RNA–Protein interactions for RNA: ENST00000401473.7

HMGA1-204, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,887 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-204ENST00000401473 LAMB2P55268 1798 aa20.04■□□□□ 0.8
HMGA1-204ENST00000401473 KIAA1551Q9HCM1 1747 aa20.03■□□□□ 0.8
HMGA1-204ENST00000401473 CSF1RP07333 972 aa20.03■□□□□ 0.8
HMGA1-204ENST00000401473 SF3B3Q15393 1217 aaKnown RBP20.03■□□□□ 0.8
HMGA1-204ENST00000401473 LRRFIP2Q9Y608 721 aaKnown RBP20.03■□□□□ 0.8
HMGA1-204ENST00000401473 TAF1P21675 1872 aa20.03■□□□□ 0.8
HMGA1-204ENST00000401473 RIC1Q4ADV7 1423 aa20.03■□□□□ 0.8
HMGA1-204ENST00000401473 CTSWP56202 376 aa20.03■□□□□ 0.8
HMGA1-204ENST00000401473 C1orf115Q9H7X2 142 aa20.03■□□□□ 0.8
HMGA1-204ENST00000401473 LMBR1LQ6UX01 489 aa20.02■□□□□ 0.8
HMGA1-204ENST00000401473 C2CD5Q86YS7 1000 aa20.02■□□□□ 0.8
HMGA1-204ENST00000401473 ANKRD44Q8N8A2 993 aa20.02■□□□□ 0.8
HMGA1-204ENST00000401473 H0YIN7 160 aa20.01■□□□□ 0.79
HMGA1-204ENST00000401473 GNAI2P04899 355 aa20.01■□□□□ 0.79
HMGA1-204ENST00000401473 HSP90B1P14625 803 aaKnown RBP20.01■□□□□ 0.79
HMGA1-204ENST00000401473 RABL6Q3YEC7 729 aaPredicted RBP20.01■□□□□ 0.79
HMGA1-204ENST00000401473 GREM2Q9H772 168 aa20.01■□□□□ 0.79
HMGA1-204ENST00000401473 EXOC6Q8TAG9 804 aa20■□□□□ 0.79
HMGA1-204ENST00000401473 SEC31BQ9NQW1 1179 aa20■□□□□ 0.79
HMGA1-204ENST00000401473 COL11A2P13942 1736 aaPredicted RBP19.99■□□□□ 0.79
HMGA1-204ENST00000401473 HOXA10P31260 410 aaPredicted RBP19.99■□□□□ 0.79
HMGA1-204ENST00000401473 NPR1P16066 1061 aa19.98■□□□□ 0.79
HMGA1-204ENST00000401473 FAM161AQ3B820 660 aa19.98■□□□□ 0.79
HMGA1-204ENST00000401473 CCDC152Q4G0S7 254 aa19.98■□□□□ 0.79
HMGA1-204ENST00000401473 ZNF622Q969S3 477 aaKnown RBP eCLIP19.98■□□□□ 0.79
HMGA1-204ENST00000401473 MASTLQ96GX5 879 aa19.98■□□□□ 0.79
HMGA1-204ENST00000401473 COL4A1P02462 1669 aa19.97■□□□□ 0.79
HMGA1-204ENST00000401473 RPGRQ92834 1020 aaKnown RBP19.97■□□□□ 0.79
HMGA1-204ENST00000401473 PIM2Q9P1W9 311 aa19.96■□□□□ 0.79
HMGA1-204ENST00000401473 PDZRN3Q9UPQ7 1066 aa19.96■□□□□ 0.79
HMGA1-204ENST00000401473 HDAC5Q9UQL6 1122 aa19.96■□□□□ 0.79
HMGA1-204ENST00000401473 ITGA6P23229 1130 aa19.96■□□□□ 0.79
HMGA1-204ENST00000401473 CELF1Q92879 486 aaKnown RBP19.96■□□□□ 0.79
HMGA1-204ENST00000401473 CHMP3Q9Y3E7 222 aa19.96■□□□□ 0.79
HMGA1-204ENST00000401473 PNMA6EA0A0J9YXQ4 647 aa19.95■□□□□ 0.78
HMGA1-204ENST00000401473 YBX3P16989 372 aaKnown RBP eCLIP19.95■□□□□ 0.785e-37■■□□□ 14
HMGA1-204ENST00000401473 STYK1Q6J9G0 422 aa19.95■□□□□ 0.78
HMGA1-204ENST00000401473 DDX46Q7L014 1031 aaKnown RBP19.95■□□□□ 0.78
HMGA1-204ENST00000401473 SLC51AQ86UW1 340 aa19.95■□□□□ 0.78
HMGA1-204ENST00000401473 MTX1Q13505 466 aa19.94■□□□□ 0.78
HMGA1-204ENST00000401473 RBM17Q96I25 401 aaKnown RBP19.94■□□□□ 0.78
HMGA1-204ENST00000401473 CRAMP1Q96RY5 1269 aa19.94■□□□□ 0.78
HMGA1-204ENST00000401473 CHMP4BQ9H444 224 aaKnown RBP19.94■□□□□ 0.78
HMGA1-204ENST00000401473 SLX4Q8IY92 1834 aa19.94■□□□□ 0.78
HMGA1-204ENST00000401473 BRCA1P38398 1863 aaKnown RBP19.94■□□□□ 0.78
HMGA1-204ENST00000401473 CEP85Q6P2H3 762 aa19.94■□□□□ 0.78
HMGA1-204ENST00000401473 SIRT2Q8IXJ6 389 aa19.94■□□□□ 0.78
HMGA1-204ENST00000401473 ZNF594Q96JF6 807 aaPredicted RBP19.94■□□□□ 0.78
HMGA1-204ENST00000401473 DLEC1Q9Y238 1755 aa19.93■□□□□ 0.78
HMGA1-204ENST00000401473 RTL9Q8NET4 1388 aa19.93■□□□□ 0.78
HMGA1-204ENST00000401473 ALDH1B1P30837 517 aa19.93■□□□□ 0.78
HMGA1-204ENST00000401473 RFX5P48382 616 aaPredicted RBP19.93■□□□□ 0.78
HMGA1-204ENST00000401473 ATP8B2P98198 1209 aa19.93■□□□□ 0.78
HMGA1-204ENST00000401473 IFIT5Q13325 482 aaKnown RBP19.93■□□□□ 0.78
HMGA1-204ENST00000401473 CCDC57Q2TAC2 916 aa19.93■□□□□ 0.78
HMGA1-204ENST00000401473 KLHDC4Q8TBB5 520 aa19.93■□□□□ 0.78
HMGA1-204ENST00000401473 BCS1LQ9Y276 419 aa19.93■□□□□ 0.78
HMGA1-204ENST00000401473 PCDHB15Q9Y5E8 787 aa19.93■□□□□ 0.78
HMGA1-204ENST00000401473 CACNA1SQ13698 1873 aa19.92■□□□□ 0.78
HMGA1-204ENST00000401473 SRGAP3O43295 1099 aa19.92■□□□□ 0.78
HMGA1-204ENST00000401473 RPS8P62241 208 aaKnown RBP19.92■□□□□ 0.78
HMGA1-204ENST00000401473 DALRD3Q5D0E6 543 aaKnown RBP19.92■□□□□ 0.78
HMGA1-204ENST00000401473 TTLL6Q8N841 843 aa19.92■□□□□ 0.78
HMGA1-204ENST00000401473 GRAPQ13588 217 aa19.92■□□□□ 0.78
HMGA1-204ENST00000401473 PRPF40BQ6NWY9 871 aaKnown RBP19.92■□□□□ 0.78
HMGA1-204ENST00000401473 PELP1Q8IZL8 1130 aaKnown RBP19.92■□□□□ 0.78
HMGA1-204ENST00000401473 GRAPLQ8TC17 118 aaPredicted RBP19.92■□□□□ 0.78
HMGA1-204ENST00000401473 CNKSR1Q969H4 720 aa19.92■□□□□ 0.78
HMGA1-204ENST00000401473 ANKRD18BA2A2Z9 1011 aa19.91■□□□□ 0.78
HMGA1-204ENST00000401473 PTPN12Q05209 780 aaKnown RBP19.9■□□□□ 0.78
HMGA1-204ENST00000401473 OLFM4Q6UX06 510 aa19.9■□□□□ 0.78
HMGA1-204ENST00000401473 C7orf43Q8WVR3 580 aa19.9■□□□□ 0.78
HMGA1-204ENST00000401473 BBOX1O75936 387 aa19.9■□□□□ 0.78
HMGA1-204ENST00000401473 SSH3Q8TE77 659 aa19.9■□□□□ 0.78
HMGA1-204ENST00000401473 PA2G4Q9UQ80 394 aaKnown RBP19.9■□□□□ 0.78
HMGA1-204ENST00000401473 POLA2Q14181 598 aa19.89■□□□□ 0.77
HMGA1-204ENST00000401473 GPR162Q16538 588 aa19.89■□□□□ 0.77
HMGA1-204ENST00000401473 ANKRD18AQ8IVF6 992 aa19.89■□□□□ 0.77
HMGA1-204ENST00000401473 RPAP2Q8IXW5 612 aaPredicted RBP19.89■□□□□ 0.77
HMGA1-204ENST00000401473 CDC5LQ99459 802 aaKnown RBP19.89■□□□□ 0.77
HMGA1-204ENST00000401473 PUS3Q9BZE2 481 aaKnown RBP19.89■□□□□ 0.77
HMGA1-204ENST00000401473 ZNF219Q9P2Y4 722 aaPredicted RBP19.88■□□□□ 0.77
HMGA1-204ENST00000401473 C21orf2O43822 256 aa19.87■□□□□ 0.77
HMGA1-204ENST00000401473 LDHAL6AQ6ZMR3 332 aa19.87■□□□□ 0.77
HMGA1-204ENST00000401473 BSDC1Q9NW68 430 aaPredicted RBP19.87■□□□□ 0.77
HMGA1-204ENST00000401473 PPEF1O14829 653 aaPredicted RBP19.86■□□□□ 0.77
HMGA1-204ENST00000401473 LRRC24Q50LG9 513 aa19.86■□□□□ 0.77
HMGA1-204ENST00000401473 COPRSQ9NQ92 184 aa19.86■□□□□ 0.77
HMGA1-204ENST00000401473 SPEF2Q9C093 1822 aa19.86■□□□□ 0.77
HMGA1-204ENST00000401473 IGHMBP2P38935 993 aaKnown RBP19.86■□□□□ 0.77
HMGA1-204ENST00000401473 AAMPQ13685 434 aa19.86■□□□□ 0.77
HMGA1-204ENST00000401473 TAF7LQ5H9L4 462 aa19.86■□□□□ 0.77
HMGA1-204ENST00000401473 MPHOSPH8Q99549 860 aa19.86■□□□□ 0.77
HMGA1-204ENST00000401473 SIL1Q9H173 461 aa19.86■□□□□ 0.77
HMGA1-204ENST00000401473 ATP6V0A2Q9Y487 856 aa19.86■□□□□ 0.77
HMGA1-204ENST00000401473 MINPP1Q9UNW1 487 aa19.85■□□□□ 0.77
HMGA1-204ENST00000401473 RIPOR2Q9Y4F9 1068 aa19.85■□□□□ 0.77
HMGA1-204ENST00000401473 ATG9AQ7Z3C6 839 aa19.84■□□□□ 0.77
HMGA1-204ENST00000401473 SP8Q8IXZ3 490 aa19.84■□□□□ 0.77
HMGA1-204ENST00000401473 WTIPA6NIX2 430 aaPredicted RBP19.84■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms