RNA–Protein interactions for RNA: ENST00000414963.2

SF3B1-204, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 1 (best) BASIC

Gene SF3B1, Length 651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-204ENST00000414963 R3HDM1Q15032 1099 aaKnown RBP17.71■□□□□ 0.43
SF3B1-204ENST00000414963 CCDC152Q4G0S7 254 aa17.71■□□□□ 0.43
SF3B1-204ENST00000414963 MSL1Q68DK7 614 aa17.71■□□□□ 0.43
SF3B1-204ENST00000414963 NLRP3Q96P20 1036 aa17.71■□□□□ 0.43
SF3B1-204ENST00000414963 LAMB2P55268 1798 aa17.71■□□□□ 0.43
SF3B1-204ENST00000414963 DDX60Q8IY21 1712 aaKnown RBP17.7■□□□□ 0.42
SF3B1-204ENST00000414963 NRXN2Q9P2S2 1712 aa17.7■□□□□ 0.42
SF3B1-204ENST00000414963 KLRG2A4D1S0 409 aaPredicted RBP17.7■□□□□ 0.42
SF3B1-204ENST00000414963 IFIT5Q13325 482 aaKnown RBP17.7■□□□□ 0.42
SF3B1-204ENST00000414963 CCDC57Q2TAC2 916 aa17.7■□□□□ 0.42
SF3B1-204ENST00000414963 HSP90AB4PQ58FF6 505 aa17.7■□□□□ 0.42
SF3B1-204ENST00000414963 GREM2Q9H772 168 aa17.7■□□□□ 0.42
SF3B1-204ENST00000414963 FBXO3Q9UK99 471 aa17.7■□□□□ 0.42
SF3B1-204ENST00000414963 NPHP1O15259 732 aa17.69■□□□□ 0.42
SF3B1-204ENST00000414963 RAB11FIP3O75154 756 aa17.69■□□□□ 0.42
SF3B1-204ENST00000414963 SURF6O75683 361 aaKnown RBP17.69■□□□□ 0.42
SF3B1-204ENST00000414963 FAM161AQ3B820 660 aa17.69■□□□□ 0.42
SF3B1-204ENST00000414963 C3orf67Q6ZVT6 689 aa17.69■□□□□ 0.42
SF3B1-204ENST00000414963 BRIP1Q9BX63 1249 aa17.69■□□□□ 0.42
SF3B1-204ENST00000414963 MTFR1LQ9H019 292 aa17.69■□□□□ 0.42
SF3B1-204ENST00000414963 CASZ1Q86V15 1759 aa17.68■□□□□ 0.42
SF3B1-204ENST00000414963 ANKRD18BA2A2Z9 1011 aa17.68■□□□□ 0.42
SF3B1-204ENST00000414963 ITGA6P23229 1130 aa17.68■□□□□ 0.42
SF3B1-204ENST00000414963 NUCB1Q02818 461 aa17.68■□□□□ 0.42
SF3B1-204ENST00000414963 CRY2Q49AN0 593 aa17.68■□□□□ 0.42
SF3B1-204ENST00000414963 CHMP3Q9Y3E7 222 aa17.68■□□□□ 0.42
SF3B1-204ENST00000414963 CIAO1O76071 339 aa17.67■□□□□ 0.42
SF3B1-204ENST00000414963 CCDC24Q8N4L8 307 aa17.67■□□□□ 0.42
SF3B1-204ENST00000414963 PA2G4Q9UQ80 394 aaKnown RBP17.67■□□□□ 0.42
SF3B1-204ENST00000414963 EXOC6BQ9Y2D4 811 aa17.67■□□□□ 0.42
SF3B1-204ENST00000414963 ERC1Q8IUD2 1116 aa17.66■□□□□ 0.42
SF3B1-204ENST00000414963 MYH3P11055 1940 aa17.65■□□□□ 0.42
SF3B1-204ENST00000414963 G3BP1Q13283 466 aaKnown RBP eCLIP17.65■□□□□ 0.42
SF3B1-204ENST00000414963 KLHDC4Q8TBB5 520 aa17.65■□□□□ 0.42
SF3B1-204ENST00000414963 CCDC85AQ96PX6 553 aaPredicted RBP17.65■□□□□ 0.42
SF3B1-204ENST00000414963 PDZRN3Q9UPQ7 1066 aa17.65■□□□□ 0.42
SF3B1-204ENST00000414963 EYA2O00167 538 aa17.64■□□□□ 0.41
SF3B1-204ENST00000414963 HOXA10P31260 410 aaPredicted RBP17.64■□□□□ 0.41
SF3B1-204ENST00000414963 PDE6BP35913 854 aa17.64■□□□□ 0.41
SF3B1-204ENST00000414963 ANKRD45Q5TZF3 282 aa17.64■□□□□ 0.41
SF3B1-204ENST00000414963 ATG9AQ7Z3C6 839 aa17.64■□□□□ 0.41
SF3B1-204ENST00000414963 CHD1LQ86WJ1 897 aa17.64■□□□□ 0.41
SF3B1-204ENST00000414963 KIF1BPQ96EK5 621 aa17.64■□□□□ 0.41
SF3B1-204ENST00000414963 CDC5LQ99459 802 aaKnown RBP17.64■□□□□ 0.41
SF3B1-204ENST00000414963 LRRCC1Q9C099 1032 aa17.64■□□□□ 0.41
SF3B1-204ENST00000414963 SEC31BQ9NQW1 1179 aa17.64■□□□□ 0.41
SF3B1-204ENST00000414963 ZBTB7AO95365 584 aa17.63■□□□□ 0.41
SF3B1-204ENST00000414963 IL15P40933 162 aaPredicted RBP17.63■□□□□ 0.41
SF3B1-204ENST00000414963 TAF7LQ5H9L4 462 aa17.63■□□□□ 0.41
SF3B1-204ENST00000414963 RHPN1Q8TCX5 695 aa17.63■□□□□ 0.41
SF3B1-204ENST00000414963 ZNF594Q96JF6 807 aaPredicted RBP17.63■□□□□ 0.41
SF3B1-204ENST00000414963 RIPOR2Q9Y4F9 1068 aa17.63■□□□□ 0.41
SF3B1-204ENST00000414963 PSDA5PKW4 1024 aaPredicted RBP17.62■□□□□ 0.41
SF3B1-204ENST00000414963 SASH1O94885 1247 aa17.62■□□□□ 0.41
SF3B1-204ENST00000414963 LDHAL6AQ6ZMR3 332 aa17.62■□□□□ 0.41
SF3B1-204ENST00000414963 DDX46Q7L014 1031 aaKnown RBP17.62■□□□□ 0.41
SF3B1-204ENST00000414963 CRAMP1Q96RY5 1269 aa17.62■□□□□ 0.41
SF3B1-204ENST00000414963 SGIP1Q9BQI5 828 aa17.62■□□□□ 0.41
SF3B1-204ENST00000414963 SIL1Q9H173 461 aa17.62■□□□□ 0.41
SF3B1-204ENST00000414963 TNRC6CQ9HCJ0 1690 aaKnown RBP17.61■□□□□ 0.41
SF3B1-204ENST00000414963 SRGNP10124 158 aa17.61■□□□□ 0.41
SF3B1-204ENST00000414963 POLD1P28340 1107 aa17.61■□□□□ 0.41
SF3B1-204ENST00000414963 RPS8P62241 208 aaKnown RBP17.61■□□□□ 0.41
SF3B1-204ENST00000414963 OS9Q13438 667 aaPredicted RBP17.61■□□□□ 0.41
SF3B1-204ENST00000414963 PUS3Q9BZE2 481 aaKnown RBP17.61■□□□□ 0.41
SF3B1-204ENST00000414963 BSDC1Q9NW68 430 aaPredicted RBP17.61■□□□□ 0.41
SF3B1-204ENST00000414963 ATF5Q9Y2D1 282 aaPredicted RBP17.61■□□□□ 0.41
SF3B1-204ENST00000414963 IGHMBP2P38935 993 aaKnown RBP17.6■□□□□ 0.41
SF3B1-204ENST00000414963 LRRC24Q50LG9 513 aa17.6■□□□□ 0.41
SF3B1-204ENST00000414963 ANKRD18AQ8IVF6 992 aa17.6■□□□□ 0.41
SF3B1-204ENST00000414963 RPGRQ92834 1020 aaKnown RBP17.6■□□□□ 0.41
SF3B1-204ENST00000414963 RBM17Q96I25 401 aaKnown RBP17.6■□□□□ 0.41
SF3B1-204ENST00000414963 GPR108Q9NPR9 543 aa17.6■□□□□ 0.41
SF3B1-204ENST00000414963 ZBTB47Q9UFB7 747 aaPredicted RBP17.6■□□□□ 0.41
SF3B1-204ENST00000414963 C10orf71Q711Q0 1435 aa17.6■□□□□ 0.41
SF3B1-204ENST00000414963 LRP5O75197 1615 aa17.6■□□□□ 0.41
SF3B1-204ENST00000414963 NPR1P16066 1061 aa17.59■□□□□ 0.41
SF3B1-204ENST00000414963 PTGER2P43116 358 aa17.59■□□□□ 0.41
SF3B1-204ENST00000414963 GRAPQ13588 217 aa17.59■□□□□ 0.41
SF3B1-204ENST00000414963 GRAPLQ8TC17 118 aaPredicted RBP17.59■□□□□ 0.41
SF3B1-204ENST00000414963 CELF1Q92879 486 aaKnown RBP17.59■□□□□ 0.41
SF3B1-204ENST00000414963 MPHOSPH8Q99549 860 aa17.59■□□□□ 0.41
SF3B1-204ENST00000414963 LNPKQ9C0E8 428 aa17.59■□□□□ 0.41
SF3B1-204ENST00000414963 CNNM1Q9NRU3 951 aa17.59■□□□□ 0.41
SF3B1-204ENST00000414963 ANKRD31Q8N7Z5 1873 aa17.58■□□□□ 0.41
SF3B1-204ENST00000414963 MROH5Q6ZUA9 1318 aa17.58■□□□□ 0.4
SF3B1-204ENST00000414963 APBB1O00213 710 aa17.58■□□□□ 0.4
SF3B1-204ENST00000414963 SMARCA5O60264 1052 aaPredicted RBP17.58■□□□□ 0.4
SF3B1-204ENST00000414963 BBOX1O75936 387 aa17.58■□□□□ 0.4
SF3B1-204ENST00000414963 TFCP2Q12800 502 aa17.58■□□□□ 0.4
SF3B1-204ENST00000414963 H0YIN7 160 aa17.57■□□□□ 0.4
SF3B1-204ENST00000414963 PDE4AP27815 886 aa17.57■□□□□ 0.4
SF3B1-204ENST00000414963 STYK1Q6J9G0 422 aa17.57■□□□□ 0.4
SF3B1-204ENST00000414963 MASTLQ96GX5 879 aa17.57■□□□□ 0.4
SF3B1-204ENST00000414963 CEP126Q9P2H0 1117 aa17.57■□□□□ 0.4
SF3B1-204ENST00000414963 ALDH1B1P30837 517 aa17.56■□□□□ 0.4
SF3B1-204ENST00000414963 TMC4Q7Z404 712 aa17.56■□□□□ 0.4
SF3B1-204ENST00000414963 C2CD5Q86YS7 1000 aa17.56■□□□□ 0.4
SF3B1-204ENST00000414963 CLASRPQ8N2M8 674 aaKnown RBP17.56■□□□□ 0.4
SF3B1-204ENST00000414963 VGLL2Q8N8G2 317 aa17.56■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 168.6 ms