RNA–Protein interactions for RNA: ENST00000418501.5

USP54-203, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,370 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-203ENST00000418501 HMG20BQ9P0W2 317 aa10.1□□□□□ -0.79
USP54-203ENST00000418501 CTNNA3Q9UI47 895 aa10.1□□□□□ -0.79
USP54-203ENST00000418501 CTSWP56202 376 aa10.09□□□□□ -0.79
USP54-203ENST00000418501 EIF5P55010 431 aaKnown RBP10.09□□□□□ -0.79
USP54-203ENST00000418501 KIF3AQ9Y496 699 aa10.09□□□□□ -0.79
USP54-203ENST00000418501 KCPQ6ZWJ8 1503 aa10.09□□□□□ -0.79
USP54-203ENST00000418501 HSPA1LP34931 641 aa10.09□□□□□ -0.79
USP54-203ENST00000418501 FGD1P98174 961 aa10.09□□□□□ -0.79
USP54-203ENST00000418501 RPS6KA4O75676 772 aa10.08□□□□□ -0.8
USP54-203ENST00000418501 TFCP2Q12800 502 aa10.08□□□□□ -0.8
USP54-203ENST00000418501 SLC27A3Q5K4L6 730 aa10.08□□□□□ -0.8
USP54-203ENST00000418501 TRAPPC3LQ5T215 181 aa10.08□□□□□ -0.8
USP54-203ENST00000418501 FLAD1Q8NFF5 587 aa10.08□□□□□ -0.8
USP54-203ENST00000418501 DNAJC2Q99543 621 aaKnown RBP10.08□□□□□ -0.8
USP54-203ENST00000418501 USP26Q9BXU7 913 aa10.08□□□□□ -0.8
USP54-203ENST00000418501 U3KPZ7 1027 aaPredicted RBP10.08□□□□□ -0.8
USP54-203ENST00000418501 ABCC12Q96J65 1359 aa10.08□□□□□ -0.8
USP54-203ENST00000418501 ATP2B3Q16720 1220 aa10.08□□□□□ -0.8
USP54-203ENST00000418501 SEPT12Q8IYM1 358 aa10.08□□□□□ -0.8
USP54-203ENST00000418501 ZSCAN31Q96LW9 406 aaPredicted RBP10.08□□□□□ -0.8
USP54-203ENST00000418501 PTPN12Q05209 780 aaKnown RBP10.07□□□□□ -0.8
USP54-203ENST00000418501 NLRP3Q96P20 1036 aa10.07□□□□□ -0.8
USP54-203ENST00000418501 BCL11BQ9C0K0 894 aaPredicted RBP10.07□□□□□ -0.8
USP54-203ENST00000418501 BOLA2Q9H3K6 86 aa10.07□□□□□ -0.8
USP54-203ENST00000418501 LRP10Q7Z4F1 713 aa10.07□□□□□ -0.8
USP54-203ENST00000418501 VPS37DQ86XT2 251 aa10.07□□□□□ -0.8
USP54-203ENST00000418501 OTUD7AQ8TE49 926 aaPredicted RBP10.07□□□□□ -0.8
USP54-203ENST00000418501 N4BP2Q86UW6 1770 aaPredicted RBP10.07□□□□□ -0.8
USP54-203ENST00000418501 DDX11L8A8MPP1 907 aa10.07□□□□□ -0.8
USP54-203ENST00000418501 NCLP19338 710 aaKnown RBP10.07□□□□□ -0.8
USP54-203ENST00000418501 NBPF5PQ86XG9 351 aaPredicted RBP10.07□□□□□ -0.8
USP54-203ENST00000418501 FAM89AQ96GI7 184 aa10.07□□□□□ -0.8
USP54-203ENST00000418501 ITGA6P23229 1130 aa10.07□□□□□ -0.8
USP54-203ENST00000418501 CWC27Q6UX04 472 aaKnown RBP10.07□□□□□ -0.8
USP54-203ENST00000418501 ANKRD18AQ8IVF6 992 aa10.07□□□□□ -0.8
USP54-203ENST00000418501 ANKRD2Q9GZV1 360 aa10.07□□□□□ -0.8
USP54-203ENST00000418501 HMGB1P09429 215 aaKnown RBP10.06□□□□□ -0.8
USP54-203ENST00000418501 DEKP35659 375 aaKnown RBP10.06□□□□□ -0.8
USP54-203ENST00000418501 KRT27Q7Z3Y8 459 aa10.06□□□□□ -0.8
USP54-203ENST00000418501 ZNF34Q8IZ26 560 aa10.06□□□□□ -0.8
USP54-203ENST00000418501 HELLSQ9NRZ9 838 aa10.06□□□□□ -0.8
USP54-203ENST00000418501 GNPATO15228 680 aa10.06□□□□□ -0.8
USP54-203ENST00000418501 RBM6P78332 1123 aaKnown RBP10.06□□□□□ -0.8
USP54-203ENST00000418501 FOXO4P98177 505 aa10.06□□□□□ -0.8
USP54-203ENST00000418501 CYP46A1Q9Y6A2 500 aa10.06□□□□□ -0.8
USP54-203ENST00000418501 ST5P78524 1137 aa10.06□□□□□ -0.8
USP54-203ENST00000418501 CAVIN4Q5BKX8 364 aa10.06□□□□□ -0.8
USP54-203ENST00000418501 ZSCAN21Q9Y5A6 473 aaPredicted RBP10.06□□□□□ -0.8
USP54-203ENST00000418501 SGSM2O43147 1006 aa10.05□□□□□ -0.8
USP54-203ENST00000418501 IGSF3O75054 1194 aa10.05□□□□□ -0.8
USP54-203ENST00000418501 PUM3Q15397 648 aaKnown RBP10.05□□□□□ -0.8
USP54-203ENST00000418501 SEC24BO95487 1268 aa10.05□□□□□ -0.8
USP54-203ENST00000418501 CSF1RP07333 972 aa10.05□□□□□ -0.8
USP54-203ENST00000418501 NEK4P51957 841 aa10.05□□□□□ -0.8
USP54-203ENST00000418501 TMED8Q6PL24 325 aaPredicted RBP10.05□□□□□ -0.8
USP54-203ENST00000418501 DDX46Q7L014 1031 aaKnown RBP10.05□□□□□ -0.8
USP54-203ENST00000418501 EAF2Q96CJ1 260 aaPredicted RBP10.05□□□□□ -0.8
USP54-203ENST00000418501 TBC1D2Q9BYX2 928 aa10.05□□□□□ -0.8
USP54-203ENST00000418501 NARFQ9UHQ1 456 aa10.05□□□□□ -0.8
USP54-203ENST00000418501 ATP6V1DQ9Y5K8 247 aa10.05□□□□□ -0.8
USP54-203ENST00000418501 LPIN2Q92539 896 aa10.05□□□□□ -0.8
USP54-203ENST00000418501 HAUS7Q99871 368 aa10.05□□□□□ -0.8
USP54-203ENST00000418501 FRAT2O75474 233 aaPredicted RBP10.05□□□□□ -0.8
USP54-203ENST00000418501 SF3B2Q13435 895 aaKnown RBP10.05□□□□□ -0.8
USP54-203ENST00000418501 CSPP1Q1MSJ5 1256 aa10.05□□□□□ -0.8
USP54-203ENST00000418501 PI4K2BQ8TCG2 481 aa10.05□□□□□ -0.8
USP54-203ENST00000418501 SLKQ9H2G2 1235 aaPredicted RBP10.05□□□□□ -0.8
USP54-203ENST00000418501 PAG1Q9NWQ8 432 aa10.05□□□□□ -0.8
USP54-203ENST00000418501 A0A1B0GUL7 405 aa10.04□□□□□ -0.8
USP54-203ENST00000418501 SASH1O94885 1247 aa10.04□□□□□ -0.8
USP54-203ENST00000418501 SKOR2Q2VWA4 1001 aaPredicted RBP10.04□□□□□ -0.8
USP54-203ENST00000418501 MCMDC2Q4G0Z9 681 aa10.04□□□□□ -0.8
USP54-203ENST00000418501 JARID2Q92833 1246 aaPredicted RBP10.04□□□□□ -0.8
USP54-203ENST00000418501 SALL3Q9BXA9 1300 aa10.04□□□□□ -0.8
USP54-203ENST00000418501 FAM177BA6PVY3 158 aa10.04□□□□□ -0.8
USP54-203ENST00000418501 CASP7P55210 303 aa10.04□□□□□ -0.8
USP54-203ENST00000418501 MAP3K12Q12852 859 aa10.04□□□□□ -0.8
USP54-203ENST00000418501 WASHC4Q2M389 1173 aa10.04□□□□□ -0.8
USP54-203ENST00000418501 MAP4K4O95819 1239 aaPredicted RBP10.04□□□□□ -0.8
USP54-203ENST00000418501 TRDNQ13061 729 aa10.04□□□□□ -0.8
USP54-203ENST00000418501 KBTBD3Q8NAB2 608 aa10.04□□□□□ -0.8
USP54-203ENST00000418501 SH2B1Q9NRF2 756 aaPredicted RBP10.04□□□□□ -0.8
USP54-203ENST00000418501 SSFA2P28290 1259 aa10.03□□□□□ -0.8
USP54-203ENST00000418501 RFX5P48382 616 aaPredicted RBP10.03□□□□□ -0.8
USP54-203ENST00000418501 NBR1Q14596 966 aa10.03□□□□□ -0.8
USP54-203ENST00000418501 TTLL11Q8NHH1 800 aa10.03□□□□□ -0.8
USP54-203ENST00000418501 NOL10Q9BSC4 688 aaKnown RBP10.03□□□□□ -0.8
USP54-203ENST00000418501 NACAP1Q9BZK3 213 aa10.03□□□□□ -0.8
USP54-203ENST00000418501 KAT6BQ8WYB5 2073 aa10.03□□□□□ -0.8
USP54-203ENST00000418501 BCL9LQ86UU0 1499 aa10.03□□□□□ -0.8
USP54-203ENST00000418501 FKBP4Q02790 459 aaKnown RBP eCLIP10.03□□□□□ -0.8
USP54-203ENST00000418501 EPHA10Q5JZY3 1008 aa10.03□□□□□ -0.8
USP54-203ENST00000418501 INTS5Q6P9B9 1019 aaKnown RBP10.03□□□□□ -0.8
USP54-203ENST00000418501 PAPPAQ13219 1627 aa10.03□□□□□ -0.8
USP54-203ENST00000418501 RNF113AO15541 343 aaKnown RBP10.03□□□□□ -0.8
USP54-203ENST00000418501 CAMTA2O94983 1202 aa10.03□□□□□ -0.8
USP54-203ENST00000418501 TM6SF1Q9BZW5 370 aa10.02□□□□□ -0.81
USP54-203ENST00000418501 HLFQ16534 295 aa10.02□□□□□ -0.81
USP54-203ENST00000418501 TSHZ3Q63HK5 1081 aa10.02□□□□□ -0.81
USP54-203ENST00000418501 BLOC1S2Q6QNY1 142 aa10.02□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms