RNA–Protein interactions for RNA: ENST00000414978.5

MCF2-204, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene MCF2, Length 3,813 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-204ENST00000414978 ZNF516Q92618 1163 aa3.58□□□□□ -1.84
MCF2-204ENST00000414978 FCF1Q9Y324 198 aaKnown RBP3.58□□□□□ -1.84
MCF2-204ENST00000414978 EMILIN1Q9Y6C2 1016 aa3.58□□□□□ -1.84
MCF2-204ENST00000414978 MRPL42Q9Y6G3 142 aaKnown RBP3.58□□□□□ -1.84
MCF2-204ENST00000414978 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP3.58□□□□□ -1.84
MCF2-204ENST00000414978 SETBP1Q9Y6X0 1596 aa3.58□□□□□ -1.84
MCF2-204ENST00000414978 ARHGAP33O14559 1287 aa3.57□□□□□ -1.84
MCF2-204ENST00000414978 MAP4K4O95819 1239 aaPredicted RBP3.57□□□□□ -1.84
MCF2-204ENST00000414978 PDXDC2PQ6P474 469 aa3.57□□□□□ -1.84
MCF2-204ENST00000414978 POTEAQ6S8J7 498 aa3.57□□□□□ -1.84
MCF2-204ENST00000414978 GPR152Q8TDT2 470 aa3.57□□□□□ -1.84
MCF2-204ENST00000414978 RNF34Q969K3 372 aa3.57□□□□□ -1.84
MCF2-204ENST00000414978 MAF1Q9H063 256 aa3.57□□□□□ -1.84
MCF2-204ENST00000414978 GGT7Q9UJ14 662 aa3.57□□□□□ -1.84
MCF2-204ENST00000414978 SPATA31A6Q5VVP1 1343 aa3.57□□□□□ -1.84
MCF2-204ENST00000414978 JCADQ9P266 1359 aa3.57□□□□□ -1.84
MCF2-204ENST00000414978 CCDC194A0A1B0GVG4 234 aa3.57□□□□□ -1.84
MCF2-204ENST00000414978 PSDA5PKW4 1024 aaPredicted RBP3.57□□□□□ -1.84
MCF2-204ENST00000414978 ENPP3O14638 875 aa3.57□□□□□ -1.84
MCF2-204ENST00000414978 MYCP01106 439 aaPredicted RBP3.57□□□□□ -1.84
MCF2-204ENST00000414978 IRS1P35568 1242 aa3.57□□□□□ -1.84
MCF2-204ENST00000414978 ATP2B2Q01814 1243 aa3.57□□□□□ -1.84
MCF2-204ENST00000414978 MAP7D1Q3KQU3 841 aa3.57□□□□□ -1.84
MCF2-204ENST00000414978 DESI1Q6ICB0 168 aa3.57□□□□□ -1.84
MCF2-204ENST00000414978 ARHGEF10LQ9HCE6 1279 aa3.57□□□□□ -1.84
MCF2-204ENST00000414978 ZNF358Q9NW07 568 aa3.57□□□□□ -1.84
MCF2-204ENST00000414978 EGFL7Q9UHF1 273 aa3.57□□□□□ -1.84
MCF2-204ENST00000414978 THRAP3Q9Y2W1 955 aaKnown RBP3.57□□□□□ -1.84
MCF2-204ENST00000414978 CLIP1P30622 1438 aa3.57□□□□□ -1.84
MCF2-204ENST00000414978 CTSHP09668 335 aa3.57□□□□□ -1.84
MCF2-204ENST00000414978 SIX5Q8N196 739 aa3.57□□□□□ -1.84
MCF2-204ENST00000414978 HELQQ8TDG4 1101 aa3.57□□□□□ -1.84
MCF2-204ENST00000414978 SCUBE2Q9NQ36 999 aa3.57□□□□□ -1.84
MCF2-204ENST00000414978 POLIQ9UNA4 740 aa3.57□□□□□ -1.84
MCF2-204ENST00000414978 SCAF11Q99590 1463 aaKnown RBP3.56□□□□□ -1.84
MCF2-204ENST00000414978 FSHRP23945 695 aa3.56□□□□□ -1.84
MCF2-204ENST00000414978 PLCB3Q01970 1234 aa3.56□□□□□ -1.84
MCF2-204ENST00000414978 EFCAB2Q5VUJ9 269 aa3.56□□□□□ -1.84
MCF2-204ENST00000414978 BCCIPQ9P287 314 aaKnown RBP eCLIP3.56□□□□□ -1.84
MCF2-204ENST00000414978 NALCNQ8IZF0 1738 aa3.56□□□□□ -1.84
MCF2-204ENST00000414978 SIPA1L2Q9P2F8 1722 aaPredicted RBP3.56□□□□□ -1.84
MCF2-204ENST00000414978 SYCP2Q9BX26 1530 aa3.56□□□□□ -1.84
MCF2-204ENST00000414978 ATAD2Q6PL18 1390 aa3.56□□□□□ -1.84
MCF2-204ENST00000414978 TNRQ92752 1358 aa3.56□□□□□ -1.84
MCF2-204ENST00000414978 C16orf46Q6P387 395 aa3.56□□□□□ -1.84
MCF2-204ENST00000414978 VASH1Q7L8A9 365 aaPredicted RBP3.56□□□□□ -1.84
MCF2-204ENST00000414978 PMM1Q92871 262 aa3.56□□□□□ -1.84
MCF2-204ENST00000414978 PRKD2Q9BZL6 878 aa3.56□□□□□ -1.84
MCF2-204ENST00000414978 G3BP2Q9UN86 482 aaKnown RBP3.56□□□□□ -1.84
MCF2-204ENST00000414978 FAN1Q9Y2M0 1017 aa3.56□□□□□ -1.84
MCF2-204ENST00000414978 TMA7Q9Y2S6 64 aaKnown RBP3.56□□□□□ -1.84
MCF2-204ENST00000414978 USP3Q9Y6I4 520 aa3.56□□□□□ -1.84
MCF2-204ENST00000414978 TNS1Q9HBL0 1735 aaKnown RBP3.56□□□□□ -1.84
MCF2-204ENST00000414978 ERVH48-1M5A8F1 160 aa3.56□□□□□ -1.84
MCF2-204ENST00000414978 NR1I2O75469 434 aa3.56□□□□□ -1.84
MCF2-204ENST00000414978 FGRP09769 529 aa3.56□□□□□ -1.84
MCF2-204ENST00000414978 EMP3P54852 163 aa3.56□□□□□ -1.84
MCF2-204ENST00000414978 MAP3K11Q16584 847 aa3.56□□□□□ -1.84
MCF2-204ENST00000414978 TTC16Q8NEE8 873 aa3.56□□□□□ -1.84
MCF2-204ENST00000414978 AIDAQ96BJ3 306 aa3.56□□□□□ -1.84
MCF2-204ENST00000414978 LRFN2Q9ULH4 789 aa3.56□□□□□ -1.84
MCF2-204ENST00000414978 EPB41L3Q9Y2J2 1087 aaPredicted RBP3.56□□□□□ -1.84
MCF2-204ENST00000414978 XRN1Q8IZH2 1706 aaKnown RBP3.56□□□□□ -1.84
MCF2-204ENST00000414978 NWD2Q9ULI1 1742 aa3.56□□□□□ -1.84
MCF2-204ENST00000414978 EEA1Q15075 1411 aa3.56□□□□□ -1.84
MCF2-204ENST00000414978 GDF10P55107 478 aa3.55□□□□□ -1.84
MCF2-204ENST00000414978 RACK1P63244 317 aaKnown RBP3.55□□□□□ -1.84
MCF2-204ENST00000414978 AMPD3Q01432 767 aa3.55□□□□□ -1.84
MCF2-204ENST00000414978 SF3B2Q13435 895 aaKnown RBP3.55□□□□□ -1.84
MCF2-204ENST00000414978 COX20Q5RI15 118 aa3.55□□□□□ -1.84
MCF2-204ENST00000414978 SDE2Q6IQ49 451 aa3.55□□□□□ -1.84
MCF2-204ENST00000414978 USP48Q86UV5 1035 aa3.55□□□□□ -1.84
MCF2-204ENST00000414978 ANKK1Q8NFD2 765 aa3.55□□□□□ -1.84
MCF2-204ENST00000414978 KCTD15Q96SI1 283 aaPredicted RBP3.55□□□□□ -1.84
MCF2-204ENST00000414978 BCL9LQ86UU0 1499 aa3.55□□□□□ -1.84
MCF2-204ENST00000414978 RGS12O14924 1447 aa3.55□□□□□ -1.84
MCF2-204ENST00000414978 ADGRB3O60242 1522 aa3.55□□□□□ -1.84
MCF2-204ENST00000414978 FAM13AO94988 1023 aa3.55□□□□□ -1.84
MCF2-204ENST00000414978 S1PR4O95977 384 aa3.55□□□□□ -1.84
MCF2-204ENST00000414978 POLR3DP05423 398 aaPredicted RBP3.55□□□□□ -1.84
MCF2-204ENST00000414978 MZF1P28698 734 aaPredicted RBP3.55□□□□□ -1.84
MCF2-204ENST00000414978 WEE1P30291 646 aa3.55□□□□□ -1.84
MCF2-204ENST00000414978 BPHLQ86WA6 291 aaPredicted RBP3.55□□□□□ -1.84
MCF2-204ENST00000414978 EDEM1Q92611 657 aa3.55□□□□□ -1.84
MCF2-204ENST00000414978 WNT2BQ93097 391 aa3.55□□□□□ -1.84
MCF2-204ENST00000414978 THAP11Q96EK4 314 aa3.55□□□□□ -1.84
MCF2-204ENST00000414978 BUD13Q9BRD0 619 aaKnown RBP eCLIP3.55□□□□□ -1.84
MCF2-204ENST00000414978 SRA1Q9HD15 236 aaKnown RBP3.55□□□□□ -1.84
MCF2-204ENST00000414978 ERVK-7P63135 1459 aa3.55□□□□□ -1.84
MCF2-204ENST00000414978 DCCP43146 1447 aa3.55□□□□□ -1.84
MCF2-204ENST00000414978 ARHGAP31Q2M1Z3 1444 aa3.55□□□□□ -1.84
MCF2-204ENST00000414978 PIK3C2BO00750 1634 aa3.55□□□□□ -1.84
MCF2-204ENST00000414978 BRWD3Q6RI45 1802 aa3.55□□□□□ -1.84
MCF2-204ENST00000414978 COL24A1Q17RW2 1714 aa3.55□□□□□ -1.84
MCF2-204ENST00000414978 MINDY4BA8MYZ0 360 aa3.55□□□□□ -1.84
MCF2-204ENST00000414978 TMEM229AB2RXF0 380 aa3.55□□□□□ -1.84
MCF2-204ENST00000414978 TREHO43280 583 aa3.55□□□□□ -1.84
MCF2-204ENST00000414978 DGKZQ13574 1117 aa3.55□□□□□ -1.84
MCF2-204ENST00000414978 LARP7Q4G0J3 582 aaKnown RBP eCLIP3.55□□□□□ -1.84
MCF2-204ENST00000414978 TLL2Q9Y6L7 1015 aa3.55□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms