RNA–Protein interactions for RNA: ENST00000413578.5

LIMS2-210, Transcript of LIM zinc finger domain containing 2, humanhuman

TSL 3

Gene LIMS2, Length 930 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS2-210ENST00000413578 GRAPQ13588 217 aa15.98■□□□□ 0.15
LIMS2-210ENST00000413578 CIAPIN1Q6FI81 312 aa15.98■□□□□ 0.15
LIMS2-210ENST00000413578 GRAPLQ8TC17 118 aaPredicted RBP15.98■□□□□ 0.15
LIMS2-210ENST00000413578 HHIPL1Q96JK4 782 aa15.98■□□□□ 0.15
LIMS2-210ENST00000413578 TMX4Q9H1E5 349 aaPredicted RBP15.98■□□□□ 0.15
LIMS2-210ENST00000413578 SH3TC1Q8TE82 1336 aa15.97■□□□□ 0.15
LIMS2-210ENST00000413578 YDJCA8MPS7 323 aa15.97■□□□□ 0.15
LIMS2-210ENST00000413578 CHL1O00533 1208 aa15.97■□□□□ 0.15
LIMS2-210ENST00000413578 MAP2K2P36507 400 aa15.97■□□□□ 0.15
LIMS2-210ENST00000413578 TRPM4Q8TD43 1214 aa15.97■□□□□ 0.15
LIMS2-210ENST00000413578 ZC3H15Q8WU90 426 aaKnown RBP15.97■□□□□ 0.15
LIMS2-210ENST00000413578 GLIS2Q9BZE0 524 aaPredicted RBP15.97■□□□□ 0.15
LIMS2-210ENST00000413578 AOC2O75106 756 aa15.96■□□□□ 0.15
LIMS2-210ENST00000413578 RAD17O75943 681 aa15.96■□□□□ 0.15
LIMS2-210ENST00000413578 CELF2O95319 508 aaKnown RBP15.96■□□□□ 0.15
LIMS2-210ENST00000413578 LMOD3Q0VAK6 560 aa15.96■□□□□ 0.15
LIMS2-210ENST00000413578 AIMP1Q12904 312 aaKnown RBP15.96■□□□□ 0.15
LIMS2-210ENST00000413578 KRT24Q2M2I5 525 aa15.96■□□□□ 0.15
LIMS2-210ENST00000413578 DDX46Q7L014 1031 aaKnown RBP15.96■□□□□ 0.15
LIMS2-210ENST00000413578 TRMT112Q9UI30 125 aaKnown RBP15.96■□□□□ 0.15
LIMS2-210ENST00000413578 SHTN1A0MZ66 631 aa15.95■□□□□ 0.14
LIMS2-210ENST00000413578 TNIP1Q15025 636 aa15.95■□□□□ 0.14
LIMS2-210ENST00000413578 PAXIP1Q6ZW49 1069 aaPredicted RBP15.95■□□□□ 0.14
LIMS2-210ENST00000413578 TMC4Q7Z404 712 aa15.95■□□□□ 0.14
LIMS2-210ENST00000413578 NECTIN2Q92692 538 aa15.95■□□□□ 0.14
LIMS2-210ENST00000413578 ANKRD36CQ5JPF3 1778 aa15.95■□□□□ 0.14
LIMS2-210ENST00000413578 LRRC37AA6NMS7 1700 aa15.94■□□□□ 0.14
LIMS2-210ENST00000413578 GRM1Q13255 1194 aa15.94■□□□□ 0.14
LIMS2-210ENST00000413578 RALBP1Q15311 655 aa15.94■□□□□ 0.14
LIMS2-210ENST00000413578 BEGAINQ9BUH8 593 aa15.94■□□□□ 0.14
LIMS2-210ENST00000413578 LAMB2P55268 1798 aa15.94■□□□□ 0.14
LIMS2-210ENST00000413578 TRPM7Q96QT4 1865 aa15.94■□□□□ 0.14
LIMS2-210ENST00000413578 SF3B3Q15393 1217 aaKnown RBP15.93■□□□□ 0.14
LIMS2-210ENST00000413578 DPF2Q92785 391 aa15.93■□□□□ 0.14
LIMS2-210ENST00000413578 ISCA1Q9BUE6 129 aa15.93■□□□□ 0.14
LIMS2-210ENST00000413578 CHPF2Q9P2E5 772 aa15.93■□□□□ 0.14
LIMS2-210ENST00000413578 CNOT7Q9UIV1 285 aaKnown RBP15.93■□□□□ 0.14
LIMS2-210ENST00000413578 TRIM35Q9UPQ4 493 aa15.93■□□□□ 0.14
LIMS2-210ENST00000413578 CA12O43570 354 aa15.92■□□□□ 0.14
LIMS2-210ENST00000413578 HOXB7P09629 217 aa15.92■□□□□ 0.14
LIMS2-210ENST00000413578 BRPF1P55201 1214 aaPredicted RBP15.92■□□□□ 0.14
LIMS2-210ENST00000413578 CDC37L1Q7L3B6 337 aa15.92■□□□□ 0.14
LIMS2-210ENST00000413578 MICALL2Q8IY33 904 aa15.92■□□□□ 0.14
LIMS2-210ENST00000413578 PLBD2Q8NHP8 589 aa15.92■□□□□ 0.14
LIMS2-210ENST00000413578 CELF1Q92879 486 aaKnown RBP15.92■□□□□ 0.14
LIMS2-210ENST00000413578 BCL2L13Q9BXK5 485 aa15.92■□□□□ 0.14
LIMS2-210ENST00000413578 TSKSQ9UJT2 592 aa15.92■□□□□ 0.14
LIMS2-210ENST00000413578 COL4A1P02462 1669 aa15.92■□□□□ 0.14
LIMS2-210ENST00000413578 RGS19P49795 217 aa15.91■□□□□ 0.14
LIMS2-210ENST00000413578 ZBTB12Q9Y330 459 aaPredicted RBP15.91■□□□□ 0.14
LIMS2-210ENST00000413578 PSMD14O00487 310 aa15.9■□□□□ 0.14
LIMS2-210ENST00000413578 TRIM28Q13263 835 aaKnown RBP15.9■□□□□ 0.14
LIMS2-210ENST00000413578 FAM161AQ3B820 660 aa15.9■□□□□ 0.14
LIMS2-210ENST00000413578 FAM89AQ96GI7 184 aa15.9■□□□□ 0.14
LIMS2-210ENST00000413578 POLLQ9UGP5 575 aa15.9■□□□□ 0.14
LIMS2-210ENST00000413578 RTL9Q8NET4 1388 aa15.89■□□□□ 0.13
LIMS2-210ENST00000413578 DDX60Q8IY21 1712 aaKnown RBP15.89■□□□□ 0.13
LIMS2-210ENST00000413578 EGFRP00533 1210 aa15.89■□□□□ 0.13
LIMS2-210ENST00000413578 WASHC4Q2M389 1173 aa15.89■□□□□ 0.13
LIMS2-210ENST00000413578 HDGFL1Q5TGJ6 251 aa15.89■□□□□ 0.13
LIMS2-210ENST00000413578 DLK2Q6UY11 383 aa15.89■□□□□ 0.13
LIMS2-210ENST00000413578 ANKRD13DQ6ZTN6 518 aa15.89■□□□□ 0.13
LIMS2-210ENST00000413578 ZIC5Q96T25 663 aa15.89■□□□□ 0.13
LIMS2-210ENST00000413578 H7C1D1 291 aa15.88■□□□□ 0.13
LIMS2-210ENST00000413578 GPSM2P81274 684 aa15.88■□□□□ 0.13
LIMS2-210ENST00000413578 SAMD7Q7Z3H4 446 aa15.88■□□□□ 0.13
LIMS2-210ENST00000413578 USP48Q86UV5 1035 aa15.88■□□□□ 0.13
LIMS2-210ENST00000413578 CCDC146Q8IYE0 955 aa15.88■□□□□ 0.13
LIMS2-210ENST00000413578 ZNF428Q96B54 188 aa15.88■□□□□ 0.13
LIMS2-210ENST00000413578 ZNF408Q9H9D4 720 aa15.88■□□□□ 0.13
LIMS2-210ENST00000413578 DBNDD1Q9H9R9 158 aa15.88■□□□□ 0.13
LIMS2-210ENST00000413578 KCNQ5Q9NR82 932 aa15.88■□□□□ 0.13
LIMS2-210ENST00000413578 DBF4Q9UBU7 674 aaPredicted RBP15.88■□□□□ 0.13
LIMS2-210ENST00000413578 NSFL1CQ9UNZ2 370 aaKnown RBP15.88■□□□□ 0.13
LIMS2-210ENST00000413578 FAM155AB1AL88 458 aaPredicted RBP15.87■□□□□ 0.13
LIMS2-210ENST00000413578 ATP5J2-PTCD1G3V325 749 aa15.87■□□□□ 0.13
LIMS2-210ENST00000413578 RPS12P25398 132 aaKnown RBP15.87■□□□□ 0.13
LIMS2-210ENST00000413578 NOGQ13253 232 aa15.87■□□□□ 0.13
LIMS2-210ENST00000413578 NEUROD2Q15784 382 aa15.87■□□□□ 0.13
LIMS2-210ENST00000413578 RUNDC1Q96C34 613 aa15.87■□□□□ 0.13
LIMS2-210ENST00000413578 MCOLN1Q9GZU1 580 aa15.87■□□□□ 0.13
LIMS2-210ENST00000413578 MYBBP1AQ9BQG0 1328 aaKnown RBP15.87■□□□□ 0.13
LIMS2-210ENST00000413578 TAF1P21675 1872 aa15.86■□□□□ 0.13
LIMS2-210ENST00000413578 ECE2O60344 883 aa15.86■□□□□ 0.13
LIMS2-210ENST00000413578 HUNKP57058 714 aa15.86■□□□□ 0.13
LIMS2-210ENST00000413578 TBC1D10BQ4KMP7 808 aaPredicted RBP15.86■□□□□ 0.13
LIMS2-210ENST00000413578 TBC1D16Q8TBP0 767 aa15.86■□□□□ 0.13
LIMS2-210ENST00000413578 CFAP44Q96MT7 982 aa15.86■□□□□ 0.13
LIMS2-210ENST00000413578 HYPKQ9NX55 129 aa15.86■□□□□ 0.13
LIMS2-210ENST00000413578 PODXL2Q9NZ53 605 aa15.86■□□□□ 0.13
LIMS2-210ENST00000413578 CCDC85CA6NKD9 419 aa15.85■□□□□ 0.13
LIMS2-210ENST00000413578 IRS4O14654 1257 aaPredicted RBP15.85■□□□□ 0.13
LIMS2-210ENST00000413578 SLC34A2O95436 690 aa15.85■□□□□ 0.13
LIMS2-210ENST00000413578 KRT26Q7Z3Y9 468 aa15.85■□□□□ 0.13
LIMS2-210ENST00000413578 ZNF609O15014 1411 aa15.85■□□□□ 0.13
LIMS2-210ENST00000413578 RIMBP2O15034 1052 aa15.84■□□□□ 0.13
LIMS2-210ENST00000413578 VIL1P09327 827 aaKnown RBP15.84■□□□□ 0.13
LIMS2-210ENST00000413578 ZNF853P0CG23 659 aa15.84■□□□□ 0.13
LIMS2-210ENST00000413578 RPS8P62241 208 aaKnown RBP15.84■□□□□ 0.13
LIMS2-210ENST00000413578 DUSP27Q5VZP5 1158 aa15.84■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms