RNA–Protein interactions for RNA: ENST00000393120.6

MKS1-203, Transcript of Meckel syndrome, type 1, humanhuman

TSL 2

Gene MKS1, Length 1,926 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MKS1-203ENST00000393120 SH2B1Q9NRF2 756 aaPredicted RBP17.17■□□□□ 0.34
MKS1-203ENST00000393120 PDRG1Q9NUG6 133 aa17.17■□□□□ 0.34
MKS1-203ENST00000393120 HMG20BQ9P0W2 317 aa17.17■□□□□ 0.34
MKS1-203ENST00000393120 ZSCAN21Q9Y5A6 473 aaPredicted RBP17.17■□□□□ 0.34
MKS1-203ENST00000393120 ROBO1Q9Y6N7 1651 aa17.16■□□□□ 0.34
MKS1-203ENST00000393120 SLC27A2O14975 620 aa17.16■□□□□ 0.34
MKS1-203ENST00000393120 TAF5LO75529 589 aa17.16■□□□□ 0.34
MKS1-203ENST00000393120 RPAP1Q9BWH6 1393 aaPredicted RBP17.16■□□□□ 0.34
MKS1-203ENST00000393120 MAP3K15Q6ZN16 1313 aa17.16■□□□□ 0.34
MKS1-203ENST00000393120 GIGYF2Q6Y7W6 1299 aaKnown RBP17.15■□□□□ 0.34
MKS1-203ENST00000393120 ZBTB38Q8NAP3 1195 aaPredicted RBP17.15■□□□□ 0.34
MKS1-203ENST00000393120 WDR33Q9C0J8 1336 aaKnown RBP17.15■□□□□ 0.34
MKS1-203ENST00000393120 COL16A1Q07092 1604 aaPredicted RBP17.15■□□□□ 0.34
MKS1-203ENST00000393120 CSF1RP07333 972 aa17.15■□□□□ 0.34
MKS1-203ENST00000393120 CYP19A1P11511 503 aaPredicted RBP17.15■□□□□ 0.34
MKS1-203ENST00000393120 KCNJ4P48050 445 aa17.15■□□□□ 0.34
MKS1-203ENST00000393120 KBTBD3Q8NAB2 608 aa17.15■□□□□ 0.34
MKS1-203ENST00000393120 PPIL4Q8WUA2 492 aaKnown RBP eCLIP17.15■□□□□ 0.34
MKS1-203ENST00000393120 HSP90AB3PQ58FF7 597 aa17.14■□□□□ 0.33
MKS1-203ENST00000393120 EDC3Q96F86 508 aaKnown RBP17.14■□□□□ 0.33
MKS1-203ENST00000393120 CDHR2Q9BYE9 1310 aa17.14■□□□□ 0.33
MKS1-203ENST00000393120 CCDC57Q2TAC2 916 aa17.13■□□□□ 0.33
MKS1-203ENST00000393120 ZNF589Q86UQ0 364 aaPredicted RBP17.13■□□□□ 0.33
MKS1-203ENST00000393120 GRPEL1Q9HAV7 217 aa17.13■□□□□ 0.33
MKS1-203ENST00000393120 THRAP3Q9Y2W1 955 aaKnown RBP17.13■□□□□ 0.33
MKS1-203ENST00000393120 ITGB4P16144 1822 aa17.13■□□□□ 0.33
MKS1-203ENST00000393120 PALLDQ8WX93 1383 aa17.13■□□□□ 0.33
MKS1-203ENST00000393120 PRPF40AO75400 957 aaKnown RBP17.13■□□□□ 0.33
MKS1-203ENST00000393120 MCMDC2Q4G0Z9 681 aa17.13■□□□□ 0.33
MKS1-203ENST00000393120 LRRC24Q50LG9 513 aa17.13■□□□□ 0.33
MKS1-203ENST00000393120 SLC4A9Q96Q91 983 aa17.13■□□□□ 0.33
MKS1-203ENST00000393120 ZNF609O15014 1411 aa17.13■□□□□ 0.33
MKS1-203ENST00000393120 CPA1P15085 419 aa17.12■□□□□ 0.33
MKS1-203ENST00000393120 KRT32Q14532 448 aa17.12■□□□□ 0.33
MKS1-203ENST00000393120 ANKRD1Q15327 319 aa17.12■□□□□ 0.33
MKS1-203ENST00000393120 CEP126Q9P2H0 1117 aa17.12■□□□□ 0.33
MKS1-203ENST00000393120 SH3TC1Q8TE82 1336 aa17.12■□□□□ 0.33
MKS1-203ENST00000393120 ERVV-1B6SEH8 477 aa17.11■□□□□ 0.33
MKS1-203ENST00000393120 PDIA4P13667 645 aaKnown RBP17.11■□□□□ 0.33
MKS1-203ENST00000393120 ZNF445P59923 1031 aa17.11■□□□□ 0.33
MKS1-203ENST00000393120 TIMM10P62072 90 aa17.11■□□□□ 0.33
MKS1-203ENST00000393120 NEUROD6Q96NK8 337 aa17.11■□□□□ 0.33
MKS1-203ENST00000393120 DNAJC2Q99543 621 aaKnown RBP17.11■□□□□ 0.33
MKS1-203ENST00000393120 AKAP2Q9Y2D5 859 aa17.11■□□□□ 0.33
MKS1-203ENST00000393120 U3KPZ7 1027 aaPredicted RBP17.11■□□□□ 0.33
MKS1-203ENST00000393120 GAS2L3Q86XJ1 694 aa17.11■□□□□ 0.33
MKS1-203ENST00000393120 ZNF594Q96JF6 807 aaPredicted RBP17.11■□□□□ 0.33
MKS1-203ENST00000393120 HELLSQ9NRZ9 838 aa17.11■□□□□ 0.33
MKS1-203ENST00000393120 A0A1B0GUL7 405 aa17.1■□□□□ 0.33
MKS1-203ENST00000393120 BLOC1S2Q6QNY1 142 aa17.1■□□□□ 0.33
MKS1-203ENST00000393120 NLRP10Q86W26 655 aa17.1■□□□□ 0.33
MKS1-203ENST00000393120 PAG1Q9NWQ8 432 aa17.1■□□□□ 0.33
MKS1-203ENST00000393120 SMC3Q9UQE7 1217 aa17.1■□□□□ 0.33
MKS1-203ENST00000393120 ZNF330Q9Y3S2 320 aaPredicted RBP17.1■□□□□ 0.33
MKS1-203ENST00000393120 MBD3O95983 291 aa17.09■□□□□ 0.33
MKS1-203ENST00000393120 RPS6KB1P23443 525 aa17.09■□□□□ 0.33
MKS1-203ENST00000393120 IL6STP40189 918 aaPredicted RBP17.09■□□□□ 0.33
MKS1-203ENST00000393120 FAM89AQ96GI7 184 aa17.09■□□□□ 0.33
MKS1-203ENST00000393120 PUS3Q9BZE2 481 aaKnown RBP17.09■□□□□ 0.33
MKS1-203ENST00000393120 SPATA31A1Q5TZJ5 1347 aa17.09■□□□□ 0.33
MKS1-203ENST00000393120 IFIT5Q13325 482 aaKnown RBP17.09■□□□□ 0.33
MKS1-203ENST00000393120 HLFQ16534 295 aa17.09■□□□□ 0.33
MKS1-203ENST00000393120 DDX46Q7L014 1031 aaKnown RBP17.09■□□□□ 0.33
MKS1-203ENST00000393120 GPT2Q8TD30 523 aa17.09■□□□□ 0.33
MKS1-203ENST00000393120 LTBP4Q8N2S1 1624 aa17.09■□□□□ 0.33
MKS1-203ENST00000393120 LARGE1O95461 756 aa17.08■□□□□ 0.33
MKS1-203ENST00000393120 ZSCAN22P10073 491 aaPredicted RBP17.08■□□□□ 0.33
MKS1-203ENST00000393120 PRIM1P49642 420 aaKnown RBP17.08■□□□□ 0.33
MKS1-203ENST00000393120 ME3Q16798 604 aa17.08■□□□□ 0.33
MKS1-203ENST00000393120 NDUFB9Q9Y6M9 179 aa17.08■□□□□ 0.33
MKS1-203ENST00000393120 GOLIM4O00461 696 aa17.08■□□□□ 0.32
MKS1-203ENST00000393120 STX6O43752 255 aa17.08■□□□□ 0.32
MKS1-203ENST00000393120 SYT1P21579 422 aa17.08■□□□□ 0.32
MKS1-203ENST00000393120 ZMYM1Q5SVZ6 1142 aa17.08■□□□□ 0.32
MKS1-203ENST00000393120 FOXD4L5Q5VV16 416 aaPredicted RBP17.08■□□□□ 0.32
MKS1-203ENST00000393120 FOXD4L4Q8WXT5 416 aaPredicted RBP17.08■□□□□ 0.32
MKS1-203ENST00000393120 ZBTB1Q9Y2K1 713 aa17.08■□□□□ 0.32
MKS1-203ENST00000393120 WNK3Q9BYP7 1800 aa17.07■□□□□ 0.32
MKS1-203ENST00000393120 SPEF2Q9C093 1822 aa17.07■□□□□ 0.32
MKS1-203ENST00000393120 IFIT1P09914 478 aaKnown RBP17.07■□□□□ 0.32
MKS1-203ENST00000393120 CAVIN1Q6NZI2 390 aaKnown RBP17.07■□□□□ 0.32
MKS1-203ENST00000393120 TMEM87AQ8NBN3 555 aa17.07■□□□□ 0.32
MKS1-203ENST00000393120 LARP6Q9BRS8 491 aaKnown RBP17.07■□□□□ 0.32
MKS1-203ENST00000393120 DSCC1Q9BVC3 393 aa17.07■□□□□ 0.32
MKS1-203ENST00000393120 TPCN1Q9ULQ1 816 aa17.07■□□□□ 0.32
MKS1-203ENST00000393120 LRRFIP1Q32MZ4 808 aaKnown RBP17.06■□□□□ 0.32
MKS1-203ENST00000393120 ZSCAN23Q3MJ62 389 aa17.06■□□□□ 0.32
MKS1-203ENST00000393120 CCDC158Q5M9N0 1113 aa17.06■□□□□ 0.32
MKS1-203ENST00000393120 CCDC83Q8IWF9 413 aa17.06■□□□□ 0.32
MKS1-203ENST00000393120 TTLL11Q8NHH1 800 aa17.06■□□□□ 0.32
MKS1-203ENST00000393120 ATP6V1DQ9Y5K8 247 aa17.06■□□□□ 0.32
MKS1-203ENST00000393120 ABCC12Q96J65 1359 aa17.06■□□□□ 0.32
MKS1-203ENST00000393120 RNF113AO15541 343 aaKnown RBP17.06■□□□□ 0.32
MKS1-203ENST00000393120 NCLP19338 710 aaKnown RBP17.06■□□□□ 0.32
MKS1-203ENST00000393120 ST3GAL1Q11201 340 aa17.06■□□□□ 0.32
MKS1-203ENST00000393120 AK7Q96M32 723 aa17.06■□□□□ 0.32
MKS1-203ENST00000393120 SEC62Q99442 399 aaKnown RBP17.06■□□□□ 0.32
MKS1-203ENST00000393120 RIPOR2Q9Y4F9 1068 aa17.06■□□□□ 0.32
MKS1-203ENST00000393120 GJB2P29033 226 aa17.05■□□□□ 0.32
MKS1-203ENST00000393120 CTSWP56202 376 aa17.05■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms