RNA–Protein interactions for RNA: ENST00000417656.6

SKA1-203, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 2 BASIC

Gene SKA1, Length 1,095 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-203ENST00000417656 C21orf2O43822 256 aa15.81■□□□□ 0.12
SKA1-203ENST00000417656 ALDH1L1O75891 902 aa15.81■□□□□ 0.12
SKA1-203ENST00000417656 HOXA10P31260 410 aaPredicted RBP15.81■□□□□ 0.12
SKA1-203ENST00000417656 CASP7P55210 303 aa15.81■□□□□ 0.12
SKA1-203ENST00000417656 FRAT1Q92837 279 aaPredicted RBP15.81■□□□□ 0.12
SKA1-203ENST00000417656 RBM17Q96I25 401 aaKnown RBP15.81■□□□□ 0.12
SKA1-203ENST00000417656 API5Q9BZZ5 524 aaKnown RBP15.81■□□□□ 0.12
SKA1-203ENST00000417656 PDE8AO60658 829 aa15.8■□□□□ 0.12
SKA1-203ENST00000417656 SF3B3Q15393 1217 aaKnown RBP15.8■□□□□ 0.12
SKA1-203ENST00000417656 ARHGAP27Q6ZUM4 889 aa15.8■□□□□ 0.12
SKA1-203ENST00000417656 SLC51AQ86UW1 340 aa15.8■□□□□ 0.12
SKA1-203ENST00000417656 CRAMP1Q96RY5 1269 aa15.8■□□□□ 0.12
SKA1-203ENST00000417656 TNNQ9UQP3 1299 aa15.8■□□□□ 0.12
SKA1-203ENST00000417656 GRM8O00222 908 aa15.79■□□□□ 0.12
SKA1-203ENST00000417656 PPEF1O14829 653 aaPredicted RBP15.79■□□□□ 0.12
SKA1-203ENST00000417656 HSP90B1P14625 803 aaKnown RBP15.79■□□□□ 0.12
SKA1-203ENST00000417656 ALDH1B1P30837 517 aa15.79■□□□□ 0.12
SKA1-203ENST00000417656 CTSWP56202 376 aa15.79■□□□□ 0.12
SKA1-203ENST00000417656 RASSF7Q02833 373 aa15.79■□□□□ 0.12
SKA1-203ENST00000417656 OLFM4Q6UX06 510 aa15.79■□□□□ 0.12
SKA1-203ENST00000417656 CCDC85AQ96PX6 553 aaPredicted RBP15.79■□□□□ 0.12
SKA1-203ENST00000417656 TIAM2Q8IVF5 1701 aa15.78■□□□□ 0.12
SKA1-203ENST00000417656 TRIM27P14373 513 aa15.78■□□□□ 0.12
SKA1-203ENST00000417656 DDX46Q7L014 1031 aaKnown RBP15.78■□□□□ 0.12
SKA1-203ENST00000417656 ARHGAP45Q92619 1136 aa15.78■□□□□ 0.12
SKA1-203ENST00000417656 C9orf78Q9NZ63 289 aaPredicted RBP15.78■□□□□ 0.12
SKA1-203ENST00000417656 SBF1O95248 1867 aa15.78■□□□□ 0.12
SKA1-203ENST00000417656 SNED1Q8TER0 1413 aa15.77■□□□□ 0.12
SKA1-203ENST00000417656 GRAPQ13588 217 aa15.77■□□□□ 0.12
SKA1-203ENST00000417656 CCDC152Q4G0S7 254 aa15.77■□□□□ 0.12
SKA1-203ENST00000417656 ATF7IPQ6VMQ6 1270 aa15.77■□□□□ 0.12
SKA1-203ENST00000417656 GRAPLQ8TC17 118 aaPredicted RBP15.77■□□□□ 0.12
SKA1-203ENST00000417656 C7orf43Q8WVR3 580 aa15.77■□□□□ 0.12
SKA1-203ENST00000417656 PLA2G12BQ9BX93 195 aa15.77■□□□□ 0.12
SKA1-203ENST00000417656 UTRNP46939 3433 aa15.77■□□□□ 0.11
SKA1-203ENST00000417656 CCDC88AQ3V6T2 1871 aa15.76■□□□□ 0.11
SKA1-203ENST00000417656 NFKBIEO00221 500 aa15.76■□□□□ 0.11
SKA1-203ENST00000417656 IPO8O15397 1037 aaKnown RBP15.76■□□□□ 0.11
SKA1-203ENST00000417656 NBPF7P0C2Y1 421 aaPredicted RBP15.76■□□□□ 0.11
SKA1-203ENST00000417656 CCT4P50991 539 aaKnown RBP15.76■□□□□ 0.11
SKA1-203ENST00000417656 CCDC93Q567U6 631 aa15.76■□□□□ 0.11
SKA1-203ENST00000417656 ZKSCAN2Q63HK3 967 aa15.76■□□□□ 0.11
SKA1-203ENST00000417656 CELF1Q92879 486 aaKnown RBP15.76■□□□□ 0.11
SKA1-203ENST00000417656 CLUAP1Q96AJ1 413 aa15.76■□□□□ 0.11
SKA1-203ENST00000417656 SEC31BQ9NQW1 1179 aa15.76■□□□□ 0.11
SKA1-203ENST00000417656 RCAN3Q9UKA8 241 aa15.76■□□□□ 0.11
SKA1-203ENST00000417656 UTYO14607 1347 aa15.75■□□□□ 0.11
SKA1-203ENST00000417656 FAM161AQ3B820 660 aa15.75■□□□□ 0.11
SKA1-203ENST00000417656 SOGA3Q5TF21 947 aa15.75■□□□□ 0.11
SKA1-203ENST00000417656 TTLL11Q8NHH1 800 aa15.75■□□□□ 0.11
SKA1-203ENST00000417656 SUCLG2Q96I99 432 aa15.75■□□□□ 0.11
SKA1-203ENST00000417656 GREM2Q9H772 168 aa15.75■□□□□ 0.11
SKA1-203ENST00000417656 RTL9Q8NET4 1388 aa15.75■□□□□ 0.11
SKA1-203ENST00000417656 LTBP1Q14766 1721 aa15.74■□□□□ 0.11
SKA1-203ENST00000417656 EPHA10Q5JZY3 1008 aa15.74■□□□□ 0.11
SKA1-203ENST00000417656 TAOK3Q9H2K8 898 aa15.74■□□□□ 0.11
SKA1-203ENST00000417656 DUOX1Q9NRD9 1551 aa15.74■□□□□ 0.11
SKA1-203ENST00000417656 A0A1B0GUL6 1792 aa15.73■□□□□ 0.11
SKA1-203ENST00000417656 PRELPP51888 382 aa15.73■□□□□ 0.11
SKA1-203ENST00000417656 FOXO4P98177 505 aa15.73■□□□□ 0.11
SKA1-203ENST00000417656 INTS3Q68E01 1043 aaKnown RBP15.73■□□□□ 0.11
SKA1-203ENST00000417656 USP44Q9H0E7 712 aa15.73■□□□□ 0.11
SKA1-203ENST00000417656 ATP6V0A2Q9Y487 856 aa15.73■□□□□ 0.11
SKA1-203ENST00000417656 DICER1Q9UPY3 1922 aaKnown RBP15.72■□□□□ 0.11
SKA1-203ENST00000417656 BBOX1O75936 387 aa15.72■□□□□ 0.11
SKA1-203ENST00000417656 KAZALD1Q96I82 304 aa15.72■□□□□ 0.11
SKA1-203ENST00000417656 CHMP3Q9Y3E7 222 aa15.72■□□□□ 0.11
SKA1-203ENST00000417656 LTBP3Q9NS15 1303 aa15.71■□□□□ 0.11
SKA1-203ENST00000417656 MYCNP04198 464 aaPredicted RBP15.71■□□□□ 0.11
SKA1-203ENST00000417656 CSF1RP07333 972 aa15.71■□□□□ 0.11
SKA1-203ENST00000417656 YY1P25490 414 aa15.71■□□□□ 0.11
SKA1-203ENST00000417656 FKBP4Q02790 459 aaKnown RBP eCLIP15.71■□□□□ 0.11
SKA1-203ENST00000417656 C9orf131Q5VYM1 1079 aa15.71■□□□□ 0.11
SKA1-203ENST00000417656 CC2D2BQ6DHV5 1058 aa15.71■□□□□ 0.11
SKA1-203ENST00000417656 LMBR1LQ6UX01 489 aa15.71■□□□□ 0.11
SKA1-203ENST00000417656 FTSJ3Q8IY81 847 aaKnown RBP15.71■□□□□ 0.11
SKA1-203ENST00000417656 RTKN2Q8IZC4 609 aa15.71■□□□□ 0.11
SKA1-203ENST00000417656 TMEM57Q8N5G2 664 aa15.71■□□□□ 0.11
SKA1-203ENST00000417656 CDC5LQ99459 802 aaKnown RBP15.71■□□□□ 0.11
SKA1-203ENST00000417656 MEIS3Q99687 375 aa15.71■□□□□ 0.11
SKA1-203ENST00000417656 RNF181Q9P0P0 153 aa15.71■□□□□ 0.11
SKA1-203ENST00000417656 RLBP1P12271 317 aa15.7■□□□□ 0.1
SKA1-203ENST00000417656 ITGA6P23229 1130 aa15.7■□□□□ 0.1
SKA1-203ENST00000417656 RPS8P62241 208 aaKnown RBP15.7■□□□□ 0.1
SKA1-203ENST00000417656 TMC4Q7Z404 712 aa15.7■□□□□ 0.1
SKA1-203ENST00000417656 ANKRD18AQ8IVF6 992 aa15.7■□□□□ 0.1
SKA1-203ENST00000417656 SP8Q8IXZ3 490 aa15.7■□□□□ 0.1
SKA1-203ENST00000417656 DZIP1LQ8IYY4 767 aaKnown RBP15.7■□□□□ 0.1
SKA1-203ENST00000417656 BICC1Q9H694 974 aaKnown RBP15.7■□□□□ 0.1
SKA1-203ENST00000417656 UBTFL1P0CB47 393 aaPredicted RBP15.69■□□□□ 0.1
SKA1-203ENST00000417656 LMNB1P20700 586 aa15.69■□□□□ 0.1
SKA1-203ENST00000417656 ANKRD44Q8N8A2 993 aa15.69■□□□□ 0.1
SKA1-203ENST00000417656 TMX4Q9H1E5 349 aaPredicted RBP15.69■□□□□ 0.1
SKA1-203ENST00000417656 ZNF277Q9NRM2 450 aaPredicted RBP15.69■□□□□ 0.1
SKA1-203ENST00000417656 COL4A5P29400 1685 aa15.69■□□□□ 0.1
SKA1-203ENST00000417656 ANKRD18BA2A2Z9 1011 aa15.68■□□□□ 0.1
SKA1-203ENST00000417656 PLIN1O60240 522 aa15.68■□□□□ 0.1
SKA1-203ENST00000417656 RABL6Q3YEC7 729 aaPredicted RBP15.68■□□□□ 0.1
SKA1-203ENST00000417656 PANK1Q8TE04 598 aa15.68■□□□□ 0.1
SKA1-203ENST00000417656 PSMD1Q99460 953 aa15.68■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms