RNA–Protein interactions for RNA: ENST00000384622.1

RNU6-540P-201, Transcript of RNA, U6 small nuclear 540, pseudogene, humanhuman

BASIC

Gene RNU6-540P, Length 101 nt, Biotype snRNA, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU6-540P-201ENST00000384622 TATP17735 454 aaPredicted RBP1.85□□□□□ -2.11
RNU6-540P-201ENST00000384622 LINC00310P59036 64 aa1.85□□□□□ -2.11
RNU6-540P-201ENST00000384622 PLP2Q04941 152 aa1.85□□□□□ -2.11
RNU6-540P-201ENST00000384622 SFSWAPQ12872 951 aaKnown RBP1.85□□□□□ -2.11
RNU6-540P-201ENST00000384622 TMEM259Q4ZIN3 620 aa1.85□□□□□ -2.11
RNU6-540P-201ENST00000384622 XKR5Q6UX68 686 aa1.85□□□□□ -2.11
RNU6-540P-201ENST00000384622 ZFPM1Q8IX07 1006 aa1.85□□□□□ -2.11
RNU6-540P-201ENST00000384622 DCAF11Q8TEB1 546 aa1.85□□□□□ -2.11
RNU6-540P-201ENST00000384622 MBNL3Q9NUK0 354 aaKnown RBP1.85□□□□□ -2.11
RNU6-540P-201ENST00000384622 FKBPLQ9UIM3 349 aa1.85□□□□□ -2.11
RNU6-540P-201ENST00000384622 SMG5Q9UPR3 1016 aaKnown RBP1.85□□□□□ -2.11
RNU6-540P-201ENST00000384622 HRH3Q9Y5N1 445 aa1.85□□□□□ -2.11
RNU6-540P-201ENST00000384622 GRIK5Q16478 980 aa1.84□□□□□ -2.11
RNU6-540P-201ENST00000384622 SPRED2Q7Z698 418 aa1.84□□□□□ -2.11
RNU6-540P-201ENST00000384622 PI4K2BQ8TCG2 481 aa1.84□□□□□ -2.11
RNU6-540P-201ENST00000384622 XAGE2Q96GT9 111 aa1.84□□□□□ -2.11
RNU6-540P-201ENST00000384622 OSBPL3Q9H4L5 887 aa1.84□□□□□ -2.11
RNU6-540P-201ENST00000384622 NAGPAQ9UK23 515 aa1.84□□□□□ -2.11
RNU6-540P-201ENST00000384622 PCDHB15Q9Y5E8 787 aa1.84□□□□□ -2.11
RNU6-540P-201ENST00000384622 MATN3O15232 486 aa1.83□□□□□ -2.12
RNU6-540P-201ENST00000384622 SART1O43290 800 aaKnown RBP1.83□□□□□ -2.12
RNU6-540P-201ENST00000384622 TRAK2O60296 914 aa1.83□□□□□ -2.12
RNU6-540P-201ENST00000384622 GIGYF1O75420 1035 aaPredicted RBP1.83□□□□□ -2.12
RNU6-540P-201ENST00000384622 NBPF1Q3BBV0 1214 aa1.83□□□□□ -2.12
RNU6-540P-201ENST00000384622 LRCH2Q5VUJ6 765 aa1.83□□□□□ -2.12
RNU6-540P-201ENST00000384622 CDCP2Q5VXM1 449 aa1.83□□□□□ -2.12
RNU6-540P-201ENST00000384622 FAM117BQ6P1L5 589 aa1.83□□□□□ -2.12
RNU6-540P-201ENST00000384622 HHIPL2Q6UWX4 724 aa1.83□□□□□ -2.12
RNU6-540P-201ENST00000384622 BICDL1Q6ZP65 573 aa1.83□□□□□ -2.12
RNU6-540P-201ENST00000384622 STK11IPQ8N1F8 1099 aa1.83□□□□□ -2.12
RNU6-540P-201ENST00000384622 BHMTQ93088 406 aa1.83□□□□□ -2.12
RNU6-540P-201ENST00000384622 XYLT2Q9H1B5 865 aa1.83□□□□□ -2.12
RNU6-540P-201ENST00000384622 GPCPD1Q9NPB8 672 aa1.83□□□□□ -2.12
RNU6-540P-201ENST00000384622 ZC3H7BQ9UGR2 993 aaKnown RBP1.83□□□□□ -2.12
RNU6-540P-201ENST00000384622 ADAMTS6Q9UKP5 1117 aa1.83□□□□□ -2.12
RNU6-540P-201ENST00000384622 GPSM3Q9Y4H4 160 aa1.83□□□□□ -2.12
RNU6-540P-201ENST00000384622 IQCJ-SCHIP1C9J366 451 aaPredicted RBP1.82□□□□□ -2.12
RNU6-540P-201ENST00000384622 CYR61O00622 381 aa1.82□□□□□ -2.12
RNU6-540P-201ENST00000384622 SASH1O94885 1247 aa1.82□□□□□ -2.12
RNU6-540P-201ENST00000384622 MED14OSP0DP75 135 aa1.82□□□□□ -2.12
RNU6-540P-201ENST00000384622 FUT4P22083 530 aa1.82□□□□□ -2.12
RNU6-540P-201ENST00000384622 GJA5P36382 358 aa1.82□□□□□ -2.12
RNU6-540P-201ENST00000384622 SCTRP47872 440 aa1.82□□□□□ -2.12
RNU6-540P-201ENST00000384622 BRPF1P55201 1214 aaPredicted RBP1.82□□□□□ -2.12
RNU6-540P-201ENST00000384622 CCDC125Q86Z20 511 aa1.82□□□□□ -2.12
RNU6-540P-201ENST00000384622 ARHGEF1Q92888 912 aaKnown RBP1.82□□□□□ -2.12
RNU6-540P-201ENST00000384622 DNAJB12Q9NXW2 375 aaKnown RBP1.82□□□□□ -2.12
RNU6-540P-201ENST00000384622 OTOL1A6NHN0 477 aaPredicted RBP1.81□□□□□ -2.12
RNU6-540P-201ENST00000384622 ETV2O00321 342 aaPredicted RBP1.81□□□□□ -2.12
RNU6-540P-201ENST00000384622 CLCN1P35523 988 aa1.81□□□□□ -2.12
RNU6-540P-201ENST00000384622 RBM26Q5T8P6 1007 aaKnown RBP1.81□□□□□ -2.12
RNU6-540P-201ENST00000384622 PPP1R3FQ6ZSY5 799 aaPredicted RBP1.81□□□□□ -2.12
RNU6-540P-201ENST00000384622 ACAD11Q709F0 780 aa1.81□□□□□ -2.12
RNU6-540P-201ENST00000384622 FAM35AQ86V20 835 aa1.81□□□□□ -2.12
RNU6-540P-201ENST00000384622 COL26A1Q96A83 441 aa1.81□□□□□ -2.12
RNU6-540P-201ENST00000384622 DIRC2Q96SL1 478 aa1.81□□□□□ -2.12
RNU6-540P-201ENST00000384622 LRRC4CQ9HCJ2 640 aa1.81□□□□□ -2.12
RNU6-540P-201ENST00000384622 CRIM1Q9NZV1 1036 aa1.81□□□□□ -2.12
RNU6-540P-201ENST00000384622 TRIM13O60858 407 aa1.8□□□□□ -2.12
RNU6-540P-201ENST00000384622 CPB1P15086 417 aa1.8□□□□□ -2.12
RNU6-540P-201ENST00000384622 GLDCP23378 1020 aa1.8□□□□□ -2.12
RNU6-540P-201ENST00000384622 BNIP3Q12983 259 aa1.8□□□□□ -2.12
RNU6-540P-201ENST00000384622 ESCO1Q5FWF5 840 aa1.8□□□□□ -2.12
RNU6-540P-201ENST00000384622 LCE1EQ5T753 118 aa1.8□□□□□ -2.12
RNU6-540P-201ENST00000384622 ELMSAN1Q6PJG2 1045 aa1.8□□□□□ -2.12
RNU6-540P-201ENST00000384622 WFDC3Q8IUB2 231 aa1.8□□□□□ -2.12
RNU6-540P-201ENST00000384622 SHISA5Q8N114 240 aa1.8□□□□□ -2.12
RNU6-540P-201ENST00000384622 FLAD1Q8NFF5 587 aa1.8□□□□□ -2.12
RNU6-540P-201ENST00000384622 HELBQ8NG08 1087 aaPredicted RBP1.8□□□□□ -2.12
RNU6-540P-201ENST00000384622 CABLES1Q8TDN4 633 aa1.8□□□□□ -2.12
RNU6-540P-201ENST00000384622 NIFKQ9BYG3 293 aaKnown RBP1.8□□□□□ -2.12
RNU6-540P-201ENST00000384622 ADAM19Q9H013 955 aa1.8□□□□□ -2.12
RNU6-540P-201ENST00000384622 SRA1Q9HD15 236 aaKnown RBP1.8□□□□□ -2.12
RNU6-540P-201ENST00000384622 FRRS1LQ9P0K9 344 aa1.8□□□□□ -2.12
RNU6-540P-201ENST00000384622 C11orf21Q9P2W6 132 aa1.8□□□□□ -2.12
RNU6-540P-201ENST00000384622 HIF3AQ9Y2N7 669 aa1.8□□□□□ -2.12
RNU6-540P-201ENST00000384622 ZC3H4Q9UPT8 1303 aaKnown RBP1.8□□□□□ -2.12
RNU6-540P-201ENST00000384622 EGFRP00533 1210 aa1.79□□□□□ -2.12
RNU6-540P-201ENST00000384622 C6P13671 934 aa1.79□□□□□ -2.12
RNU6-540P-201ENST00000384622 PLAURQ03405 335 aa1.79□□□□□ -2.12
RNU6-540P-201ENST00000384622 TLR1Q15399 786 aa1.79□□□□□ -2.12
RNU6-540P-201ENST00000384622 TCERG1LQ5VWI1 586 aa1.79□□□□□ -2.12
RNU6-540P-201ENST00000384622 RSBN1LQ6PCB5 846 aaPredicted RBP1.79□□□□□ -2.12
RNU6-540P-201ENST00000384622 LRRC69Q6ZNQ3 347 aa1.79□□□□□ -2.12
RNU6-540P-201ENST00000384622 KRTAP5-2Q701N4 177 aa1.79□□□□□ -2.12
RNU6-540P-201ENST00000384622 MAP4K3Q8IVH8 894 aa1.79□□□□□ -2.12
RNU6-540P-201ENST00000384622 KRI1Q8N9T8 703 aaKnown RBP1.79□□□□□ -2.12
RNU6-540P-201ENST00000384622 KCNN1Q92952 543 aa1.79□□□□□ -2.12
RNU6-540P-201ENST00000384622 ZNF764Q96H86 408 aaPredicted RBP1.79□□□□□ -2.12
RNU6-540P-201ENST00000384622 LPIN3Q9BQK8 851 aa1.79□□□□□ -2.12
RNU6-540P-201ENST00000384622 NSUN3Q9H649 340 aaKnown RBP1.79□□□□□ -2.12
RNU6-540P-201ENST00000384622 NEUROD4Q9HD90 331 aa1.79□□□□□ -2.12
RNU6-540P-201ENST00000384622 ZDHHC3Q9NYG2 299 aa1.79□□□□□ -2.12
RNU6-540P-201ENST00000384622 NUTM2BA6NNL0 878 aaPredicted RBP1.78□□□□□ -2.12
RNU6-540P-201ENST00000384622 NUTM2EB1AL46 878 aaPredicted RBP1.78□□□□□ -2.12
RNU6-540P-201ENST00000384622 WISP1O95388 367 aa1.78□□□□□ -2.12
RNU6-540P-201ENST00000384622 GLI1P08151 1106 aa1.78□□□□□ -2.12
RNU6-540P-201ENST00000384622 CD8BP10966 210 aa1.78□□□□□ -2.12
RNU6-540P-201ENST00000384622 MAP4P27816 1152 aaKnown RBP1.78□□□□□ -2.12
RNU6-540P-201ENST00000384622 RXRBP28702 533 aa1.78□□□□□ -2.12
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms