RNA–Protein interactions for RNA: ENST00000379433.5

NEDD9-201, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 1 (best) BASIC

Gene NEDD9, Length 3,341 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-201ENST00000379433 BICDL1Q6ZP65 573 aa13□□□□□ -0.33
NEDD9-201ENST00000379433 ERC1Q8IUD2 1116 aa13□□□□□ -0.33
NEDD9-201ENST00000379433 KCTD17Q8N5Z5 321 aa13□□□□□ -0.33
NEDD9-201ENST00000379433 SNX21Q969T3 373 aa13□□□□□ -0.33
NEDD9-201ENST00000379433 NGLY1Q96IV0 654 aa13□□□□□ -0.33
NEDD9-201ENST00000379433 STARD3NLO95772 234 aa12.99□□□□□ -0.33
NEDD9-201ENST00000379433 NMIQ13287 307 aaPredicted RBP12.99□□□□□ -0.33
NEDD9-201ENST00000379433 LRP10Q7Z4F1 713 aa12.99□□□□□ -0.33
NEDD9-201ENST00000379433 DBNLQ9UJU6 430 aaKnown RBP12.99□□□□□ -0.33
NEDD9-201ENST00000379433 HELBQ8NG08 1087 aaPredicted RBP12.99□□□□□ -0.33
NEDD9-201ENST00000379433 TMX3Q96JJ7 454 aa12.99□□□□□ -0.33
NEDD9-201ENST00000379433 STRCQ7RTU9 1775 aa12.98□□□□□ -0.33
NEDD9-201ENST00000379433 MTMR7Q9Y216 660 aa12.98□□□□□ -0.33
NEDD9-201ENST00000379433 GOLIM4O00461 696 aa12.98□□□□□ -0.33
NEDD9-201ENST00000379433 COL9A3Q14050 684 aaPredicted RBP12.98□□□□□ -0.33
NEDD9-201ENST00000379433 CCDC57Q2TAC2 916 aa12.98□□□□□ -0.33
NEDD9-201ENST00000379433 JAKMIP1Q96N16 626 aaKnown RBP12.98□□□□□ -0.33
NEDD9-201ENST00000379433 A0A0D9SFI3 127 aa12.98□□□□□ -0.33
NEDD9-201ENST00000379433 SNAP23O00161 211 aa12.98□□□□□ -0.33
NEDD9-201ENST00000379433 CCDC24Q8N4L8 307 aa12.98□□□□□ -0.33
NEDD9-201ENST00000379433 SGSM2O43147 1006 aa12.97□□□□□ -0.33
NEDD9-201ENST00000379433 ATP6V1AP38606 617 aa12.97□□□□□ -0.33
NEDD9-201ENST00000379433 STK3Q13188 491 aa12.97□□□□□ -0.33
NEDD9-201ENST00000379433 ADCK5Q3MIX3 580 aa12.97□□□□□ -0.33
NEDD9-201ENST00000379433 SLC4A9Q96Q91 983 aa12.97□□□□□ -0.33
NEDD9-201ENST00000379433 TRMT112Q9UI30 125 aaKnown RBP12.97□□□□□ -0.33
NEDD9-201ENST00000379433 TNNI3KQ59H18 835 aa12.97□□□□□ -0.33
NEDD9-201ENST00000379433 GDPD2Q9HCC8 539 aa12.97□□□□□ -0.33
NEDD9-201ENST00000379433 FPGT-TNNI3KV9GXZ4 949 aa12.97□□□□□ -0.33
NEDD9-201ENST00000379433 LMO7Q8WWI1 1683 aa12.97□□□□□ -0.33
NEDD9-201ENST00000379433 HCLS1P14317 486 aaPredicted RBP12.96□□□□□ -0.33
NEDD9-201ENST00000379433 PHF14O94880 888 aa12.96□□□□□ -0.34
NEDD9-201ENST00000379433 MTX1Q13505 466 aa12.96□□□□□ -0.34
NEDD9-201ENST00000379433 PI16Q6UXB8 463 aa12.96□□□□□ -0.34
NEDD9-201ENST00000379433 ZNF589Q86UQ0 364 aaPredicted RBP12.96□□□□□ -0.34
NEDD9-201ENST00000379433 LRRC2Q9BYS8 371 aa12.96□□□□□ -0.34
NEDD9-201ENST00000379433 TAF6LQ9Y6J9 622 aa12.96□□□□□ -0.34
NEDD9-201ENST00000379433 PHRF1Q9P1Y6 1649 aaKnown RBP12.96□□□□□ -0.34
NEDD9-201ENST00000379433 NCOA3Q9Y6Q9 1424 aa12.96□□□□□ -0.34
NEDD9-201ENST00000379433 FOSBP53539 338 aa12.95□□□□□ -0.34
NEDD9-201ENST00000379433 GBP4Q96PP9 640 aa12.95□□□□□ -0.34
NEDD9-201ENST00000379433 KDM3BQ7LBC6 1761 aa12.95□□□□□ -0.34
NEDD9-201ENST00000379433 UTRNP46939 3433 aa12.95□□□□□ -0.34
NEDD9-201ENST00000379433 PTF1AQ7RTS3 328 aa12.95□□□□□ -0.34
NEDD9-201ENST00000379433 NECAB1Q8N987 351 aa12.95□□□□□ -0.34
NEDD9-201ENST00000379433 EVI5LQ96CN4 794 aa12.95□□□□□ -0.34
NEDD9-201ENST00000379433 SNX14Q9Y5W7 946 aa12.95□□□□□ -0.34
NEDD9-201ENST00000379433 CACNA1FO60840 1977 aa12.94□□□□□ -0.34
NEDD9-201ENST00000379433 PXDNLA1KZ92 1463 aa12.94□□□□□ -0.34
NEDD9-201ENST00000379433 XIRP1Q702N8 1843 aaKnown RBP12.94□□□□□ -0.34
NEDD9-201ENST00000379433 DZIP3Q86Y13 1208 aaKnown RBP12.94□□□□□ -0.34
NEDD9-201ENST00000379433 MPNDQ8N594 471 aa12.94□□□□□ -0.34
NEDD9-201ENST00000379433 RUFY2Q8WXA3 655 aa12.94□□□□□ -0.34
NEDD9-201ENST00000379433 DDX49Q9Y6V7 483 aaKnown RBP12.94□□□□□ -0.34
NEDD9-201ENST00000379433 PRPF40AO75400 957 aaKnown RBP12.94□□□□□ -0.34
NEDD9-201ENST00000379433 FOXO4P98177 505 aa12.94□□□□□ -0.34
NEDD9-201ENST00000379433 CNNM1Q9NRU3 951 aa12.94□□□□□ -0.34
NEDD9-201ENST00000379433 RBM8AQ9Y5S9 174 aaKnown RBP12.94□□□□□ -0.34
NEDD9-201ENST00000379433 ADORA1P30542 326 aa12.93□□□□□ -0.34
NEDD9-201ENST00000379433 TTC41PQ6P2S7 1318 aa12.93□□□□□ -0.34
NEDD9-201ENST00000379433 USP54Q70EL1 1684 aa12.93□□□□□ -0.34
NEDD9-201ENST00000379433 TCIRG1Q13488 830 aa12.93□□□□□ -0.34
NEDD9-201ENST00000379433 CCDC83Q8IWF9 413 aa12.93□□□□□ -0.34
NEDD9-201ENST00000379433 STK11IPQ8N1F8 1099 aa12.93□□□□□ -0.34
NEDD9-201ENST00000379433 LSG1Q9H089 658 aaKnown RBP12.93□□□□□ -0.34
NEDD9-201ENST00000379433 CEP126Q9P2H0 1117 aa12.93□□□□□ -0.34
NEDD9-201ENST00000379433 SRCAPQ6ZRS2 3230 aa12.93□□□□□ -0.34
NEDD9-201ENST00000379433 AK2P54819 239 aa12.93□□□□□ -0.34
NEDD9-201ENST00000379433 WASHC4Q2M389 1173 aa12.93□□□□□ -0.34
NEDD9-201ENST00000379433 LDHAL6AQ6ZMR3 332 aa12.93□□□□□ -0.34
NEDD9-201ENST00000379433 A0A1B0GUL7 405 aa12.92□□□□□ -0.34
NEDD9-201ENST00000379433 RFX5P48382 616 aaPredicted RBP12.92□□□□□ -0.34
NEDD9-201ENST00000379433 IFIT5Q13325 482 aaKnown RBP12.92□□□□□ -0.34
NEDD9-201ENST00000379433 RAB3GAP1Q15042 981 aa12.92□□□□□ -0.34
NEDD9-201ENST00000379433 GREM2Q9H772 168 aa12.92□□□□□ -0.34
NEDD9-201ENST00000379433 TMEM51Q9NW97 253 aa12.92□□□□□ -0.34
NEDD9-201ENST00000379433 IQSEC3Q9UPP2 1182 aaPredicted RBP12.92□□□□□ -0.34
NEDD9-201ENST00000379433 C5P01031 1676 aa12.92□□□□□ -0.34
NEDD9-201ENST00000379433 GOLGA6L22H0YM25 854 aa12.92□□□□□ -0.34
NEDD9-201ENST00000379433 NPHP1O15259 732 aa12.92□□□□□ -0.34
NEDD9-201ENST00000379433 ZKSCAN1P17029 563 aaPredicted RBP12.92□□□□□ -0.34
NEDD9-201ENST00000379433 METTL24Q5JXM2 366 aa12.92□□□□□ -0.34
NEDD9-201ENST00000379433 CHST3Q7LGC8 479 aa12.92□□□□□ -0.34
NEDD9-201ENST00000379433 COL18A1P39060 1754 aa12.92□□□□□ -0.34
NEDD9-201ENST00000379433 H7C1W4 665 aa12.91□□□□□ -0.34
NEDD9-201ENST00000379433 PIAS4Q8N2W9 510 aaPredicted RBP12.91□□□□□ -0.34
NEDD9-201ENST00000379433 MARCH10Q8NA82 808 aaPredicted RBP12.91□□□□□ -0.34
NEDD9-201ENST00000379433 CCDC191Q8NCU4 936 aa12.91□□□□□ -0.34
NEDD9-201ENST00000379433 COPRSQ9NQ92 184 aa12.91□□□□□ -0.34
NEDD9-201ENST00000379433 IFIT1P09914 478 aaKnown RBP12.91□□□□□ -0.34
NEDD9-201ENST00000379433 HSPA4P34932 840 aa12.91□□□□□ -0.34
NEDD9-201ENST00000379433 NKX1-1Q15270 411 aaPredicted RBP12.91□□□□□ -0.34
NEDD9-201ENST00000379433 RAD50Q92878 1312 aa12.91□□□□□ -0.34
NEDD9-201ENST00000379433 TAF5LO75529 589 aa12.91□□□□□ -0.34
NEDD9-201ENST00000379433 BAG4O95429 457 aaKnown RBP12.91□□□□□ -0.34
NEDD9-201ENST00000379433 LARGE1O95461 756 aa12.91□□□□□ -0.34
NEDD9-201ENST00000379433 IRS4O14654 1257 aaPredicted RBP12.9□□□□□ -0.34
NEDD9-201ENST00000379433 TOM1O60784 492 aa12.9□□□□□ -0.34
NEDD9-201ENST00000379433 ITGA6P23229 1130 aa12.9□□□□□ -0.34
NEDD9-201ENST00000379433 UTYO14607 1347 aa12.9□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms