RNA–Protein interactions for RNA: ENST00000395898.3

VPS13C-204, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13C, Length 11,012 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-204ENST00000395898 OGFOD1Q8N543 542 aa6.25□□□□□ -1.41
VPS13C-204ENST00000395898 SETDB2Q96T68 719 aa6.25□□□□□ -1.41
VPS13C-204ENST00000395898 SOS1Q07889 1333 aaPredicted RBP6.25□□□□□ -1.41
VPS13C-204ENST00000395898 GPTP24298 496 aa6.25□□□□□ -1.41
VPS13C-204ENST00000395898 MCMDC2Q4G0Z9 681 aa6.25□□□□□ -1.41
VPS13C-204ENST00000395898 TCERG1LQ5VWI1 586 aa6.25□□□□□ -1.41
VPS13C-204ENST00000395898 PBRM1Q86U86 1689 aa6.25□□□□□ -1.41
VPS13C-204ENST00000395898 TMCO5BA8MYB1 307 aa6.25□□□□□ -1.41
VPS13C-204ENST00000395898 KLHL40Q2TBA0 621 aa6.25□□□□□ -1.41
VPS13C-204ENST00000395898 ERMNQ8TAM6 284 aa6.25□□□□□ -1.41
VPS13C-204ENST00000395898 MBIPQ9NS73 344 aa6.25□□□□□ -1.41
VPS13C-204ENST00000395898 KIF1BO60333 1816 aa6.25□□□□□ -1.41
VPS13C-204ENST00000395898 CTNNBL1Q8WYA6 563 aaPredicted RBP6.25□□□□□ -1.41
VPS13C-204ENST00000395898 NPHP3Q7Z494 1330 aa6.25□□□□□ -1.41
VPS13C-204ENST00000395898 ACTN2P35609 894 aa6.25□□□□□ -1.41
VPS13C-204ENST00000395898 WDR78Q5VTH9 848 aa6.25□□□□□ -1.41
VPS13C-204ENST00000395898 CKAP2LQ8IYA6 745 aa6.25□□□□□ -1.41
VPS13C-204ENST00000395898 MPNDQ8N594 471 aa6.25□□□□□ -1.41
VPS13C-204ENST00000395898 ANKRD24Q8TF21 1146 aa6.25□□□□□ -1.41
VPS13C-204ENST00000395898 TBC1D32Q96NH3 1257 aa6.25□□□□□ -1.41
VPS13C-204ENST00000395898 GTPBP4Q9BZE4 634 aaKnown RBP6.25□□□□□ -1.41
VPS13C-204ENST00000395898 ADCY5O95622 1261 aa6.25□□□□□ -1.41
VPS13C-204ENST00000395898 PRPHP41219 470 aa6.25□□□□□ -1.41
VPS13C-204ENST00000395898 FMNL3Q8IVF7 1028 aa6.25□□□□□ -1.41
VPS13C-204ENST00000395898 JADE2Q9NQC1 790 aa6.25□□□□□ -1.41
VPS13C-204ENST00000395898 GPATCH8Q9UKJ3 1502 aaKnown RBP6.25□□□□□ -1.41
VPS13C-204ENST00000395898 FSD2A1L4K1 749 aa6.24□□□□□ -1.41
VPS13C-204ENST00000395898 ZBTB43O43298 467 aa6.24□□□□□ -1.41
VPS13C-204ENST00000395898 STAT6P42226 847 aa6.24□□□□□ -1.41
VPS13C-204ENST00000395898 SYKP43405 635 aa6.24□□□□□ -1.41
VPS13C-204ENST00000395898 HLTFQ14527 1009 aaKnown RBP eCLIP6.24□□□□□ -1.411e-6■□□□□ 11.3
VPS13C-204ENST00000395898 CCDC40Q4G0X9 1142 aa6.24□□□□□ -1.41
VPS13C-204ENST00000395898 ZCRB1Q8TBF4 217 aaKnown RBP6.24□□□□□ -1.41
VPS13C-204ENST00000395898 ZBTB3Q9H5J0 574 aa6.24□□□□□ -1.41
VPS13C-204ENST00000395898 NOP2P46087 812 aaKnown RBP6.24□□□□□ -1.41
VPS13C-204ENST00000395898 C20orf194Q5TEA3 1177 aa6.24□□□□□ -1.41
VPS13C-204ENST00000395898 SLC26A6Q9BXS9 759 aa6.24□□□□□ -1.41
VPS13C-204ENST00000395898 ORC3Q9UBD5 711 aaPredicted RBP6.24□□□□□ -1.41
VPS13C-204ENST00000395898 SNW1Q13573 536 aaKnown RBP6.24□□□□□ -1.41
VPS13C-204ENST00000395898 NLRP3Q96P20 1036 aa6.24□□□□□ -1.41
VPS13C-204ENST00000395898 SREK1Q8WXA9 508 aaKnown RBP6.24□□□□□ -1.41
VPS13C-204ENST00000395898 SELENOOQ9BVL4 669 aa6.24□□□□□ -1.41
VPS13C-204ENST00000395898 URB2Q14146 1524 aaKnown RBP6.24□□□□□ -1.41
VPS13C-204ENST00000395898 A2MP01023 1474 aa6.24□□□□□ -1.41
VPS13C-204ENST00000395898 UBASH3AP57075 661 aa6.24□□□□□ -1.41
VPS13C-204ENST00000395898 CKAP4Q07065 602 aaKnown RBP6.24□□□□□ -1.41
VPS13C-204ENST00000395898 BCCIPQ9P287 314 aaKnown RBP eCLIP6.24□□□□□ -1.41
VPS13C-204ENST00000395898 UHRF1BP1LA0JNW5 1464 aa6.24□□□□□ -1.41
VPS13C-204ENST00000395898 PPIP5K1Q6PFW1 1433 aa6.24□□□□□ -1.41
VPS13C-204ENST00000395898 ZSCAN22P10073 491 aaPredicted RBP6.24□□□□□ -1.41
VPS13C-204ENST00000395898 AKAP4Q5JQC9 854 aa6.24□□□□□ -1.41
VPS13C-204ENST00000395898 TNRQ92752 1358 aa6.24□□□□□ -1.41
VPS13C-204ENST00000395898 CCDC175P0C221 793 aa6.24□□□□□ -1.41
VPS13C-204ENST00000395898 CALML3P27482 149 aa6.24□□□□□ -1.41
VPS13C-204ENST00000395898 KIAA0753Q2KHM9 967 aa6.24□□□□□ -1.41
VPS13C-204ENST00000395898 KDM5AP29375 1690 aaKnown RBP6.24□□□□□ -1.41
VPS13C-204ENST00000395898 TMC6Q7Z403 805 aa6.24□□□□□ -1.41
VPS13C-204ENST00000395898 CCDC144CPQ8IYA2 1237 aa6.24□□□□□ -1.41
VPS13C-204ENST00000395898 C16orf45Q96MC5 204 aaPredicted RBP6.24□□□□□ -1.41
VPS13C-204ENST00000395898 CCDC171Q6TFL3 1326 aa6.24□□□□□ -1.41
VPS13C-204ENST00000395898 MACROD2A1Z1Q3 448 aa6.24□□□□□ -1.41
VPS13C-204ENST00000395898 CALM1P0DP23 149 aa6.24□□□□□ -1.41
VPS13C-204ENST00000395898 CALM2P0DP24 149 aa6.24□□□□□ -1.41
VPS13C-204ENST00000395898 CALM3P0DP25 149 aa6.24□□□□□ -1.41
VPS13C-204ENST00000395898 CYLC1P35663 651 aaPredicted RBP6.24□□□□□ -1.41
VPS13C-204ENST00000395898 SPECC1LQ69YQ0 1117 aa6.24□□□□□ -1.41
VPS13C-204ENST00000395898 ABCC1P33527 1531 aa6.24□□□□□ -1.41
VPS13C-204ENST00000395898 SYCP2Q9BX26 1530 aa6.24□□□□□ -1.41
VPS13C-204ENST00000395898 TUBB4AP04350 444 aa6.23□□□□□ -1.41
VPS13C-204ENST00000395898 IL15P40933 162 aaPredicted RBP6.23□□□□□ -1.41
VPS13C-204ENST00000395898 PRIMPOLQ96LW4 560 aa6.23□□□□□ -1.41
VPS13C-204ENST00000395898 IKBKGQ9Y6K9 419 aa6.23□□□□□ -1.41
VPS13C-204ENST00000395898 TTC41PQ6P2S7 1318 aa6.23□□□□□ -1.41
VPS13C-204ENST00000395898 TBCAO75347 108 aaKnown RBP6.23□□□□□ -1.41
VPS13C-204ENST00000395898 NBPF6Q5VWK0 638 aa6.23□□□□□ -1.41
VPS13C-204ENST00000395898 NBPF5PQ86XG9 351 aaPredicted RBP6.23□□□□□ -1.41
VPS13C-204ENST00000395898 RHPN1Q8TCX5 695 aa6.23□□□□□ -1.41
VPS13C-204ENST00000395898 NBPF4Q96M43 638 aa6.23□□□□□ -1.41
VPS13C-204ENST00000395898 CALCOCO1Q9P1Z2 691 aa6.23□□□□□ -1.41
VPS13C-204ENST00000395898 C11orf95C9JLR9 678 aaPredicted RBP6.23□□□□□ -1.41
VPS13C-204ENST00000395898 ZFYVE9O95405 1425 aa6.23□□□□□ -1.41
VPS13C-204ENST00000395898 IDEP14735 1019 aa6.23□□□□□ -1.41
VPS13C-204ENST00000395898 SMARCC1Q92922 1105 aaPredicted RBP6.23□□□□□ -1.41
VPS13C-204ENST00000395898 PUS7Q96PZ0 661 aaKnown RBP6.23□□□□□ -1.41
VPS13C-204ENST00000395898 UTP14AQ9BVJ6 771 aaKnown RBP6.23□□□□□ -1.41
VPS13C-204ENST00000395898 USP25Q9UHP3 1055 aa6.23□□□□□ -1.41
VPS13C-204ENST00000395898 CTR9Q6PD62 1173 aa6.23□□□□□ -1.41
VPS13C-204ENST00000395898 LRSAM1Q6UWE0 723 aa6.23□□□□□ -1.41
VPS13C-204ENST00000395898 VAT1LQ9HCJ6 419 aa6.23□□□□□ -1.41
VPS13C-204ENST00000395898 B4DLN1 442 aa6.23□□□□□ -1.41
VPS13C-204ENST00000395898 MRPL12P52815 198 aaKnown RBP6.23□□□□□ -1.41
VPS13C-204ENST00000395898 HDAC9Q9UKV0 1011 aa6.23□□□□□ -1.41
VPS13C-204ENST00000395898 ATP5J2-PTCD1G3V325 749 aa6.23□□□□□ -1.41
VPS13C-204ENST00000395898 PRC1O43663 620 aa6.23□□□□□ -1.41
VPS13C-204ENST00000395898 RTN1Q16799 776 aa6.23□□□□□ -1.41
VPS13C-204ENST00000395898 TRIM47Q96LD4 638 aa6.23□□□□□ -1.41
VPS13C-204ENST00000395898 DISP3Q9P2K9 1392 aa6.23□□□□□ -1.41
VPS13C-204ENST00000395898 SPAG1Q07617 926 aa6.23□□□□□ -1.41
VPS13C-204ENST00000395898 TSNARE1Q96NA8 513 aa6.23□□□□□ -1.41
VPS13C-204ENST00000395898 TFIP11Q9UBB9 837 aaKnown RBP6.23□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 10.6 ms