RNA–Protein interactions for RNA: ENST00000397200.8

CAPN3-207, Transcript of calpain 3, humanhuman

TSL 1 (best) BASIC

Gene CAPN3, Length 1,643 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN3-207ENST00000397200 SIRT2Q8IXJ6 389 aa18.48■□□□□ 0.55
CAPN3-207ENST00000397200 ABCC12Q96J65 1359 aa18.47■□□□□ 0.55
CAPN3-207ENST00000397200 PDE8AO60658 829 aa18.47■□□□□ 0.55
CAPN3-207ENST00000397200 EPHA10Q5JZY3 1008 aa18.47■□□□□ 0.55
CAPN3-207ENST00000397200 CEP85Q6P2H3 762 aa18.47■□□□□ 0.55
CAPN3-207ENST00000397200 RPAP2Q8IXW5 612 aaPredicted RBP18.47■□□□□ 0.55
CAPN3-207ENST00000397200 ZBTB47Q9UFB7 747 aaPredicted RBP18.47■□□□□ 0.55
CAPN3-207ENST00000397200 FOXO4P98177 505 aa18.46■□□□□ 0.55
CAPN3-207ENST00000397200 SLC10A5Q5PT55 438 aa18.46■□□□□ 0.55
CAPN3-207ENST00000397200 CCDC24Q8N4L8 307 aa18.46■□□□□ 0.55
CAPN3-207ENST00000397200 ANKRD44Q8N8A2 993 aa18.46■□□□□ 0.55
CAPN3-207ENST00000397200 ATF5Q9Y2D1 282 aaPredicted RBP18.46■□□□□ 0.55
CAPN3-207ENST00000397200 CTSWP56202 376 aa18.45■□□□□ 0.54
CAPN3-207ENST00000397200 POLD1P28340 1107 aa18.45■□□□□ 0.54
CAPN3-207ENST00000397200 RABL6Q3YEC7 729 aaPredicted RBP18.45■□□□□ 0.54
CAPN3-207ENST00000397200 LMBR1LQ6UX01 489 aa18.45■□□□□ 0.54
CAPN3-207ENST00000397200 CHMP3Q9Y3E7 222 aa18.45■□□□□ 0.54
CAPN3-207ENST00000397200 TNRC6CQ9HCJ0 1690 aaKnown RBP18.44■□□□□ 0.54
CAPN3-207ENST00000397200 RIC1Q4ADV7 1423 aa18.44■□□□□ 0.54
CAPN3-207ENST00000397200 ATP8B2P98198 1209 aa18.44■□□□□ 0.54
CAPN3-207ENST00000397200 MTX1Q13505 466 aa18.44■□□□□ 0.54
CAPN3-207ENST00000397200 CHD1LQ86WJ1 897 aa18.44■□□□□ 0.54
CAPN3-207ENST00000397200 NLRP3Q96P20 1036 aa18.44■□□□□ 0.54
CAPN3-207ENST00000397200 SRGAP3O43295 1099 aa18.43■□□□□ 0.54
CAPN3-207ENST00000397200 HMMRO75330 724 aa18.43■□□□□ 0.54
CAPN3-207ENST00000397200 ANKRD31Q8N7Z5 1873 aa18.42■□□□□ 0.54
CAPN3-207ENST00000397200 PNMA6EA0A0J9YXQ4 647 aa18.42■□□□□ 0.54
CAPN3-207ENST00000397200 CSF1RP07333 972 aa18.42■□□□□ 0.54
CAPN3-207ENST00000397200 TTLL11Q8NHH1 800 aa18.42■□□□□ 0.54
CAPN3-207ENST00000397200 CCDC152Q4G0S7 254 aa18.41■□□□□ 0.54
CAPN3-207ENST00000397200 CCDC85AQ96PX6 553 aaPredicted RBP18.41■□□□□ 0.54
CAPN3-207ENST00000397200 C3orf67Q6ZVT6 689 aa18.41■□□□□ 0.54
CAPN3-207ENST00000397200 SSH3Q8TE77 659 aa18.41■□□□□ 0.54
CAPN3-207ENST00000397200 BRIP1Q9BX63 1249 aa18.41■□□□□ 0.54
CAPN3-207ENST00000397200 SEC24BO95487 1268 aa18.4■□□□□ 0.54
CAPN3-207ENST00000397200 SF3B3Q15393 1217 aaKnown RBP18.4■□□□□ 0.54
CAPN3-207ENST00000397200 PDE6BP35913 854 aa18.39■□□□□ 0.53
CAPN3-207ENST00000397200 IFIT5Q13325 482 aaKnown RBP18.39■□□□□ 0.53
CAPN3-207ENST00000397200 POLA2Q14181 598 aa18.39■□□□□ 0.53
CAPN3-207ENST00000397200 CCDC57Q2TAC2 916 aa18.39■□□□□ 0.53
CAPN3-207ENST00000397200 GREM2Q9H772 168 aa18.39■□□□□ 0.53
CAPN3-207ENST00000397200 DCTPP1Q9H773 170 aa18.39■□□□□ 0.53
CAPN3-207ENST00000397200 SGIP1Q9BQI5 828 aa18.38■□□□□ 0.53
CAPN3-207ENST00000397200 LNPKQ9C0E8 428 aa18.38■□□□□ 0.53
CAPN3-207ENST00000397200 SPON1Q9HCB6 807 aa18.38■□□□□ 0.53
CAPN3-207ENST00000397200 C10orf71Q711Q0 1435 aa18.38■□□□□ 0.53
CAPN3-207ENST00000397200 RTL9Q8NET4 1388 aa18.38■□□□□ 0.53
CAPN3-207ENST00000397200 ANKRD18BA2A2Z9 1011 aa18.38■□□□□ 0.53
CAPN3-207ENST00000397200 ITGA6P23229 1130 aa18.38■□□□□ 0.53
CAPN3-207ENST00000397200 RPGRQ92834 1020 aaKnown RBP18.37■□□□□ 0.53
CAPN3-207ENST00000397200 KIF13BQ9NQT8 1826 aa18.36■□□□□ 0.53
CAPN3-207ENST00000397200 KLRG2A4D1S0 409 aaPredicted RBP18.36■□□□□ 0.53
CAPN3-207ENST00000397200 PTGER2P43116 358 aa18.36■□□□□ 0.53
CAPN3-207ENST00000397200 RFX5P48382 616 aaPredicted RBP18.36■□□□□ 0.53
CAPN3-207ENST00000397200 CRY2Q49AN0 593 aa18.36■□□□□ 0.53
CAPN3-207ENST00000397200 BMP2KLQ5H9B9 411 aa18.36■□□□□ 0.53
CAPN3-207ENST00000397200 TAF7LQ5H9L4 462 aa18.36■□□□□ 0.53
CAPN3-207ENST00000397200 DDX46Q7L014 1031 aaKnown RBP18.36■□□□□ 0.53
CAPN3-207ENST00000397200 COL11A2P13942 1736 aaPredicted RBP18.35■□□□□ 0.53
CAPN3-207ENST00000397200 TBC1D32Q96NH3 1257 aa18.35■□□□□ 0.53
CAPN3-207ENST00000397200 SEC31BQ9NQW1 1179 aa18.35■□□□□ 0.53
CAPN3-207ENST00000397200 SPEF2Q9C093 1822 aa18.35■□□□□ 0.53
CAPN3-207ENST00000397200 PTPN12Q05209 780 aaKnown RBP18.34■□□□□ 0.53
CAPN3-207ENST00000397200 ANKRD45Q5TZF3 282 aa18.34■□□□□ 0.53
CAPN3-207ENST00000397200 KLHDC4Q8TBB5 520 aa18.34■□□□□ 0.53
CAPN3-207ENST00000397200 RBM17Q96I25 401 aaKnown RBP18.34■□□□□ 0.53
CAPN3-207ENST00000397200 CDC5LQ99459 802 aaKnown RBP18.34■□□□□ 0.53
CAPN3-207ENST00000397200 COPRSQ9NQ92 184 aa18.34■□□□□ 0.53
CAPN3-207ENST00000397200 PA2G4Q9UQ80 394 aaKnown RBP18.34■□□□□ 0.53
CAPN3-207ENST00000397200 TAF1P21675 1872 aa18.34■□□□□ 0.53
CAPN3-207ENST00000397200 SURF6O75683 361 aaKnown RBP18.34■□□□□ 0.53
CAPN3-207ENST00000397200 ZNF594Q96JF6 807 aaPredicted RBP18.34■□□□□ 0.53
CAPN3-207ENST00000397200 IGHMBP2P38935 993 aaKnown RBP18.33■□□□□ 0.52
CAPN3-207ENST00000397200 C2CD5Q86YS7 1000 aa18.33■□□□□ 0.52
CAPN3-207ENST00000397200 SIL1Q9H173 461 aa18.33■□□□□ 0.52
CAPN3-207ENST00000397200 EXOC6BQ9Y2D4 811 aa18.33■□□□□ 0.52
CAPN3-207ENST00000397200 H0YIN7 160 aa18.32■□□□□ 0.52
CAPN3-207ENST00000397200 SRGNP10124 158 aa18.32■□□□□ 0.52
CAPN3-207ENST00000397200 NPR1P16066 1061 aa18.32■□□□□ 0.52
CAPN3-207ENST00000397200 HOXA10P31260 410 aaPredicted RBP18.32■□□□□ 0.52
CAPN3-207ENST00000397200 G3BP1Q13283 466 aaKnown RBP eCLIP18.32■□□□□ 0.52
CAPN3-207ENST00000397200 OS9Q13438 667 aaPredicted RBP18.32■□□□□ 0.52
CAPN3-207ENST00000397200 HSP90AB4PQ58FF6 505 aa18.32■□□□□ 0.52
CAPN3-207ENST00000397200 ANKRD18AQ8IVF6 992 aa18.32■□□□□ 0.52
CAPN3-207ENST00000397200 UPF2Q9HAU5 1272 aaKnown RBP18.32■□□□□ 0.52
CAPN3-207ENST00000397200 LRP5O75197 1615 aa18.31■□□□□ 0.52
CAPN3-207ENST00000397200 MASTLQ96GX5 879 aa18.31■□□□□ 0.52
CAPN3-207ENST00000397200 MPHOSPH8Q99549 860 aa18.31■□□□□ 0.52
CAPN3-207ENST00000397200 PPP1R1BQ9UD71 204 aaPredicted RBP18.31■□□□□ 0.52
CAPN3-207ENST00000397200 DLEC1Q9Y238 1755 aa18.31■□□□□ 0.52
CAPN3-207ENST00000397200 GRAPQ13588 217 aa18.31■□□□□ 0.52
CAPN3-207ENST00000397200 LDHAL6AQ6ZMR3 332 aa18.31■□□□□ 0.52
CAPN3-207ENST00000397200 KLHL34Q8N239 644 aa18.31■□□□□ 0.52
CAPN3-207ENST00000397200 GRAPLQ8TC17 118 aaPredicted RBP18.31■□□□□ 0.52
CAPN3-207ENST00000397200 CELF1Q92879 486 aaKnown RBP18.31■□□□□ 0.52
CAPN3-207ENST00000397200 CRAMP1Q96RY5 1269 aa18.31■□□□□ 0.52
CAPN3-207ENST00000397200 FBXO3Q9UK99 471 aa18.31■□□□□ 0.52
CAPN3-207ENST00000397200 COL4A1P02462 1669 aa18.3■□□□□ 0.52
CAPN3-207ENST00000397200 EYA2O00167 538 aa18.3■□□□□ 0.52
CAPN3-207ENST00000397200 CHRNA5P30532 468 aa18.3■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms