RNA–Protein interactions for RNA: ENST00000398729.1

VCX3A-202, Transcript of variable charge X-linked 3A, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene VCX3A, Length 808 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCX3A-202ENST00000398729 PSMD1Q99460 953 aa17.31■□□□□ 0.36
VCX3A-202ENST00000398729 ISCA1Q9BUE6 129 aa17.31■□□□□ 0.36
VCX3A-202ENST00000398729 TMX4Q9H1E5 349 aaPredicted RBP17.31■□□□□ 0.36
VCX3A-202ENST00000398729 ATP5J2-PTCD1G3V325 749 aa17.3■□□□□ 0.36
VCX3A-202ENST00000398729 HCLS1P14317 486 aaPredicted RBP17.3■□□□□ 0.36
VCX3A-202ENST00000398729 SLC51AQ86UW1 340 aa17.3■□□□□ 0.36
VCX3A-202ENST00000398729 TSR2Q969E8 191 aaKnown RBP17.3■□□□□ 0.36
VCX3A-202ENST00000398729 ABHD8Q96I13 439 aa17.3■□□□□ 0.36
VCX3A-202ENST00000398729 LAMB2P55268 1798 aa17.3■□□□□ 0.36
VCX3A-202ENST00000398729 IL16Q14005 1332 aa17.29■□□□□ 0.36
VCX3A-202ENST00000398729 EPS15P42566 896 aa17.29■□□□□ 0.36
VCX3A-202ENST00000398729 TSPYL6Q8N831 410 aa17.29■□□□□ 0.36
VCX3A-202ENST00000398729 PHAXQ9H814 394 aaKnown RBP17.29■□□□□ 0.36
VCX3A-202ENST00000398729 COL4A5P29400 1685 aa17.29■□□□□ 0.36
VCX3A-202ENST00000398729 ABCC4O15439 1325 aa17.28■□□□□ 0.36
VCX3A-202ENST00000398729 TCERG1O14776 1098 aaKnown RBP17.28■□□□□ 0.36
VCX3A-202ENST00000398729 MAP2K1Q02750 393 aaPredicted RBP17.28■□□□□ 0.36
VCX3A-202ENST00000398729 TRIM28Q13263 835 aaKnown RBP17.28■□□□□ 0.36
VCX3A-202ENST00000398729 CST9Q5W186 159 aa17.28■□□□□ 0.36
VCX3A-202ENST00000398729 DDX46Q7L014 1031 aaKnown RBP17.28■□□□□ 0.36
VCX3A-202ENST00000398729 JDP2Q8WYK2 163 aa17.28■□□□□ 0.36
VCX3A-202ENST00000398729 ZNF428Q96B54 188 aa17.28■□□□□ 0.36
VCX3A-202ENST00000398729 BBOX1O75936 387 aa17.27■□□□□ 0.36
VCX3A-202ENST00000398729 DDX58O95786 925 aaKnown RBP17.27■□□□□ 0.36
VCX3A-202ENST00000398729 SCNN1DP51172 638 aa17.27■□□□□ 0.36
VCX3A-202ENST00000398729 FAM89AQ96GI7 184 aa17.27■□□□□ 0.36
VCX3A-202ENST00000398729 ABT1Q9ULW3 272 aaKnown RBP17.27■□□□□ 0.36
VCX3A-202ENST00000398729 ATP6V0A2Q9Y487 856 aa17.27■□□□□ 0.36
VCX3A-202ENST00000398729 GJA3Q9Y6H8 435 aa17.27■□□□□ 0.36
VCX3A-202ENST00000398729 STK31Q9BXU1 1019 aa17.26■□□□□ 0.35
VCX3A-202ENST00000398729 SALL2Q9Y467 1007 aaPredicted RBP17.26■□□□□ 0.35
VCX3A-202ENST00000398729 LTBP1Q14766 1721 aa17.26■□□□□ 0.35
VCX3A-202ENST00000398729 DDX60Q8IY21 1712 aaKnown RBP17.26■□□□□ 0.35
VCX3A-202ENST00000398729 EIF6P56537 245 aaKnown RBP17.25■□□□□ 0.35
VCX3A-202ENST00000398729 TWISTNBQ3B726 338 aaPredicted RBP17.25■□□□□ 0.35
VCX3A-202ENST00000398729 WDR63Q8IWG1 891 aa17.25■□□□□ 0.35
VCX3A-202ENST00000398729 MYD88Q99836 296 aa17.25■□□□□ 0.35
VCX3A-202ENST00000398729 TRAF5O00463 557 aa17.24■□□□□ 0.35
VCX3A-202ENST00000398729 GRAPQ13588 217 aa17.24■□□□□ 0.35
VCX3A-202ENST00000398729 RTL5Q5HYW3 569 aaPredicted RBP17.24■□□□□ 0.35
VCX3A-202ENST00000398729 CYP4F22Q6NT55 531 aa17.24■□□□□ 0.35
VCX3A-202ENST00000398729 SP8Q8IXZ3 490 aa17.24■□□□□ 0.35
VCX3A-202ENST00000398729 FAM9BQ8IZU0 186 aa17.24■□□□□ 0.35
VCX3A-202ENST00000398729 LARGE2Q8N3Y3 721 aa17.24■□□□□ 0.35
VCX3A-202ENST00000398729 GRAPLQ8TC17 118 aaPredicted RBP17.24■□□□□ 0.35
VCX3A-202ENST00000398729 CAPNS2Q96L46 248 aa17.24■□□□□ 0.35
VCX3A-202ENST00000398729 IRS4O14654 1257 aaPredicted RBP17.23■□□□□ 0.35
VCX3A-202ENST00000398729 HSP90B1P14625 803 aaKnown RBP17.23■□□□□ 0.35
VCX3A-202ENST00000398729 SF3B3Q15393 1217 aaKnown RBP17.23■□□□□ 0.35
VCX3A-202ENST00000398729 FAM161AQ3B820 660 aa17.23■□□□□ 0.35
VCX3A-202ENST00000398729 TMC4Q7Z404 712 aa17.23■□□□□ 0.35
VCX3A-202ENST00000398729 ZBTB38Q8NAP3 1195 aaPredicted RBP17.23■□□□□ 0.35
VCX3A-202ENST00000398729 CCDC191Q8NCU4 936 aa17.23■□□□□ 0.35
VCX3A-202ENST00000398729 SUPT20HQ8NEM7 779 aa17.23■□□□□ 0.35
VCX3A-202ENST00000398729 GPR101Q96P66 508 aaPredicted RBP17.23■□□□□ 0.35
VCX3A-202ENST00000398729 METTL22Q9BUU2 404 aaPredicted RBP17.23■□□□□ 0.35
VCX3A-202ENST00000398729 FANCIQ9NVI1 1328 aa17.22■□□□□ 0.35
VCX3A-202ENST00000398729 SLC34A2O95436 690 aa17.22■□□□□ 0.35
VCX3A-202ENST00000398729 DPP8Q6V1X1 898 aaPredicted RBP17.22■□□□□ 0.35
VCX3A-202ENST00000398729 USP50Q70EL3 339 aaPredicted RBP17.22■□□□□ 0.35
VCX3A-202ENST00000398729 VPS33BQ9H267 617 aa17.22■□□□□ 0.35
VCX3A-202ENST00000398729 MAP3K2Q9Y2U5 619 aa17.22■□□□□ 0.35
VCX3A-202ENST00000398729 TAF1P21675 1872 aa17.21■□□□□ 0.35
VCX3A-202ENST00000398729 PPIP5K2O43314 1243 aa17.21■□□□□ 0.35
VCX3A-202ENST00000398729 LMOD1P29536 600 aaPredicted RBP17.21■□□□□ 0.35
VCX3A-202ENST00000398729 KSR2Q6VAB6 950 aa17.21■□□□□ 0.35
VCX3A-202ENST00000398729 NIM1KQ8IY84 436 aa17.21■□□□□ 0.35
VCX3A-202ENST00000398729 MPNDQ8N594 471 aa17.21■□□□□ 0.35
VCX3A-202ENST00000398729 RTFDC1Q9BY42 306 aaPredicted RBP17.21■□□□□ 0.35
VCX3A-202ENST00000398729 CWC25Q9NXE8 425 aaPredicted RBP17.21■□□□□ 0.35
VCX3A-202ENST00000398729 TLL2Q9Y6L7 1015 aa17.21■□□□□ 0.35
VCX3A-202ENST00000398729 PI4KAP2A4QPH2 592 aa17.2■□□□□ 0.34
VCX3A-202ENST00000398729 AOC2O75106 756 aa17.2■□□□□ 0.34
VCX3A-202ENST00000398729 PCCAP05165 728 aaPredicted RBP17.2■□□□□ 0.34
VCX3A-202ENST00000398729 RGS19P49795 217 aa17.2■□□□□ 0.34
VCX3A-202ENST00000398729 PI4KAP1Q8N8J0 262 aa17.2■□□□□ 0.34
VCX3A-202ENST00000398729 SLC4A2P04920 1241 aa17.19■□□□□ 0.34
VCX3A-202ENST00000398729 ECE1P42892 770 aa17.19■□□□□ 0.34
VCX3A-202ENST00000398729 NEXNQ0ZGT2 675 aa17.19■□□□□ 0.34
VCX3A-202ENST00000398729 GRM1Q13255 1194 aa17.19■□□□□ 0.34
VCX3A-202ENST00000398729 AOC3Q16853 763 aa17.19■□□□□ 0.34
VCX3A-202ENST00000398729 TSKSQ9UJT2 592 aa17.19■□□□□ 0.34
VCX3A-202ENST00000398729 CCDC85CA6NKD9 419 aa17.18■□□□□ 0.34
VCX3A-202ENST00000398729 CXCL9Q07325 125 aa17.18■□□□□ 0.34
VCX3A-202ENST00000398729 PAXIP1Q6ZW49 1069 aaPredicted RBP17.18■□□□□ 0.34
VCX3A-202ENST00000398729 CELF1Q92879 486 aaKnown RBP17.18■□□□□ 0.34
VCX3A-202ENST00000398729 GPRC5DQ9NZD1 345 aa17.18■□□□□ 0.34
VCX3A-202ENST00000398729 LRRC37AA6NMS7 1700 aa17.18■□□□□ 0.34
VCX3A-202ENST00000398729 PDE8AO60658 829 aa17.17■□□□□ 0.34
VCX3A-202ENST00000398729 MAP2K2P36507 400 aa17.17■□□□□ 0.34
VCX3A-202ENST00000398729 EXOSC9Q06265 439 aaKnown RBP17.17■□□□□ 0.34
VCX3A-202ENST00000398729 G2E3Q7L622 706 aa17.17■□□□□ 0.34
VCX3A-202ENST00000398729 SAPCD2Q86UD0 394 aa17.17■□□□□ 0.34
VCX3A-202ENST00000398729 MYH16Q9H6N6 1097 aa17.17■□□□□ 0.34
VCX3A-202ENST00000398729 PGAP2Q9UHJ9 254 aa17.17■□□□□ 0.34
VCX3A-202ENST00000398729 CACNA1FO60840 1977 aa17.17■□□□□ 0.34
VCX3A-202ENST00000398729 VAMP4O75379 141 aa17.16■□□□□ 0.34
VCX3A-202ENST00000398729 IGKV5-2P06315 115 aa17.16■□□□□ 0.34
VCX3A-202ENST00000398729 HIRAP54198 1017 aaPredicted RBP17.16■□□□□ 0.34
VCX3A-202ENST00000398729 RPS8P62241 208 aaKnown RBP17.16■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms