RNA–Protein interactions for RNA: ENST00000378676.1

SHROOM1-202, Transcript of shroom family member 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SHROOM1, Length 2,352 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-202ENST00000378676 TNNI3KQ59H18 835 aa23.31■■□□□ 1.32
SHROOM1-202ENST00000378676 CCDC39Q9UFE4 941 aa23.31■■□□□ 1.32
SHROOM1-202ENST00000378676 FPGT-TNNI3KV9GXZ4 949 aa23.31■■□□□ 1.32
SHROOM1-202ENST00000378676 ATP5J2-PTCD1G3V325 749 aa23.3■■□□□ 1.32
SHROOM1-202ENST00000378676 PTCD1O75127 700 aaKnown RBP23.3■■□□□ 1.32
SHROOM1-202ENST00000378676 DCAF5Q96JK2 942 aa23.3■■□□□ 1.32
SHROOM1-202ENST00000378676 DCCP43146 1447 aa23.3■■□□□ 1.32
SHROOM1-202ENST00000378676 BLOC1S2Q6QNY1 142 aa23.3■■□□□ 1.32
SHROOM1-202ENST00000378676 FMNL2Q96PY5 1086 aa23.3■■□□□ 1.32
SHROOM1-202ENST00000378676 CHGBP05060 677 aa23.29■■□□□ 1.32
SHROOM1-202ENST00000378676 RPS6KB1P23443 525 aa23.29■■□□□ 1.32
SHROOM1-202ENST00000378676 PSMA5P28066 241 aa23.29■■□□□ 1.32
SHROOM1-202ENST00000378676 RABL6Q3YEC7 729 aaPredicted RBP23.29■■□□□ 1.32
SHROOM1-202ENST00000378676 ATF3P18847 181 aa23.29■■□□□ 1.32
SHROOM1-202ENST00000378676 TOB2Q14106 344 aaPredicted RBP23.29■■□□□ 1.32
SHROOM1-202ENST00000378676 ZNF609O15014 1411 aa23.29■■□□□ 1.32
SHROOM1-202ENST00000378676 TNS3Q68CZ2 1445 aa23.29■■□□□ 1.32
SHROOM1-202ENST00000378676 ATP5JP18859 108 aa23.28■■□□□ 1.32
SHROOM1-202ENST00000378676 PDZRN4Q6ZMN7 1036 aaPredicted RBP23.28■■□□□ 1.32
SHROOM1-202ENST00000378676 UBR2Q8IWV8 1755 aa23.28■■□□□ 1.32
SHROOM1-202ENST00000378676 TAF5LO75529 589 aa23.28■■□□□ 1.32
SHROOM1-202ENST00000378676 RNF20Q5VTR2 975 aa23.28■■□□□ 1.32
SHROOM1-202ENST00000378676 CDC37L1Q7L3B6 337 aa23.28■■□□□ 1.32
SHROOM1-202ENST00000378676 HCLS1P14317 486 aaPredicted RBP23.27■■□□□ 1.32
SHROOM1-202ENST00000378676 CASP7P55210 303 aa23.27■■□□□ 1.32
SHROOM1-202ENST00000378676 DBNDD2Q9BQY9 259 aa23.27■■□□□ 1.32
SHROOM1-202ENST00000378676 A0A087WZG4 1122 aa23.26■■□□□ 1.31
SHROOM1-202ENST00000378676 HSP90AA2PQ14568 343 aaPredicted RBP23.26■■□□□ 1.31
SHROOM1-202ENST00000378676 FAM184AQ8NB25 1140 aa23.26■■□□□ 1.31
SHROOM1-202ENST00000378676 LARP1BQ659C4 914 aaKnown RBP23.26■■□□□ 1.31
SHROOM1-202ENST00000378676 CCDC129Q6ZRS4 1044 aa23.26■■□□□ 1.31
SHROOM1-202ENST00000378676 FERMT3Q86UX7 667 aa23.26■■□□□ 1.31
SHROOM1-202ENST00000378676 USP25Q9UHP3 1055 aa23.26■■□□□ 1.31
SHROOM1-202ENST00000378676 FUCA2Q9BTY2 467 aa23.25■■□□□ 1.31
SHROOM1-202ENST00000378676 TPM2P07951 284 aa23.25■■□□□ 1.31
SHROOM1-202ENST00000378676 CABP4P57796 275 aa23.25■■□□□ 1.31
SHROOM1-202ENST00000378676 USPL1Q5W0Q7 1092 aa23.25■■□□□ 1.31
SHROOM1-202ENST00000378676 FAM173BQ6P4H8 233 aa23.25■■□□□ 1.31
SHROOM1-202ENST00000378676 GIMAP6Q6P9H5 292 aa23.25■■□□□ 1.31
SHROOM1-202ENST00000378676 DNAJC2Q99543 621 aaKnown RBP23.25■■□□□ 1.31
SHROOM1-202ENST00000378676 ALDH8A1Q9H2A2 487 aaPredicted RBP23.25■■□□□ 1.31
SHROOM1-202ENST00000378676 HMG20BQ9P0W2 317 aa23.25■■□□□ 1.31
SHROOM1-202ENST00000378676 LETM1O95202 739 aaPredicted RBP23.24■■□□□ 1.31
SHROOM1-202ENST00000378676 CSPP1Q1MSJ5 1256 aa23.24■■□□□ 1.31
SHROOM1-202ENST00000378676 UVSSAQ2YD98 709 aa23.24■■□□□ 1.31
SHROOM1-202ENST00000378676 TSGA10IPQ3SY00 556 aa23.24■■□□□ 1.31
SHROOM1-202ENST00000378676 SEC62Q99442 399 aaKnown RBP23.24■■□□□ 1.31
SHROOM1-202ENST00000378676 PLEKHG2Q9H7P9 1386 aa23.24■■□□□ 1.31
SHROOM1-202ENST00000378676 MCM5P33992 734 aa23.23■■□□□ 1.31
SHROOM1-202ENST00000378676 STK3Q13188 491 aa23.23■■□□□ 1.31
SHROOM1-202ENST00000378676 ANKRD1Q15327 319 aa23.23■■□□□ 1.31
SHROOM1-202ENST00000378676 TTC6Q86TZ1 520 aa23.23■■□□□ 1.31
SHROOM1-202ENST00000378676 CADPS2Q86UW7 1296 aa23.23■■□□□ 1.31
SHROOM1-202ENST00000378676 RFX7Q2KHR2 1363 aa23.23■■□□□ 1.31
SHROOM1-202ENST00000378676 XIRP1Q702N8 1843 aaKnown RBP23.23■■□□□ 1.31
SHROOM1-202ENST00000378676 PTMAP06454 111 aaKnown RBP23.23■■□□□ 1.31
SHROOM1-202ENST00000378676 PLBD2Q8NHP8 589 aa23.23■■□□□ 1.31
SHROOM1-202ENST00000378676 MYH15Q9Y2K3 1946 aa23.23■■□□□ 1.31
SHROOM1-202ENST00000378676 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP23.22■■□□□ 1.31
SHROOM1-202ENST00000378676 PAPPAQ13219 1627 aa23.22■■□□□ 1.31
SHROOM1-202ENST00000378676 NBPF26B4DH59 902 aa23.22■■□□□ 1.31
SHROOM1-202ENST00000378676 NBPF14Q5TI25 921 aa23.22■■□□□ 1.31
SHROOM1-202ENST00000378676 NBPF10Q6P3W6 841 aaKnown RBP23.22■■□□□ 1.31
SHROOM1-202ENST00000378676 NBPF15Q8N660 670 aa23.22■■□□□ 1.31
SHROOM1-202ENST00000378676 LMBR1LQ6UX01 489 aa23.21■■□□□ 1.31
SHROOM1-202ENST00000378676 DDX46Q7L014 1031 aaKnown RBP23.21■■□□□ 1.31
SHROOM1-202ENST00000378676 CCDC9Q9Y3X0 531 aaKnown RBP23.21■■□□□ 1.31
SHROOM1-202ENST00000378676 VSIG10Q8N0Z9 540 aa23.21■■□□□ 1.31
SHROOM1-202ENST00000378676 MPNDQ8N594 471 aa23.21■■□□□ 1.31
SHROOM1-202ENST00000378676 HAUS7Q99871 368 aa23.21■■□□□ 1.31
SHROOM1-202ENST00000378676 FOXO4P98177 505 aa23.2■■□□□ 1.3
SHROOM1-202ENST00000378676 ZMYND15Q9H091 742 aa23.2■■□□□ 1.3
SHROOM1-202ENST00000378676 R3HCC1Q9Y3T6 440 aaKnown RBP23.2■■□□□ 1.3
SHROOM1-202ENST00000378676 SHANK3Q9BYB0 1731 aa23.2■■□□□ 1.3
SHROOM1-202ENST00000378676 KRT85P78386 507 aa23.19■■□□□ 1.3
SHROOM1-202ENST00000378676 SPATA31A3Q5VYP0 1347 aa23.19■■□□□ 1.3
SHROOM1-202ENST00000378676 CPDO75976 1380 aa23.19■■□□□ 1.3
SHROOM1-202ENST00000378676 KCPQ6ZWJ8 1503 aa23.19■■□□□ 1.3
SHROOM1-202ENST00000378676 ADCY5O95622 1261 aa23.19■■□□□ 1.3
SHROOM1-202ENST00000378676 TTLL7Q6ZT98 887 aa23.19■■□□□ 1.3
SHROOM1-202ENST00000378676 CHMP3Q9Y3E7 222 aa23.19■■□□□ 1.3
SHROOM1-202ENST00000378676 PDCP20941 246 aa23.18■■□□□ 1.3
SHROOM1-202ENST00000378676 JAK2O60674 1132 aa23.18■■□□□ 1.3
SHROOM1-202ENST00000378676 CYP21A2P08686 494 aa23.18■■□□□ 1.3
SHROOM1-202ENST00000378676 SLFNL1Q499Z3 407 aa23.18■■□□□ 1.3
SHROOM1-202ENST00000378676 NEK1Q96PY6 1258 aa23.18■■□□□ 1.3
SHROOM1-202ENST00000378676 ZNF335Q9H4Z2 1342 aaPredicted RBP23.17■■□□□ 1.3
SHROOM1-202ENST00000378676 H7C1W4 665 aa23.17■■□□□ 1.3
SHROOM1-202ENST00000378676 KRT32Q14532 448 aa23.17■■□□□ 1.3
SHROOM1-202ENST00000378676 ATG9AQ7Z3C6 839 aa23.17■■□□□ 1.3
SHROOM1-202ENST00000378676 LIG1P18858 919 aa23.16■■□□□ 1.3
SHROOM1-202ENST00000378676 MCMDC2Q4G0Z9 681 aa23.16■■□□□ 1.3
SHROOM1-202ENST00000378676 GTF3C6Q969F1 213 aa23.16■■□□□ 1.3
SHROOM1-202ENST00000378676 U3KPZ7 1027 aaPredicted RBP23.16■■□□□ 1.3
SHROOM1-202ENST00000378676 Q6ZUG5 572 aa23.16■■□□□ 1.3
SHROOM1-202ENST00000378676 ELP1O95163 1332 aa23.16■■□□□ 1.3
SHROOM1-202ENST00000378676 STOX1Q6ZVD7 989 aa23.15■■□□□ 1.3
SHROOM1-202ENST00000378676 KBTBD3Q8NAB2 608 aa23.15■■□□□ 1.3
SHROOM1-202ENST00000378676 ZNF830Q96NB3 372 aaPredicted RBP23.15■■□□□ 1.3
SHROOM1-202ENST00000378676 PALLDQ8WX93 1383 aa23.15■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms