RNA–Protein interactions for RNA: ENST00000400301.5

USP48-204, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 4,309 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-204ENST00000400301 SSH2Q76I76 1423 aa21.7■■□□□ 1.06
USP48-204ENST00000400301 GCKRQ14397 625 aa21.7■■□□□ 1.06
USP48-204ENST00000400301 DBNDD2Q9BQY9 259 aa21.7■■□□□ 1.06
USP48-204ENST00000400301 SLC52A2Q9HAB3 445 aa21.7■■□□□ 1.06
USP48-204ENST00000400301 BRMS1Q9HCU9 246 aa21.7■■□□□ 1.06
USP48-204ENST00000400301 ANO10Q9NW15 660 aa21.7■■□□□ 1.06
USP48-204ENST00000400301 SERPINC1P01008 464 aa21.69■■□□□ 1.06
USP48-204ENST00000400301 LRP2BPQ9P2M1 347 aa21.69■■□□□ 1.06
USP48-204ENST00000400301 ANKRD18BA2A2Z9 1011 aa21.69■■□□□ 1.06
USP48-204ENST00000400301 PROSER3Q2NL68 480 aa21.69■■□□□ 1.06
USP48-204ENST00000400301 TTC12Q9H892 705 aaPredicted RBP21.69■■□□□ 1.06
USP48-204ENST00000400301 FAM173BQ6P4H8 233 aa21.69■■□□□ 1.06
USP48-204ENST00000400301 GNL3LQ9NVN8 582 aaKnown RBP21.69■■□□□ 1.06
USP48-204ENST00000400301 CCDC112Q8NEF3 446 aa21.68■■□□□ 1.06
USP48-204ENST00000400301 EAF2Q96CJ1 260 aaPredicted RBP21.68■■□□□ 1.06
USP48-204ENST00000400301 ORC3Q9UBD5 711 aaPredicted RBP21.68■■□□□ 1.06
USP48-204ENST00000400301 MTMR7Q9Y216 660 aa21.68■■□□□ 1.06
USP48-204ENST00000400301 NDUFB9Q9Y6M9 179 aa21.68■■□□□ 1.06
USP48-204ENST00000400301 ZC3H13Q5T200 1668 aaKnown RBP21.68■■□□□ 1.06
USP48-204ENST00000400301 CTAGE5O15320 804 aa21.68■■□□□ 1.06
USP48-204ENST00000400301 TIMM10P62072 90 aa21.68■■□□□ 1.06
USP48-204ENST00000400301 PTH1RQ03431 593 aa21.68■■□□□ 1.06
USP48-204ENST00000400301 TSR1Q2NL82 804 aaKnown RBP21.68■■□□□ 1.06
USP48-204ENST00000400301 TNNI3KQ59H18 835 aa21.68■■□□□ 1.06
USP48-204ENST00000400301 CCDC129Q6ZRS4 1044 aa21.68■■□□□ 1.06
USP48-204ENST00000400301 CCAR1Q8IX12 1150 aaKnown RBP21.68■■□□□ 1.06
USP48-204ENST00000400301 ANKRD20A12PQ8NF67 263 aa21.68■■□□□ 1.06
USP48-204ENST00000400301 ABCF2Q9UG63 623 aa21.68■■□□□ 1.06
USP48-204ENST00000400301 FPGT-TNNI3KV9GXZ4 949 aa21.68■■□□□ 1.06
USP48-204ENST00000400301 HSP90AB3PQ58FF7 597 aa21.67■■□□□ 1.06
USP48-204ENST00000400301 NAPBQ9H115 298 aa21.67■■□□□ 1.06
USP48-204ENST00000400301 POLR3DP05423 398 aaPredicted RBP21.67■■□□□ 1.06
USP48-204ENST00000400301 FAM200AQ8TCP9 573 aa21.67■■□□□ 1.06
USP48-204ENST00000400301 KIF2CQ99661 725 aa21.67■■□□□ 1.06
USP48-204ENST00000400301 CLIP2Q9UDT6 1046 aa21.67■■□□□ 1.06
USP48-204ENST00000400301 MARCH6O60337 910 aa21.67■■□□□ 1.06
USP48-204ENST00000400301 GPT2Q8TD30 523 aa21.67■■□□□ 1.06
USP48-204ENST00000400301 EDC3Q96F86 508 aaKnown RBP21.66■■□□□ 1.06
USP48-204ENST00000400301 RASEFQ8IZ41 740 aa21.66■■□□□ 1.06
USP48-204ENST00000400301 UBAC1Q9BSL1 405 aa21.66■■□□□ 1.06
USP48-204ENST00000400301 RPS6KB1P23443 525 aa21.66■■□□□ 1.06
USP48-204ENST00000400301 CHST3Q7LGC8 479 aa21.66■■□□□ 1.06
USP48-204ENST00000400301 MNS1Q8NEH6 495 aa21.66■■□□□ 1.06
USP48-204ENST00000400301 TEX13AQ9BXU3 409 aaPredicted RBP21.66■■□□□ 1.06
USP48-204ENST00000400301 IGHMBP2P38935 993 aaKnown RBP21.66■■□□□ 1.06
USP48-204ENST00000400301 RAI14Q9P0K7 980 aa21.66■■□□□ 1.06
USP48-204ENST00000400301 ANO6Q4KMQ2 910 aa21.65■■□□□ 1.06
USP48-204ENST00000400301 DDX17Q92841 729 aaKnown RBP21.65■■□□□ 1.06
USP48-204ENST00000400301 G3V3G9 751 aa21.65■■□□□ 1.06
USP48-204ENST00000400301 DCAF8Q5TAQ9 597 aa21.65■■□□□ 1.06
USP48-204ENST00000400301 KLF18A0A0U1RQI7 1052 aa21.64■■□□□ 1.06
USP48-204ENST00000400301 CCDC82Q8N4S0 544 aa21.64■■□□□ 1.06
USP48-204ENST00000400301 KDRP35968 1356 aa21.64■■□□□ 1.06
USP48-204ENST00000400301 NEURL1BA8MQ27 555 aa21.64■■□□□ 1.05
USP48-204ENST00000400301 TMX4Q9H1E5 349 aaPredicted RBP21.64■■□□□ 1.05
USP48-204ENST00000400301 MYO3AQ8NEV4 1616 aa21.64■■□□□ 1.05
USP48-204ENST00000400301 OFD1O75665 1012 aa21.64■■□□□ 1.05
USP48-204ENST00000400301 APOBRQ0VD83 1088 aa21.64■■□□□ 1.05
USP48-204ENST00000400301 NCOA7Q8NI08 942 aa21.64■■□□□ 1.05
USP48-204ENST00000400301 MAP3K12Q12852 859 aa21.64■■□□□ 1.05
USP48-204ENST00000400301 ATP2B3Q16720 1220 aa21.64■■□□□ 1.05
USP48-204ENST00000400301 PLBD2Q8NHP8 589 aa21.64■■□□□ 1.05
USP48-204ENST00000400301 TM6SF1Q9BZW5 370 aa21.64■■□□□ 1.05
USP48-204ENST00000400301 DHX32Q7L7V1 743 aaKnown RBP21.63■■□□□ 1.05
USP48-204ENST00000400301 ARHGEF25Q86VW2 580 aa21.63■■□□□ 1.05
USP48-204ENST00000400301 KAT6BQ8WYB5 2073 aa21.63■■□□□ 1.05
USP48-204ENST00000400301 TYRO3Q06418 890 aa21.63■■□□□ 1.05
USP48-204ENST00000400301 MROH1Q8NDA8 1641 aa21.63■■□□□ 1.05
USP48-204ENST00000400301 PRAMEF22A3QJZ6 481 aa21.63■■□□□ 1.05
USP48-204ENST00000400301 ZFYP08048 801 aaPredicted RBP21.63■■□□□ 1.05
USP48-204ENST00000400301 LSG1Q9H089 658 aaKnown RBP21.63■■□□□ 1.05
USP48-204ENST00000400301 NOL7Q9UMY1 257 aaKnown RBP21.63■■□□□ 1.05
USP48-204ENST00000400301 NOLC1Q14978 699 aaKnown RBP eCLIP21.62■■□□□ 1.05
USP48-204ENST00000400301 STX1AQ16623 288 aa21.62■■□□□ 1.05
USP48-204ENST00000400301 MICU3Q86XE3 530 aa21.62■■□□□ 1.05
USP48-204ENST00000400301 RGS12O14924 1447 aa21.62■■□□□ 1.05
USP48-204ENST00000400301 CPS1P31327 1500 aa21.62■■□□□ 1.05
USP48-204ENST00000400301 BIN1O00499 593 aa21.61■■□□□ 1.05
USP48-204ENST00000400301 CUL4AQ13619 759 aa21.61■■□□□ 1.05
USP48-204ENST00000400301 CCDC144CPQ8IYA2 1237 aa21.61■■□□□ 1.05
USP48-204ENST00000400301 MINDY4BA8MYZ0 360 aa21.61■■□□□ 1.05
USP48-204ENST00000400301 RNF113AO15541 343 aaKnown RBP21.61■■□□□ 1.05
USP48-204ENST00000400301 ME3Q16798 604 aa21.61■■□□□ 1.05
USP48-204ENST00000400301 FRMPD1Q5SYB0 1578 aa21.61■■□□□ 1.05
USP48-204ENST00000400301 A0A0D9SFI3 127 aa21.61■■□□□ 1.05
USP48-204ENST00000400301 DNAJC25Q9H1X3 360 aa21.61■■□□□ 1.05
USP48-204ENST00000400301 PPLO60437 1756 aa21.61■■□□□ 1.05
USP48-204ENST00000400301 SMTNL1A8MU46 457 aa21.61■■□□□ 1.05
USP48-204ENST00000400301 IFIT3O14879 490 aaKnown RBP21.61■■□□□ 1.05
USP48-204ENST00000400301 NUTM2BA6NNL0 878 aaPredicted RBP21.6■■□□□ 1.05
USP48-204ENST00000400301 NUTM2EB1AL46 878 aaPredicted RBP21.6■■□□□ 1.05
USP48-204ENST00000400301 A1BGP04217 495 aa21.6■■□□□ 1.05
USP48-204ENST00000400301 IL2RBP14784 551 aa21.6■■□□□ 1.05
USP48-204ENST00000400301 NUTM2AQ8IVF1 878 aaPredicted RBP21.6■■□□□ 1.05
USP48-204ENST00000400301 WASF1Q92558 559 aa21.6■■□□□ 1.05
USP48-204ENST00000400301 C16orf45Q96MC5 204 aaPredicted RBP21.6■■□□□ 1.05
USP48-204ENST00000400301 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP21.6■■□□□ 1.05
USP48-204ENST00000400301 DLC1Q96QB1 1528 aa21.6■■□□□ 1.05
USP48-204ENST00000400301 PTPDC1A2A3K4 754 aa21.6■■□□□ 1.05
USP48-204ENST00000400301 GOLGA8AA7E2F4 631 aa21.6■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 53.3 ms