□ 0.99
COL7A1-202ENST00000422991 CDC5LQ99459 802 aaKnown RBP21.24■□□□□ 0.99
COL7A1-202ENST00000422991 ANKRD18BA2A2Z9 1011 aa21.23■□□□□ 0.99
COL7A1-202ENST00000422991 DALRD3Q5D0E6 543 aaKnown RBP21.23■□□□□ 0.99
COL7A1-202ENST00000422991 EXOC6Q8TAG9 804 aa21.23■□□□□ 0.99
COL7A1-202ENST00000422991 CCDC57Q2TAC2 916 aa21.22■□□□□ 0.99
COL7A1-202ENST00000422991 CEP85Q6P2H3 762 aa21.22■□□□□ 0.99
COL7A1-202ENST00000422991 WWC3Q9ULE0 1092 aa21.22■□□□□ 0.99
COL7A1-202ENST00000422991 PPEF1O14829 653 aaPredicted RBP21.21■□□□□ 0.99
COL7A1-202ENST00000422991 RFX5P48382 616 aaPredicted RBP21.21■□□□□ 0.99
COL7A1-202ENST00000422991 RPS8P62241 208 aaKnown RBP21.21■□□□□ 0.99
COL7A1-202ENST00000422991 ANKRD18AQ8IVF6 992 aa21.21■□□□□ 0.99
COL7A1-202ENST00000422991 PNMA6EA0A0J9YXQ4 647 aa21.2■□□□□ 0.98
COL7A1-202ENST00000422991 SRGAP3O43295 1099 aa21.2■□□□□ 0.98
COL7A1-202ENST00000422991 BBOX1O75936 387 aa21.2■□□□□ 0.98
COL7A1-202ENST00000422991 AAMPQ13685 434 aa21.2■□□□□ 0.98
COL7A1-202ENST00000422991 TMC4Q7Z404 712 aa21.2■□□□□ 0.98
COL7A1-202ENST00000422991 LTBP1Q14766 1721 aa21.2■□□□□ 0.98
COL7A1-202ENST00000422991 IGHMBP2P38935 993 aaKnown RBP21.19■□□□□ 0.98
COL7A1-202ENST00000422991 ATP8B2P98198 1209 aa21.19■□□□□ 0.98
COL7A1-202ENST00000422991 SLC51AQ86UW1 340 aa21.19■□□□□ 0.98
COL7A1-202ENST00000422991 C7orf43Q8WVR3 580 aa21.19■□□□□ 0.98
COL7A1-202ENST00000422991 ZNF594Q96JF6 807 aaPredicted RBP21.19■□□□□ 0.98
COL7A1-202ENST00000422991 BCS1LQ9Y276 419 aa21.19■□□□□ 0.98
COL7A1-202ENST00000422991 SNED1Q8TER0 1413 aa21.19■□□□□ 0.98
COL7A1-202ENST00000422991 FER1L6Q2WGJ9 1857 aa21.18■□□□□ 0.98
COL7A1-202ENST00000422991 POLA2Q14181 598 aa21.18■□□□□ 0.98
COL7A1-202ENST00000422991 TAF7LQ5H9L4 462 aa21.18■□□□□ 0.98
COL7A1-202ENST00000422991 RPAP2Q8IXW5 612 aaPredicted RBP21.18■□□□□ 0.98
COL7A1-202ENST00000422991 SSH3Q8TE77 659 aa21.18■□□□□ 0.98
COL7A1-202ENST00000422991 BSDC1Q9NW68 430 aaPredicted RBP21.18■□□□□ 0.98
COL7A1-202ENST00000422991 ATP6V0A2Q9Y487 856 aa21.18■□□□□ 0.98
COL7A1-202ENST00000422991 PTPN12Q05209 780 aaKnown RBP21.17■□□□□ 0.98
COL7A1-202ENST00000422991 SIRT2Q8IXJ6 389 aa21.17■□□□□ 0.98
COL7A1-202ENST00000422991 KLHDC4Q8TBB5 520 aa21.17■□□□□ 0.98
COL7A1-202ENST00000422991 C21orf2O43822 256 aa21.16■□□□□ 0.98
COL7A1-202ENST00000422991 SP8Q8IXZ3 490 aa21.16■□□□□ 0.98
COL7A1-202ENST00000422991 ZNF784Q8NCA9 323 aaPredicted RBP21.16■□□□□ 0.98
COL7A1-202ENST00000422991 MPHOSPH8Q99549 860 aa21.16■□□□□ 0.98
COL7A1-202ENST00000422991 COPRSQ9NQ92 184 aa21.16■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 79.6 ms