RNA–Protein interactions for RNA: ENST00000392003.6

COL6A3-204, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2 BASIC

Gene COL6A3, Length 3,464 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-204ENST00000392003 PHF14O94880 888 aa11.51□□□□□ -0.57
COL6A3-204ENST00000392003 TPM2P07951 284 aa11.51□□□□□ -0.57
COL6A3-204ENST00000392003 VPS53Q5VIR6 699 aa11.51□□□□□ -0.57
COL6A3-204ENST00000392003 KLHDC4Q8TBB5 520 aa11.51□□□□□ -0.57
COL6A3-204ENST00000392003 SCN11AQ9UI33 1791 aa11.51□□□□□ -0.57
COL6A3-204ENST00000392003 ADAMTS7Q9UKP4 1686 aa11.51□□□□□ -0.57
COL6A3-204ENST00000392003 ZSCAN20P17040 1043 aaPredicted RBP11.51□□□□□ -0.57
COL6A3-204ENST00000392003 COPRSQ9NQ92 184 aa11.51□□□□□ -0.57
COL6A3-204ENST00000392003 ESPNB1AK53 854 aa11.5□□□□□ -0.57
COL6A3-204ENST00000392003 CDK11BP21127 795 aaKnown RBP11.5□□□□□ -0.57
COL6A3-204ENST00000392003 DNTTIP2Q5QJE6 756 aaKnown RBP11.5□□□□□ -0.57
COL6A3-204ENST00000392003 PLBD2Q8NHP8 589 aa11.5□□□□□ -0.57
COL6A3-204ENST00000392003 ERVV-2B6SEH9 535 aa11.5□□□□□ -0.57
COL6A3-204ENST00000392003 RUFY3Q7L099 469 aa11.5□□□□□ -0.57
COL6A3-204ENST00000392003 CHAMP1Q96JM3 812 aa11.5□□□□□ -0.57
COL6A3-204ENST00000392003 LARP6Q9BRS8 491 aaKnown RBP11.5□□□□□ -0.57
COL6A3-204ENST00000392003 CSPP1Q1MSJ5 1256 aa11.5□□□□□ -0.57
COL6A3-204ENST00000392003 CREB3L3Q68CJ9 461 aa11.5□□□□□ -0.57
COL6A3-204ENST00000392003 FAM227BQ96M60 508 aa11.5□□□□□ -0.57
COL6A3-204ENST00000392003 STX6O43752 255 aa11.49□□□□□ -0.57
COL6A3-204ENST00000392003 PRR29P0C7W0 189 aa11.49□□□□□ -0.57
COL6A3-204ENST00000392003 EPHA10Q5JZY3 1008 aa11.49□□□□□ -0.57
COL6A3-204ENST00000392003 LRSAM1Q6UWE0 723 aa11.49□□□□□ -0.57
COL6A3-204ENST00000392003 CCDC83Q8IWF9 413 aa11.49□□□□□ -0.57
COL6A3-204ENST00000392003 ABCC6O95255 1503 aa11.49□□□□□ -0.57
COL6A3-204ENST00000392003 SYCE3A1L190 88 aa11.49□□□□□ -0.57
COL6A3-204ENST00000392003 EXOC5O00471 708 aa11.49□□□□□ -0.57
COL6A3-204ENST00000392003 ZSCAN22P10073 491 aaPredicted RBP11.49□□□□□ -0.57
COL6A3-204ENST00000392003 CPA1P15085 419 aa11.49□□□□□ -0.57
COL6A3-204ENST00000392003 BLOC1S2Q6QNY1 142 aa11.49□□□□□ -0.57
COL6A3-204ENST00000392003 ZSWIM6Q9HCJ5 1215 aa11.49□□□□□ -0.57
COL6A3-204ENST00000392003 TLR7Q9NYK1 1049 aaKnown RBP11.49□□□□□ -0.57
COL6A3-204ENST00000392003 PRIM1P49642 420 aaKnown RBP11.48□□□□□ -0.57
COL6A3-204ENST00000392003 NECTIN1Q15223 517 aa11.48□□□□□ -0.57
COL6A3-204ENST00000392003 ANKRD1Q15327 319 aa11.48□□□□□ -0.57
COL6A3-204ENST00000392003 ZBTB3Q9H5J0 574 aa11.48□□□□□ -0.57
COL6A3-204ENST00000392003 TMEM63CQ9P1W3 806 aa11.48□□□□□ -0.57
COL6A3-204ENST00000392003 A1BGP04217 495 aa11.48□□□□□ -0.57
COL6A3-204ENST00000392003 MAP4K1Q92918 833 aa11.48□□□□□ -0.57
COL6A3-204ENST00000392003 ATP5JP18859 108 aa11.48□□□□□ -0.57
COL6A3-204ENST00000392003 TFCP2Q12800 502 aa11.48□□□□□ -0.57
COL6A3-204ENST00000392003 TNNI3KQ59H18 835 aa11.48□□□□□ -0.57
COL6A3-204ENST00000392003 FPGT-TNNI3KV9GXZ4 949 aa11.48□□□□□ -0.57
COL6A3-204ENST00000392003 KAT6BQ8WYB5 2073 aa11.48□□□□□ -0.57
COL6A3-204ENST00000392003 HSP90B1P14625 803 aaKnown RBP11.47□□□□□ -0.57
COL6A3-204ENST00000392003 SYT1P21579 422 aa11.47□□□□□ -0.57
COL6A3-204ENST00000392003 ADCK5Q3MIX3 580 aa11.47□□□□□ -0.57
COL6A3-204ENST00000392003 KCNB2Q92953 911 aa11.47□□□□□ -0.57
COL6A3-204ENST00000392003 PPP1R9BQ96SB3 815 aa11.47□□□□□ -0.57
COL6A3-204ENST00000392003 DNAJC2Q99543 621 aaKnown RBP11.47□□□□□ -0.57
COL6A3-204ENST00000392003 HMG20BQ9P0W2 317 aa11.47□□□□□ -0.57
COL6A3-204ENST00000392003 SLC27A2O14975 620 aa11.47□□□□□ -0.57
COL6A3-204ENST00000392003 GJB2P29033 226 aa11.47□□□□□ -0.57
COL6A3-204ENST00000392003 PTPN12Q05209 780 aaKnown RBP11.47□□□□□ -0.57
COL6A3-204ENST00000392003 LMBR1LQ6UX01 489 aa11.47□□□□□ -0.57
COL6A3-204ENST00000392003 USP48Q86UV5 1035 aa11.47□□□□□ -0.57
COL6A3-204ENST00000392003 RBSNQ9H1K0 784 aa11.47□□□□□ -0.57
COL6A3-204ENST00000392003 GDPD2Q9HCC8 539 aa11.47□□□□□ -0.57
COL6A3-204ENST00000392003 CWC25Q9NXE8 425 aaPredicted RBP11.47□□□□□ -0.57
COL6A3-204ENST00000392003 C5P01031 1676 aa11.47□□□□□ -0.57
COL6A3-204ENST00000392003 A0A0D9SFI3 127 aa11.47□□□□□ -0.57
COL6A3-204ENST00000392003 KRT32Q14532 448 aa11.47□□□□□ -0.57
COL6A3-204ENST00000392003 STRCP1A6NGW2 1772 aa11.46□□□□□ -0.57
COL6A3-204ENST00000392003 FAM193AP78312 1265 aa11.46□□□□□ -0.57
COL6A3-204ENST00000392003 RABL6Q3YEC7 729 aaPredicted RBP11.46□□□□□ -0.57
COL6A3-204ENST00000392003 UTP14CQ5TAP6 766 aaKnown RBP11.46□□□□□ -0.57
COL6A3-204ENST00000392003 EP400NLQ6ZTU2 488 aa11.46□□□□□ -0.57
COL6A3-204ENST00000392003 TSPY26PQ9H489 355 aa11.46□□□□□ -0.57
COL6A3-204ENST00000392003 MRC1P22897 1456 aa11.46□□□□□ -0.57
COL6A3-204ENST00000392003 VPS37CA5D8V6 355 aaPredicted RBP11.46□□□□□ -0.58
COL6A3-204ENST00000392003 F13A1P00488 732 aa11.46□□□□□ -0.58
COL6A3-204ENST00000392003 MSNP26038 577 aaKnown RBP11.46□□□□□ -0.58
COL6A3-204ENST00000392003 NEUROD6Q96NK8 337 aa11.46□□□□□ -0.58
COL6A3-204ENST00000392003 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP11.46□□□□□ -0.58
COL6A3-204ENST00000392003 CRYBG1Q9Y4K1 1723 aa11.46□□□□□ -0.58
COL6A3-204ENST00000392003 COL18A1P39060 1754 aa11.46□□□□□ -0.58
COL6A3-204ENST00000392003 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP11.45□□□□□ -0.58
COL6A3-204ENST00000392003 STARD3NLO95772 234 aa11.45□□□□□ -0.58
COL6A3-204ENST00000392003 PDCP20941 246 aa11.45□□□□□ -0.58
COL6A3-204ENST00000392003 LRP10Q7Z4F1 713 aa11.45□□□□□ -0.58
COL6A3-204ENST00000392003 NSFL1CQ9UNZ2 370 aaKnown RBP11.45□□□□□ -0.58
COL6A3-204ENST00000392003 TPRNQ4KMQ1 711 aa11.45□□□□□ -0.58
COL6A3-204ENST00000392003 DBNLQ9UJU6 430 aaKnown RBP11.45□□□□□ -0.58
COL6A3-204ENST00000392003 TAOK2Q9UL54 1235 aa11.45□□□□□ -0.58
COL6A3-204ENST00000392003 COL15A1P39059 1388 aa11.45□□□□□ -0.58
COL6A3-204ENST00000392003 RFX5P48382 616 aaPredicted RBP11.45□□□□□ -0.58
COL6A3-204ENST00000392003 KIF6Q6ZMV9 814 aa11.45□□□□□ -0.58
COL6A3-204ENST00000392003 CGNQ9P2M7 1197 aaKnown RBP11.45□□□□□ -0.58
COL6A3-204ENST00000392003 RPAP1Q9BWH6 1393 aaPredicted RBP11.45□□□□□ -0.58
COL6A3-204ENST00000392003 LETM1O95202 739 aaPredicted RBP11.44□□□□□ -0.58
COL6A3-204ENST00000392003 DBNDD2Q9BQY9 259 aa11.44□□□□□ -0.58
COL6A3-204ENST00000392003 SNRKQ9NRH2 765 aa11.44□□□□□ -0.58
COL6A3-204ENST00000392003 CNPY2Q9Y2B0 182 aa11.44□□□□□ -0.58
COL6A3-204ENST00000392003 U3KPZ7 1027 aaPredicted RBP11.44□□□□□ -0.58
COL6A3-204ENST00000392003 FIBPO43427 364 aa11.44□□□□□ -0.58
COL6A3-204ENST00000392003 LARGE1O95461 756 aa11.44□□□□□ -0.58
COL6A3-204ENST00000392003 LARP1BQ659C4 914 aaKnown RBP11.44□□□□□ -0.58
COL6A3-204ENST00000392003 TTLL7Q6ZT98 887 aa11.44□□□□□ -0.58
COL6A3-204ENST00000392003 UBE2HP62256 183 aa11.44□□□□□ -0.58
COL6A3-204ENST00000392003 NECAB1Q8N987 351 aa11.44□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms