RNA–Protein interactions for RNA: ENST00000378839.1

CCDC3-202, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CCDC3, Length 3,180 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-202ENST00000378839 TPCN1Q9ULQ1 816 aa16.09■□□□□ 0.17
CCDC3-202ENST00000378839 TCHHQ07283 1943 aa16.08■□□□□ 0.17
CCDC3-202ENST00000378839 SYCE3A1L190 88 aa16.08■□□□□ 0.17
CCDC3-202ENST00000378839 TM6SF1Q9BZW5 370 aa16.08■□□□□ 0.17
CCDC3-202ENST00000378839 ZBTB3Q9H5J0 574 aa16.08■□□□□ 0.17
CCDC3-202ENST00000378839 STRN4Q9NRL3 753 aa16.08■□□□□ 0.17
CCDC3-202ENST00000378839 CCDC9Q9Y3X0 531 aaKnown RBP16.08■□□□□ 0.17
CCDC3-202ENST00000378839 JCADQ9P266 1359 aa16.08■□□□□ 0.17
CCDC3-202ENST00000378839 LTBP4Q8N2S1 1624 aa16.08■□□□□ 0.16
CCDC3-202ENST00000378839 TOGARAM1Q9Y4F4 1720 aa16.08■□□□□ 0.16
CCDC3-202ENST00000378839 ATP5JP18859 108 aa16.08■□□□□ 0.16
CCDC3-202ENST00000378839 CCDC129Q6ZRS4 1044 aa16.08■□□□□ 0.16
CCDC3-202ENST00000378839 ERVV-2B6SEH9 535 aa16.07■□□□□ 0.16
CCDC3-202ENST00000378839 CNPY2Q9Y2B0 182 aa16.07■□□□□ 0.16
CCDC3-202ENST00000378839 WDR33Q9C0J8 1336 aaKnown RBP16.07■□□□□ 0.16
CCDC3-202ENST00000378839 TAF5LO75529 589 aa16.07■□□□□ 0.16
CCDC3-202ENST00000378839 ZNF594Q96JF6 807 aaPredicted RBP16.07■□□□□ 0.16
CCDC3-202ENST00000378839 CYP46A1Q9Y6A2 500 aa16.07■□□□□ 0.16
CCDC3-202ENST00000378839 ZNF609O15014 1411 aa16.06■□□□□ 0.16
CCDC3-202ENST00000378839 IL2RBP14784 551 aa16.06■□□□□ 0.16
CCDC3-202ENST00000378839 ZSCAN22P10073 491 aaPredicted RBP16.06■□□□□ 0.16
CCDC3-202ENST00000378839 PPP1R9BQ96SB3 815 aa16.06■□□□□ 0.16
CCDC3-202ENST00000378839 CARD10Q9BWT7 1032 aa16.06■□□□□ 0.16
CCDC3-202ENST00000378839 TNS2Q63HR2 1409 aa16.06■□□□□ 0.16
CCDC3-202ENST00000378839 STX6O43752 255 aa16.06■□□□□ 0.16
CCDC3-202ENST00000378839 GJB2P29033 226 aa16.06■□□□□ 0.16
CCDC3-202ENST00000378839 LRRC24Q50LG9 513 aa16.06■□□□□ 0.16
CCDC3-202ENST00000378839 DNAJC2Q99543 621 aaKnown RBP16.05■□□□□ 0.16
CCDC3-202ENST00000378839 HIP1O00291 1037 aa16.04■□□□□ 0.16
CCDC3-202ENST00000378839 TIMM10P62072 90 aa16.04■□□□□ 0.16
CCDC3-202ENST00000378839 TOB2Q14106 344 aaPredicted RBP16.04■□□□□ 0.16
CCDC3-202ENST00000378839 DDX46Q7L014 1031 aaKnown RBP16.04■□□□□ 0.16
CCDC3-202ENST00000378839 CHMP3Q9Y3E7 222 aa16.04■□□□□ 0.16
CCDC3-202ENST00000378839 LRSAM1Q6UWE0 723 aa16.04■□□□□ 0.16
CCDC3-202ENST00000378839 HAUS7Q99871 368 aa16.04■□□□□ 0.16
CCDC3-202ENST00000378839 PUS3Q9BZE2 481 aaKnown RBP16.04■□□□□ 0.16
CCDC3-202ENST00000378839 SMC3Q9UQE7 1217 aa16.04■□□□□ 0.16
CCDC3-202ENST00000378839 MTMR6Q9Y217 621 aa16.04■□□□□ 0.16
CCDC3-202ENST00000378839 KCNJ4P48050 445 aa16.03■□□□□ 0.16
CCDC3-202ENST00000378839 ZMYND15Q9H091 742 aa16.03■□□□□ 0.16
CCDC3-202ENST00000378839 CWC25Q9NXE8 425 aaPredicted RBP16.03■□□□□ 0.16
CCDC3-202ENST00000378839 USPL1Q5W0Q7 1092 aa16.03■□□□□ 0.16
CCDC3-202ENST00000378839 F13A1P00488 732 aa16.03■□□□□ 0.16
CCDC3-202ENST00000378839 ASAP1Q9ULH1 1129 aa16.03■□□□□ 0.16
CCDC3-202ENST00000378839 ZSCAN21Q9Y5A6 473 aaPredicted RBP16.03■□□□□ 0.16
CCDC3-202ENST00000378839 A0A0G2JLW4 131 aa16.02■□□□□ 0.16
CCDC3-202ENST00000378839 ZKSCAN1P17029 563 aaPredicted RBP16.02■□□□□ 0.16
CCDC3-202ENST00000378839 TPRNQ4KMQ1 711 aa16.02■□□□□ 0.16
CCDC3-202ENST00000378839 RPS6KB1P23443 525 aa16.01■□□□□ 0.15
CCDC3-202ENST00000378839 TMEM87AQ8NBN3 555 aa16.01■□□□□ 0.15
CCDC3-202ENST00000378839 ESPNB1AK53 854 aa16.01■□□□□ 0.15
CCDC3-202ENST00000378839 MBD3O95983 291 aa16.01■□□□□ 0.15
CCDC3-202ENST00000378839 CLCN1P35523 988 aa16.01■□□□□ 0.15
CCDC3-202ENST00000378839 CCDC173Q0VFZ6 552 aa16.01■□□□□ 0.15
CCDC3-202ENST00000378839 SYNE4Q8N205 404 aa16.01■□□□□ 0.15
CCDC3-202ENST00000378839 PIGBQ92521 554 aa16.01■□□□□ 0.15
CCDC3-202ENST00000378839 TSGA10IPQ3SY00 556 aa16■□□□□ 0.15
CCDC3-202ENST00000378839 NEUROD6Q96NK8 337 aa16■□□□□ 0.15
CCDC3-202ENST00000378839 ARID3AQ99856 593 aa16■□□□□ 0.15
CCDC3-202ENST00000378839 SH2B1Q9NRF2 756 aaPredicted RBP16■□□□□ 0.15
CCDC3-202ENST00000378839 DNM1Q05193 864 aaKnown RBP15.99■□□□□ 0.15
CCDC3-202ENST00000378839 STOX1Q6ZVD7 989 aa15.99■□□□□ 0.15
CCDC3-202ENST00000378839 CCDC191Q8NCU4 936 aa15.99■□□□□ 0.15
CCDC3-202ENST00000378839 ZSCAN31Q96LW9 406 aaPredicted RBP15.99■□□□□ 0.15
CCDC3-202ENST00000378839 ISCA1Q9BUE6 129 aa15.99■□□□□ 0.15
CCDC3-202ENST00000378839 CYP21A2P08686 494 aa15.99■□□□□ 0.15
CCDC3-202ENST00000378839 EVA1CP58658 441 aa15.99■□□□□ 0.15
CCDC3-202ENST00000378839 BLOC1S2Q6QNY1 142 aa15.99■□□□□ 0.15
CCDC3-202ENST00000378839 DNAJC10Q8IXB1 793 aa15.99■□□□□ 0.15
CCDC3-202ENST00000378839 RNF214Q8ND24 703 aa15.99■□□□□ 0.15
CCDC3-202ENST00000378839 GOLIM4O00461 696 aa15.99■□□□□ 0.15
CCDC3-202ENST00000378839 FAM173BQ6P4H8 233 aa15.98■□□□□ 0.15
CCDC3-202ENST00000378839 CCDC85AQ96PX6 553 aaPredicted RBP15.98■□□□□ 0.15
CCDC3-202ENST00000378839 SLC4A9Q96Q91 983 aa15.98■□□□□ 0.15
CCDC3-202ENST00000378839 ZNF330Q9Y3S2 320 aaPredicted RBP15.98■□□□□ 0.15
CCDC3-202ENST00000378839 FIBPO43427 364 aa15.98■□□□□ 0.15
CCDC3-202ENST00000378839 STK3Q13188 491 aa15.98■□□□□ 0.15
CCDC3-202ENST00000378839 CDC37L1Q7L3B6 337 aa15.98■□□□□ 0.15
CCDC3-202ENST00000378839 KBTBD3Q8NAB2 608 aa15.98■□□□□ 0.15
CCDC3-202ENST00000378839 PDLIM2Q96JY6 352 aa15.98■□□□□ 0.15
CCDC3-202ENST00000378839 ATG3Q9NT62 314 aa15.98■□□□□ 0.15
CCDC3-202ENST00000378839 TNKS1BP1Q9C0C2 1729 aaKnown RBP15.98■□□□□ 0.15
CCDC3-202ENST00000378839 EYA2O00167 538 aa15.97■□□□□ 0.15
CCDC3-202ENST00000378839 PSMA5P28066 241 aa15.97■□□□□ 0.15
CCDC3-202ENST00000378839 MCMDC2Q4G0Z9 681 aa15.97■□□□□ 0.15
CCDC3-202ENST00000378839 ALDH8A1Q9H2A2 487 aaPredicted RBP15.97■□□□□ 0.15
CCDC3-202ENST00000378839 FAM89AQ96GI7 184 aa15.97■□□□□ 0.15
CCDC3-202ENST00000378839 TMOD3Q9NYL9 352 aa15.97■□□□□ 0.15
CCDC3-202ENST00000378839 ADORA1P30542 326 aa15.96■□□□□ 0.15
CCDC3-202ENST00000378839 TCIRG1Q13488 830 aa15.96■□□□□ 0.15
CCDC3-202ENST00000378839 LRRC2Q9BYS8 371 aa15.96■□□□□ 0.15
CCDC3-202ENST00000378839 PAG1Q9NWQ8 432 aa15.96■□□□□ 0.15
CCDC3-202ENST00000378839 NHSL1Q5SYE7 1610 aa15.96■□□□□ 0.15
CCDC3-202ENST00000378839 A0A1B0GUL7 405 aa15.96■□□□□ 0.15
CCDC3-202ENST00000378839 VPS37CA5D8V6 355 aaPredicted RBP15.96■□□□□ 0.15
CCDC3-202ENST00000378839 HLFQ16534 295 aa15.96■□□□□ 0.15
CCDC3-202ENST00000378839 RNF20Q5VTR2 975 aa15.96■□□□□ 0.15
CCDC3-202ENST00000378839 BTG4Q9NY30 223 aa15.96■□□□□ 0.15
CCDC3-202ENST00000378839 EIF2AK3Q9NZJ5 1116 aaKnown RBP15.96■□□□□ 0.15
CCDC3-202ENST00000378839 IL15P40933 162 aaPredicted RBP15.95■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 9.1 ms