RNA–Protein interactions for RNA: ENST00000401394.5

CTCF-202, Transcript of CCCTC-binding factor, humanhuman

TSL 1 (best) BASIC

Gene CTCF, Length 2,978 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-202ENST00000401394 G3BP1Q13283 466 aaKnown RBP eCLIP24.84■■□□□ 1.573e-6■■□□□ 11.7
CTCF-202ENST00000401394 CHST3Q7LGC8 479 aa24.84■■□□□ 1.57
CTCF-202ENST00000401394 KCNB2Q92953 911 aa24.84■■□□□ 1.57
CTCF-202ENST00000401394 TRMT1Q9NXH9 659 aaKnown RBP24.84■■□□□ 1.57
CTCF-202ENST00000401394 NPHP4O75161 1426 aaPredicted RBP24.84■■□□□ 1.57
CTCF-202ENST00000401394 LMOD2Q6P5Q4 547 aa24.84■■□□□ 1.57
CTCF-202ENST00000401394 CLIP2Q9UDT6 1046 aa24.83■■□□□ 1.57
CTCF-202ENST00000401394 HSP90B1P14625 803 aaKnown RBP24.83■■□□□ 1.56
CTCF-202ENST00000401394 DNAJC2Q99543 621 aaKnown RBP24.83■■□□□ 1.56
CTCF-202ENST00000401394 NAP1L2Q9ULW6 460 aaPredicted RBP24.83■■□□□ 1.56
CTCF-202ENST00000401394 TOPAZ1Q8N9V7 1692 aa24.83■■□□□ 1.56
CTCF-202ENST00000401394 CEMIPQ8WUJ3 1361 aa24.83■■□□□ 1.56
CTCF-202ENST00000401394 UBR1Q8IWV7 1749 aa24.82■■□□□ 1.56
CTCF-202ENST00000401394 GIGYF1O75420 1035 aaPredicted RBP24.82■■□□□ 1.56
CTCF-202ENST00000401394 DBF4Q9UBU7 674 aaPredicted RBP24.82■■□□□ 1.56
CTCF-202ENST00000401394 FILIP1Q7Z7B0 1213 aa24.81■■□□□ 1.56
CTCF-202ENST00000401394 GRM8O00222 908 aa24.81■■□□□ 1.56
CTCF-202ENST00000401394 KSR2Q6VAB6 950 aa24.81■■□□□ 1.56
CTCF-202ENST00000401394 Q6ZUG5 572 aa24.81■■□□□ 1.56
CTCF-202ENST00000401394 ANKRD7Q92527 254 aa24.81■■□□□ 1.56
CTCF-202ENST00000401394 GPATCH3Q96I76 525 aa24.81■■□□□ 1.56
CTCF-202ENST00000401394 PXDNLA1KZ92 1463 aa24.81■■□□□ 1.56
CTCF-202ENST00000401394 GOLGA6L6A8MZA4 724 aa24.81■■□□□ 1.56
CTCF-202ENST00000401394 IGKV5-2P06315 115 aa24.81■■□□□ 1.56
CTCF-202ENST00000401394 CCT2P78371 535 aaKnown RBP24.81■■□□□ 1.56
CTCF-202ENST00000401394 NCOA5Q9HCD5 579 aaKnown RBP24.81■■□□□ 1.56
CTCF-202ENST00000401394 TPD52L1Q16890 204 aaPredicted RBP24.8■■□□□ 1.56
CTCF-202ENST00000401394 PLA2G4DQ86XP0 818 aa24.8■■□□□ 1.56
CTCF-202ENST00000401394 GOLPH3LQ9H4A5 285 aa24.8■■□□□ 1.56
CTCF-202ENST00000401394 CLSTN2Q9H4D0 955 aa24.8■■□□□ 1.56
CTCF-202ENST00000401394 LRRC37A3O60309 1634 aa24.8■■□□□ 1.56
CTCF-202ENST00000401394 TAF5LO75529 589 aa24.8■■□□□ 1.56
CTCF-202ENST00000401394 DDX46Q7L014 1031 aaKnown RBP24.8■■□□□ 1.56
CTCF-202ENST00000401394 MTX1Q13505 466 aa24.79■■□□□ 1.56
CTCF-202ENST00000401394 CTIFO43310 598 aaKnown RBP24.78■■□□□ 1.56
CTCF-202ENST00000401394 EID1Q9Y6B2 187 aa24.78■■□□□ 1.56
CTCF-202ENST00000401394 H3BQV1 296 aa24.77■■□□□ 1.56
CTCF-202ENST00000401394 SCRN1Q12765 414 aa24.77■■□□□ 1.56
CTCF-202ENST00000401394 IFFO2Q5TF58 517 aa24.77■■□□□ 1.56
CTCF-202ENST00000401394 STOX1Q6ZVD7 989 aa24.77■■□□□ 1.56
CTCF-202ENST00000401394 DBNLQ9UJU6 430 aaKnown RBP24.77■■□□□ 1.56
CTCF-202ENST00000401394 PSMA5P28066 241 aa24.77■■□□□ 1.56
CTCF-202ENST00000401394 CYP21A2P08686 494 aa24.76■■□□□ 1.55
CTCF-202ENST00000401394 RESTQ13127 1097 aa24.76■■□□□ 1.55
CTCF-202ENST00000401394 OTUD7BQ6GQQ9 843 aa24.76■■□□□ 1.55
CTCF-202ENST00000401394 RAB11FIP4Q86YS3 637 aa24.76■■□□□ 1.55
CTCF-202ENST00000401394 PLEKHG1Q9ULL1 1385 aa24.76■■□□□ 1.55
CTCF-202ENST00000401394 PXDNQ92626 1479 aa24.76■■□□□ 1.55
CTCF-202ENST00000401394 RNMTO43148 476 aaKnown RBP24.76■■□□□ 1.55
CTCF-202ENST00000401394 SCAND2PQ9GZW5 306 aaPredicted RBP24.76■■□□□ 1.55
CTCF-202ENST00000401394 NPHP3Q7Z494 1330 aa24.76■■□□□ 1.55
CTCF-202ENST00000401394 TFCP2Q12800 502 aa24.75■■□□□ 1.55
CTCF-202ENST00000401394 RIC3Q7Z5B4 369 aa24.75■■□□□ 1.55
CTCF-202ENST00000401394 ATP5J2-PTCD1G3V325 749 aa24.75■■□□□ 1.55
CTCF-202ENST00000401394 PTCD1O75127 700 aaKnown RBP24.75■■□□□ 1.55
CTCF-202ENST00000401394 PTPN21Q16825 1174 aa24.75■■□□□ 1.55
CTCF-202ENST00000401394 IP6K1Q92551 441 aa24.75■■□□□ 1.55
CTCF-202ENST00000401394 GPHNQ9NQX3 736 aaPredicted RBP24.75■■□□□ 1.55
CTCF-202ENST00000401394 ELP1O95163 1332 aa24.74■■□□□ 1.55
CTCF-202ENST00000401394 FGD1P98174 961 aa24.74■■□□□ 1.55
CTCF-202ENST00000401394 APOBRQ0VD83 1088 aa24.74■■□□□ 1.55
CTCF-202ENST00000401394 MYD88Q99836 296 aa24.74■■□□□ 1.55
CTCF-202ENST00000401394 GTF3C6Q969F1 213 aa24.74■■□□□ 1.55
CTCF-202ENST00000401394 DBNDD2Q9BQY9 259 aa24.74■■□□□ 1.55
CTCF-202ENST00000401394 GJB4Q9NTQ9 266 aa24.74■■□□□ 1.55
CTCF-202ENST00000401394 TDRD7Q8NHU6 1098 aaKnown RBP24.73■■□□□ 1.55
CTCF-202ENST00000401394 NEK1Q96PY6 1258 aa24.73■■□□□ 1.55
CTCF-202ENST00000401394 PDCP20941 246 aa24.73■■□□□ 1.55
CTCF-202ENST00000401394 PDIA6Q15084 440 aa24.73■■□□□ 1.55
CTCF-202ENST00000401394 DIP2AQ14689 1571 aa24.73■■□□□ 1.55
CTCF-202ENST00000401394 IQCB1Q15051 598 aa24.72■■□□□ 1.55
CTCF-202ENST00000401394 CCAR1Q8IX12 1150 aaKnown RBP24.72■■□□□ 1.55
CTCF-202ENST00000401394 USP28Q96RU2 1077 aa24.72■■□□□ 1.55
CTCF-202ENST00000401394 ST7Q9NRC1 585 aa24.72■■□□□ 1.55
CTCF-202ENST00000401394 MED23Q9ULK4 1368 aa24.72■■□□□ 1.55
CTCF-202ENST00000401394 DDX19AQ9NUU7 478 aaKnown RBP24.72■■□□□ 1.55
CTCF-202ENST00000401394 AXIN2Q9Y2T1 843 aa24.72■■□□□ 1.55
CTCF-202ENST00000401394 ADD1P35611 737 aaKnown RBP24.72■■□□□ 1.55
CTCF-202ENST00000401394 RNF20Q5VTR2 975 aa24.72■■□□□ 1.55
CTCF-202ENST00000401394 ERC1Q8IUD2 1116 aa24.72■■□□□ 1.55
CTCF-202ENST00000401394 BABAM1Q9NWV8 329 aa24.72■■□□□ 1.55
CTCF-202ENST00000401394 A0A0U1RQG5 324 aaPredicted RBP24.71■■□□□ 1.55
CTCF-202ENST00000401394 CTDNEP1O95476 244 aa24.71■■□□□ 1.55
CTCF-202ENST00000401394 ISM2Q6H9L7 571 aa24.71■■□□□ 1.55
CTCF-202ENST00000401394 LINS1Q8NG48 757 aa24.71■■□□□ 1.55
CTCF-202ENST00000401394 ZNF215Q9UL58 517 aaPredicted RBP24.71■■□□□ 1.55
CTCF-202ENST00000401394 ESCO1Q5FWF5 840 aa24.71■■□□□ 1.55
CTCF-202ENST00000401394 AKAP4Q5JQC9 854 aa24.71■■□□□ 1.55
CTCF-202ENST00000401394 LRRC8AQ8IWT6 810 aa24.71■■□□□ 1.55
CTCF-202ENST00000401394 LRRN4CLQ8ND94 238 aa24.71■■□□□ 1.55
CTCF-202ENST00000401394 C1orf141Q5JVX7 400 aa24.7■■□□□ 1.55
CTCF-202ENST00000401394 COPS6Q7L5N1 327 aa24.7■■□□□ 1.55
CTCF-202ENST00000401394 XAGE3Q8WTP9 111 aa24.7■■□□□ 1.55
CTCF-202ENST00000401394 ALDH1L1O75891 902 aa24.7■■□□□ 1.54
CTCF-202ENST00000401394 RBM43Q6ZSC3 357 aaKnown RBP24.7■■□□□ 1.54
CTCF-202ENST00000401394 CCDC112Q8NEF3 446 aa24.7■■□□□ 1.54
CTCF-202ENST00000401394 FMNL2Q96PY5 1086 aa24.7■■□□□ 1.54
CTCF-202ENST00000401394 CTNNA3Q9UI47 895 aa24.7■■□□□ 1.54
CTCF-202ENST00000401394 SKILP12757 684 aa24.69■■□□□ 1.54
CTCF-202ENST00000401394 CEP135Q66GS9 1140 aa24.69■■□□□ 1.54
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms