RNA–Protein interactions for RNA: ENST00000409945.1

USP40-202, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-202ENST00000409945 BRPF3Q9ULD4 1205 aa9.79□□□□□ -0.84
USP40-202ENST00000409945 AMOTL2Q9Y2J4 779 aa9.79□□□□□ -0.84
USP40-202ENST00000409945 PPRC1Q5VV67 1664 aaKnown RBP9.79□□□□□ -0.84
USP40-202ENST00000409945 CASKIN1Q8WXD9 1431 aa9.78□□□□□ -0.84
USP40-202ENST00000409945 MICAL2O94851 1124 aa9.78□□□□□ -0.84
USP40-202ENST00000409945 TRIP4Q15650 581 aaPredicted RBP9.78□□□□□ -0.84
USP40-202ENST00000409945 CTC1Q2NKJ3 1217 aa9.78□□□□□ -0.84
USP40-202ENST00000409945 ARSJQ5FYB0 599 aaPredicted RBP9.78□□□□□ -0.84
USP40-202ENST00000409945 NUDT16Q96DE0 195 aaKnown RBP9.78□□□□□ -0.84
USP40-202ENST00000409945 FAM129BQ96TA1 746 aa9.78□□□□□ -0.84
USP40-202ENST00000409945 BICDL1Q6ZP65 573 aa9.78□□□□□ -0.84
USP40-202ENST00000409945 GJD3Q8N144 294 aa9.78□□□□□ -0.84
USP40-202ENST00000409945 WWC3Q9ULE0 1092 aa9.78□□□□□ -0.84
USP40-202ENST00000409945 FYCO1Q9BQS8 1478 aa9.77□□□□□ -0.84
USP40-202ENST00000409945 TGFBR3LH3BV60 316 aa9.77□□□□□ -0.85
USP40-202ENST00000409945 TREHO43280 583 aa9.77□□□□□ -0.85
USP40-202ENST00000409945 ABTB2Q8N961 1025 aa9.77□□□□□ -0.85
USP40-202ENST00000409945 CUEDC1Q9NWM3 386 aaPredicted RBP9.77□□□□□ -0.85
USP40-202ENST00000409945 CDK13Q14004 1512 aaKnown RBP9.77□□□□□ -0.85
USP40-202ENST00000409945 CFAP74Q9C0B2 1584 aa9.76□□□□□ -0.85
USP40-202ENST00000409945 NDUFB5O43674 189 aa9.76□□□□□ -0.85
USP40-202ENST00000409945 IDH3AP50213 366 aa9.76□□□□□ -0.85
USP40-202ENST00000409945 DSC3Q14574 896 aa9.76□□□□□ -0.85
USP40-202ENST00000409945 GRIN2CQ14957 1233 aa9.76□□□□□ -0.85
USP40-202ENST00000409945 TMC1Q8TDI8 760 aa9.76□□□□□ -0.85
USP40-202ENST00000409945 NEO1Q92859 1461 aa9.76□□□□□ -0.85
USP40-202ENST00000409945 CEP162Q5TB80 1403 aa9.76□□□□□ -0.85
USP40-202ENST00000409945 A0A1B0GTH6 734 aa9.76□□□□□ -0.85
USP40-202ENST00000409945 A0A1W2PNR3 127 aa9.76□□□□□ -0.85
USP40-202ENST00000409945 BTLAQ7Z6A9 289 aa9.76□□□□□ -0.85
USP40-202ENST00000409945 GAS2L1Q99501 681 aaPredicted RBP9.76□□□□□ -0.85
USP40-202ENST00000409945 INPP5BP32019 993 aa9.75□□□□□ -0.85
USP40-202ENST00000409945 WDR44Q5JSH3 913 aa9.75□□□□□ -0.85
USP40-202ENST00000409945 KIF14Q15058 1648 aa9.75□□□□□ -0.85
USP40-202ENST00000409945 PCF11O94913 1555 aaKnown RBP9.75□□□□□ -0.85
USP40-202ENST00000409945 TATP17735 454 aaPredicted RBP9.74□□□□□ -0.85
USP40-202ENST00000409945 ORC1Q13415 861 aa9.74□□□□□ -0.85
USP40-202ENST00000409945 ZCCHC2Q9C0B9 1178 aaKnown RBP9.74□□□□□ -0.85
USP40-202ENST00000409945 TROQ12816 1431 aaPredicted RBP9.74□□□□□ -0.85
USP40-202ENST00000409945 MAN1A2O60476 641 aa9.74□□□□□ -0.85
USP40-202ENST00000409945 TYRO3Q06418 890 aa9.74□□□□□ -0.85
USP40-202ENST00000409945 FMR1Q06787 632 aaKnown RBP eCLIP9.74□□□□□ -0.85
USP40-202ENST00000409945 FAM161BQ96MY7 647 aa9.74□□□□□ -0.85
USP40-202ENST00000409945 NIF3L1Q9GZT8 377 aa9.74□□□□□ -0.85
USP40-202ENST00000409945 MZF1P28698 734 aaPredicted RBP9.73□□□□□ -0.85
USP40-202ENST00000409945 PTSQ03393 145 aa9.73□□□□□ -0.85
USP40-202ENST00000409945 EHHADHQ08426 723 aa9.73□□□□□ -0.85
USP40-202ENST00000409945 ALKBH2Q6NS38 261 aa9.73□□□□□ -0.85
USP40-202ENST00000409945 ZSCAN29Q8IWY8 852 aaPredicted RBP9.73□□□□□ -0.85
USP40-202ENST00000409945 KCNMB2Q9Y691 235 aa9.73□□□□□ -0.85
USP40-202ENST00000409945 ARAP3Q8WWN8 1544 aa9.73□□□□□ -0.85
USP40-202ENST00000409945 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP9.72□□□□□ -0.85
USP40-202ENST00000409945 UBAP2LQ14157 1087 aaKnown RBP9.72□□□□□ -0.85
USP40-202ENST00000409945 C8orf34Q49A92 452 aa9.72□□□□□ -0.85
USP40-202ENST00000409945 EFCAB2Q5VUJ9 269 aa9.72□□□□□ -0.85
USP40-202ENST00000409945 DYRK1BQ9Y463 629 aa9.72□□□□□ -0.85
USP40-202ENST00000409945 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP9.72□□□□□ -0.85
USP40-202ENST00000409945 FANCAO15360 1455 aa9.72□□□□□ -0.85
USP40-202ENST00000409945 MAPK8P45983 427 aa9.72□□□□□ -0.85
USP40-202ENST00000409945 GMPR2Q9P2T1 348 aaKnown RBP9.72□□□□□ -0.85
USP40-202ENST00000409945 LOC105371045A0A1W2PR82 267 aa9.71□□□□□ -0.86
USP40-202ENST00000409945 SNRPBP14678 240 aaKnown RBP9.71□□□□□ -0.86
USP40-202ENST00000409945 MRRFQ96E11 262 aaKnown RBP9.71□□□□□ -0.86
USP40-202ENST00000409945 CFHR5Q9BXR6 569 aa9.71□□□□□ -0.86
USP40-202ENST00000409945 RTCBQ9Y3I0 505 aaKnown RBP9.71□□□□□ -0.86
USP40-202ENST00000409945 MYO5CQ9NQX4 1742 aa9.71□□□□□ -0.86
USP40-202ENST00000409945 MTUS2Q5JR59 1369 aa9.7□□□□□ -0.86
USP40-202ENST00000409945 POTECB2RU33 542 aa9.7□□□□□ -0.86
USP40-202ENST00000409945 ERCC3P19447 782 aa9.7□□□□□ -0.86
USP40-202ENST00000409945 ZNF800Q2TB10 664 aaPredicted RBP eCLIP9.7□□□□□ -0.86
USP40-202ENST00000409945 CRISPLD1Q9H336 500 aa9.7□□□□□ -0.86
USP40-202ENST00000409945 PLCH2O75038 1416 aa9.7□□□□□ -0.86
USP40-202ENST00000409945 AKNAQ7Z591 1439 aa9.7□□□□□ -0.86
USP40-202ENST00000409945 TTC37Q6PGP7 1564 aa9.7□□□□□ -0.86
USP40-202ENST00000409945 DENND4BO75064 1496 aaPredicted RBP9.7□□□□□ -0.86
USP40-202ENST00000409945 F11P03951 625 aa9.7□□□□□ -0.86
USP40-202ENST00000409945 IER5Q5VY09 327 aa9.7□□□□□ -0.86
USP40-202ENST00000409945 FOXD3Q9UJU5 478 aaPredicted RBP9.7□□□□□ -0.86
USP40-202ENST00000409945 USPL1Q5W0Q7 1092 aa9.69□□□□□ -0.86
USP40-202ENST00000409945 STRN4Q9NRL3 753 aa9.69□□□□□ -0.86
USP40-202ENST00000409945 COL17A1Q9UMD9 1497 aaPredicted RBP9.69□□□□□ -0.86
USP40-202ENST00000409945 ARHGAP5Q13017 1502 aa9.69□□□□□ -0.86
USP40-202ENST00000409945 DBN1Q16643 649 aa9.68□□□□□ -0.86
USP40-202ENST00000409945 RIPOR1Q6ZS17 1223 aa9.68□□□□□ -0.86
USP40-202ENST00000409945 CMTR1Q8N1G2 835 aaKnown RBP9.68□□□□□ -0.86
USP40-202ENST00000409945 CEP63Q96MT8 703 aa9.68□□□□□ -0.86
USP40-202ENST00000409945 TMEM63CQ9P1W3 806 aa9.68□□□□□ -0.86
USP40-202ENST00000409945 DCDC2BA2VCK2 349 aa9.68□□□□□ -0.86
USP40-202ENST00000409945 SLC35F4A4IF30 521 aa9.68□□□□□ -0.86
USP40-202ENST00000409945 EAPPQ56P03 285 aaPredicted RBP9.68□□□□□ -0.86
USP40-202ENST00000409945 ADGRL1O94910 1474 aa9.68□□□□□ -0.86
USP40-202ENST00000409945 LRRIQ1Q96JM4 1722 aa9.67□□□□□ -0.86
USP40-202ENST00000409945 RAPGEF3O95398 923 aa9.67□□□□□ -0.86
USP40-202ENST00000409945 CITED4Q96RK1 184 aa9.67□□□□□ -0.86
USP40-202ENST00000409945 ARSDP51689 593 aa9.66□□□□□ -0.86
USP40-202ENST00000409945 SFSWAPQ12872 951 aaKnown RBP9.66□□□□□ -0.86
USP40-202ENST00000409945 PI16Q6UXB8 463 aa9.66□□□□□ -0.86
USP40-202ENST00000409945 ALKBH8Q96BT7 664 aaKnown RBP9.66□□□□□ -0.86
USP40-202ENST00000409945 BRD7Q9NPI1 651 aa9.66□□□□□ -0.86
USP40-202ENST00000409945 PNMA6FA0A0J9YX94 578 aa9.66□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms