RNA–Protein interactions for RNA: ENST00000380393.7

PTPRA-204, Transcript of protein tyrosine phosphatase, receptor type A, humanhuman

TSL 1 (best) BASIC

Gene PTPRA, Length 3,636 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRA-204ENST00000380393 TSHZ1Q6ZSZ6 1077 aa10.9□□□□□ -0.66
PTPRA-204ENST00000380393 USP48Q86UV5 1035 aa10.9□□□□□ -0.66
PTPRA-204ENST00000380393 ANKRD18AQ8IVF6 992 aa10.9□□□□□ -0.66
PTPRA-204ENST00000380393 TMEM2Q9UHN6 1383 aa10.9□□□□□ -0.66
PTPRA-204ENST00000380393 ELP1O95163 1332 aa10.9□□□□□ -0.66
PTPRA-204ENST00000380393 U2AF1L5P0DN76 240 aaPredicted RBP10.9□□□□□ -0.66
PTPRA-204ENST00000380393 U2AF1Q01081 240 aaKnown RBP eCLIP10.9□□□□□ -0.667e-6■■■■□ 20
PTPRA-204ENST00000380393 GORABQ5T7V8 394 aa10.9□□□□□ -0.66
PTPRA-204ENST00000380393 SOS1Q07889 1333 aaPredicted RBP10.9□□□□□ -0.66
PTPRA-204ENST00000380393 MYOM2P54296 1465 aa10.9□□□□□ -0.67
PTPRA-204ENST00000380393 RPS6KA3P51812 740 aa10.9□□□□□ -0.67
PTPRA-204ENST00000380393 SKIDA1Q1XH10 827 aa10.9□□□□□ -0.67
PTPRA-204ENST00000380393 TRIM5Q9C035 493 aa10.9□□□□□ -0.67
PTPRA-204ENST00000380393 FAM107BQ9H098 131 aa10.9□□□□□ -0.67
PTPRA-204ENST00000380393 ORC3Q9UBD5 711 aaPredicted RBP10.9□□□□□ -0.67
PTPRA-204ENST00000380393 CRYMQ14894 314 aa10.89□□□□□ -0.67
PTPRA-204ENST00000380393 USP26Q9BXU7 913 aa10.89□□□□□ -0.67
PTPRA-204ENST00000380393 C1orf115Q9H7X2 142 aa10.89□□□□□ -0.67
PTPRA-204ENST00000380393 MCM8Q9UJA3 840 aa10.89□□□□□ -0.67
PTPRA-204ENST00000380393 SMC3Q9UQE7 1217 aa10.89□□□□□ -0.67
PTPRA-204ENST00000380393 IBSPP21815 317 aaPredicted RBP10.89□□□□□ -0.67
PTPRA-204ENST00000380393 NAP1L1P55209 391 aaKnown RBP10.89□□□□□ -0.67
PTPRA-204ENST00000380393 DHX8Q14562 1220 aaKnown RBP10.89□□□□□ -0.67
PTPRA-204ENST00000380393 BMP2KLQ5H9B9 411 aa10.89□□□□□ -0.67
PTPRA-204ENST00000380393 BAG1Q99933 345 aaPredicted RBP10.89□□□□□ -0.67
PTPRA-204ENST00000380393 GOPCQ9HD26 462 aa10.89□□□□□ -0.67
PTPRA-204ENST00000380393 CABP2Q9NPB3 220 aa10.89□□□□□ -0.67
PTPRA-204ENST00000380393 ODF2LQ9ULJ1 636 aa10.89□□□□□ -0.67
PTPRA-204ENST00000380393 SNX1Q13596 522 aa10.89□□□□□ -0.67
PTPRA-204ENST00000380393 CCDC30Q5VVM6 783 aa10.89□□□□□ -0.67
PTPRA-204ENST00000380393 ZNF232Q9UNY5 417 aa10.89□□□□□ -0.67
PTPRA-204ENST00000380393 SCAF11Q99590 1463 aaKnown RBP10.88□□□□□ -0.67
PTPRA-204ENST00000380393 SNUPNO95149 360 aaKnown RBP10.88□□□□□ -0.67
PTPRA-204ENST00000380393 GPTP24298 496 aa10.88□□□□□ -0.67
PTPRA-204ENST00000380393 RUNDC1Q96C34 613 aa10.88□□□□□ -0.67
PTPRA-204ENST00000380393 A1CFQ9NQ94 594 aaKnown RBP10.88□□□□□ -0.67
PTPRA-204ENST00000380393 BIN2Q9UBW5 565 aaPredicted RBP10.88□□□□□ -0.67
PTPRA-204ENST00000380393 CLIP2Q9UDT6 1046 aa10.88□□□□□ -0.67
PTPRA-204ENST00000380393 IFT172Q9UG01 1749 aa10.88□□□□□ -0.67
PTPRA-204ENST00000380393 NRXN1Q9ULB1 1477 aa10.88□□□□□ -0.67
PTPRA-204ENST00000380393 H3BQF6 201 aa10.88□□□□□ -0.67
PTPRA-204ENST00000380393 FAM163BP0C2L3 166 aa10.88□□□□□ -0.67
PTPRA-204ENST00000380393 EXOSC9Q06265 439 aaKnown RBP10.88□□□□□ -0.67
PTPRA-204ENST00000380393 MICAL1Q8TDZ2 1067 aa10.88□□□□□ -0.67
PTPRA-204ENST00000380393 PARD3BQ8TEW8 1205 aa10.88□□□□□ -0.67
PTPRA-204ENST00000380393 DDX11Q96FC9 970 aa10.88□□□□□ -0.67
PTPRA-204ENST00000380393 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP10.88□□□□□ -0.676e-7■■■□□ 15.6
PTPRA-204ENST00000380393 FRMD3A2A2Y4 597 aa10.88□□□□□ -0.67
PTPRA-204ENST00000380393 PPFIA2O75334 1257 aa10.88□□□□□ -0.67
PTPRA-204ENST00000380393 BRD1O95696 1058 aa10.88□□□□□ -0.67
PTPRA-204ENST00000380393 SETSIPP0DME0 302 aa10.88□□□□□ -0.67
PTPRA-204ENST00000380393 THEMISQ8N1K5 641 aaPredicted RBP10.88□□□□□ -0.67
PTPRA-204ENST00000380393 NCKAP5LQ9HCH0 1330 aa10.87□□□□□ -0.67
PTPRA-204ENST00000380393 ZFYVE9O95405 1425 aa10.87□□□□□ -0.67
PTPRA-204ENST00000380393 EIF3JO75822 258 aaKnown RBP10.87□□□□□ -0.67
PTPRA-204ENST00000380393 TRIM27P14373 513 aa10.87□□□□□ -0.67
PTPRA-204ENST00000380393 TBC1D25Q3MII6 688 aa10.87□□□□□ -0.67
PTPRA-204ENST00000380393 L2HGDHQ9H9P8 463 aa10.87□□□□□ -0.67
PTPRA-204ENST00000380393 KIF9Q9HAQ2 790 aa10.87□□□□□ -0.67
PTPRA-204ENST00000380393 NOB1Q9ULX3 412 aaKnown RBP10.87□□□□□ -0.67
PTPRA-204ENST00000380393 EID1Q9Y6B2 187 aa10.87□□□□□ -0.67
PTPRA-204ENST00000380393 PTPRMP28827 1452 aa10.87□□□□□ -0.67
PTPRA-204ENST00000380393 APBB1O00213 710 aa10.87□□□□□ -0.67
PTPRA-204ENST00000380393 NRDCO43847 1150 aa10.87□□□□□ -0.67
PTPRA-204ENST00000380393 PEX19P40855 299 aa10.87□□□□□ -0.67
PTPRA-204ENST00000380393 CLNS1AP54105 237 aaKnown RBP10.87□□□□□ -0.67
PTPRA-204ENST00000380393 PDCD2Q16342 344 aaPredicted RBP10.87□□□□□ -0.67
PTPRA-204ENST00000380393 CC2D1AQ6P1N0 951 aaPredicted RBP10.87□□□□□ -0.67
PTPRA-204ENST00000380393 TMEM57Q8N5G2 664 aa10.87□□□□□ -0.67
PTPRA-204ENST00000380393 TMX3Q96JJ7 454 aa10.87□□□□□ -0.67
PTPRA-204ENST00000380393 KCNA4P22459 653 aa10.86□□□□□ -0.67
PTPRA-204ENST00000380393 SLC12A5Q9H2X9 1139 aa10.86□□□□□ -0.67
PTPRA-204ENST00000380393 ARFGAP3Q9NP61 516 aa10.86□□□□□ -0.67
PTPRA-204ENST00000380393 A0A1B0GUA9 196 aa10.86□□□□□ -0.67
PTPRA-204ENST00000380393 MFSD4BQ5TF39 518 aa10.86□□□□□ -0.67
PTPRA-204ENST00000380393 NOL8Q76FK4 1167 aaKnown RBP10.86□□□□□ -0.67
PTPRA-204ENST00000380393 ZBTB10Q96DT7 871 aa10.86□□□□□ -0.67
PTPRA-204ENST00000380393 DDX19BQ9UMR2 479 aa10.86□□□□□ -0.67
PTPRA-204ENST00000380393 ADGRB1O14514 1584 aa10.86□□□□□ -0.67
PTPRA-204ENST00000380393 PPFIA4O75335 1185 aa10.86□□□□□ -0.67
PTPRA-204ENST00000380393 SKAP2O75563 359 aaPredicted RBP10.86□□□□□ -0.67
PTPRA-204ENST00000380393 CCDC192P0DO97 292 aa10.86□□□□□ -0.67
PTPRA-204ENST00000380393 NEFHP12036 1026 aa10.86□□□□□ -0.67
PTPRA-204ENST00000380393 PDE6BP35913 854 aa10.86□□□□□ -0.67
PTPRA-204ENST00000380393 ACRBPQ8NEB7 543 aa10.86□□□□□ -0.67
PTPRA-204ENST00000380393 CHCHD3Q9NX63 227 aaKnown RBP10.86□□□□□ -0.67
PTPRA-204ENST00000380393 ASXL1Q8IXJ9 1541 aa10.86□□□□□ -0.67
PTPRA-204ENST00000380393 SKILP12757 684 aa10.85□□□□□ -0.67
PTPRA-204ENST00000380393 ATP2B2Q01814 1243 aa10.85□□□□□ -0.67
PTPRA-204ENST00000380393 CRACR2AQ9BSW2 395 aa10.85□□□□□ -0.67
PTPRA-204ENST00000380393 FUCA2Q9BTY2 467 aa10.85□□□□□ -0.67
PTPRA-204ENST00000380393 G3BP2Q9UN86 482 aaKnown RBP10.85□□□□□ -0.67
PTPRA-204ENST00000380393 TPD52L2O43399 206 aaKnown RBP10.85□□□□□ -0.67
PTPRA-204ENST00000380393 ICA1Q05084 483 aa10.85□□□□□ -0.67
PTPRA-204ENST00000380393 LUZP1Q86V48 1076 aa10.85□□□□□ -0.67
PTPRA-204ENST00000380393 NUTM1Q86Y26 1132 aa10.85□□□□□ -0.67
PTPRA-204ENST00000380393 FAM200AQ8TCP9 573 aa10.85□□□□□ -0.67
PTPRA-204ENST00000380393 SSH1Q8WYL5 1049 aa10.85□□□□□ -0.67
PTPRA-204ENST00000380393 MRFAP1L1Q96HT8 127 aa10.85□□□□□ -0.67
PTPRA-204ENST00000380393 RMI1Q9H9A7 625 aa10.85□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms