RNA–Protein interactions for RNA: ENST00000378034.7

CKAP2-202, Transcript of cytoskeleton associated protein 2, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CKAP2, Length 1,972 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKAP2-202ENST00000378034 CTSWP56202 376 aa16.71■□□□□ 0.27
CKAP2-202ENST00000378034 BBOX1O75936 387 aa16.7■□□□□ 0.26
CKAP2-202ENST00000378034 RTL9Q8NET4 1388 aa16.7■□□□□ 0.26
CKAP2-202ENST00000378034 MS4A1P11836 297 aa16.69■□□□□ 0.26
CKAP2-202ENST00000378034 GRAPQ13588 217 aa16.69■□□□□ 0.26
CKAP2-202ENST00000378034 TMC4Q7Z404 712 aa16.69■□□□□ 0.26
CKAP2-202ENST00000378034 GRAPLQ8TC17 118 aaPredicted RBP16.69■□□□□ 0.26
CKAP2-202ENST00000378034 C7orf43Q8WVR3 580 aa16.69■□□□□ 0.26
CKAP2-202ENST00000378034 GRIPAP1Q4V328 841 aa16.69■□□□□ 0.26
CKAP2-202ENST00000378034 CC2D2BQ6DHV5 1058 aa16.69■□□□□ 0.26
CKAP2-202ENST00000378034 TTLL11Q8NHH1 800 aa16.69■□□□□ 0.26
CKAP2-202ENST00000378034 USP44Q9H0E7 712 aa16.69■□□□□ 0.26
CKAP2-202ENST00000378034 HDAC5Q9UQL6 1122 aa16.69■□□□□ 0.26
CKAP2-202ENST00000378034 C21orf2O43822 256 aa16.68■□□□□ 0.26
CKAP2-202ENST00000378034 CSF1RP07333 972 aa16.68■□□□□ 0.26
CKAP2-202ENST00000378034 PPEF1O14829 653 aaPredicted RBP16.68■□□□□ 0.26
CKAP2-202ENST00000378034 NBPF7P0C2Y1 421 aaPredicted RBP16.68■□□□□ 0.26
CKAP2-202ENST00000378034 ARHGAP27Q6ZUM4 889 aa16.68■□□□□ 0.26
CKAP2-202ENST00000378034 DZIP1LQ8IYY4 767 aaKnown RBP16.68■□□□□ 0.26
CKAP2-202ENST00000378034 FTSJ3Q8IY81 847 aaKnown RBP16.67■□□□□ 0.26
CKAP2-202ENST00000378034 TMX4Q9H1E5 349 aaPredicted RBP16.67■□□□□ 0.26
CKAP2-202ENST00000378034 FOXO4P98177 505 aa16.66■□□□□ 0.26
CKAP2-202ENST00000378034 CCDC93Q567U6 631 aa16.66■□□□□ 0.26
CKAP2-202ENST00000378034 GOLGA6L2Q8N9W4 650 aaPredicted RBP16.66■□□□□ 0.26
CKAP2-202ENST00000378034 CLUAP1Q96AJ1 413 aa16.66■□□□□ 0.26
CKAP2-202ENST00000378034 ATP6V0A2Q9Y487 856 aa16.66■□□□□ 0.26
CKAP2-202ENST00000378034 CHD4Q14839 1912 aa16.66■□□□□ 0.26
CKAP2-202ENST00000378034 RPS8P62241 208 aaKnown RBP16.66■□□□□ 0.26
CKAP2-202ENST00000378034 SP8Q8IXZ3 490 aa16.66■□□□□ 0.26
CKAP2-202ENST00000378034 RTKN2Q8IZC4 609 aa16.66■□□□□ 0.26
CKAP2-202ENST00000378034 CDC5LQ99459 802 aaKnown RBP16.66■□□□□ 0.26
CKAP2-202ENST00000378034 FER1L6Q2WGJ9 1857 aa16.66■□□□□ 0.26
CKAP2-202ENST00000378034 SUCLG2Q96I99 432 aa16.65■□□□□ 0.26
CKAP2-202ENST00000378034 GREM2Q9H772 168 aa16.65■□□□□ 0.26
CKAP2-202ENST00000378034 ZNF219Q9P2Y4 722 aaPredicted RBP16.65■□□□□ 0.26
CKAP2-202ENST00000378034 TNNQ9UQP3 1299 aa16.65■□□□□ 0.26
CKAP2-202ENST00000378034 TAF1P21675 1872 aa16.65■□□□□ 0.26
CKAP2-202ENST00000378034 GNAI3P08754 354 aa16.64■□□□□ 0.25
CKAP2-202ENST00000378034 UBTFL1P0CB47 393 aaPredicted RBP16.64■□□□□ 0.25
CKAP2-202ENST00000378034 TMEM57Q8N5G2 664 aa16.64■□□□□ 0.25
CKAP2-202ENST00000378034 CELF1Q92879 486 aaKnown RBP16.64■□□□□ 0.25
CKAP2-202ENST00000378034 SEC31BQ9NQW1 1179 aa16.64■□□□□ 0.25
CKAP2-202ENST00000378034 LTBP3Q9NS15 1303 aa16.64■□□□□ 0.25
CKAP2-202ENST00000378034 ANKRD18AQ8IVF6 992 aa16.64■□□□□ 0.25
CKAP2-202ENST00000378034 KAZALD1Q96I82 304 aa16.64■□□□□ 0.25
CKAP2-202ENST00000378034 CCDC85AQ96PX6 553 aaPredicted RBP16.64■□□□□ 0.25
CKAP2-202ENST00000378034 RABL6Q3YEC7 729 aaPredicted RBP16.63■□□□□ 0.25
CKAP2-202ENST00000378034 EPHA10Q5JZY3 1008 aa16.63■□□□□ 0.25
CKAP2-202ENST00000378034 LMBR1LQ6UX01 489 aa16.63■□□□□ 0.25
CKAP2-202ENST00000378034 LRRC37AA6NMS7 1700 aa16.63■□□□□ 0.25
CKAP2-202ENST00000378034 ANKRD18BA2A2Z9 1011 aa16.62■□□□□ 0.25
CKAP2-202ENST00000378034 ITGA6P23229 1130 aa16.62■□□□□ 0.25
CKAP2-202ENST00000378034 SNED1Q8TER0 1413 aa16.62■□□□□ 0.25
CKAP2-202ENST00000378034 NFKBIEO00221 500 aa16.62■□□□□ 0.25
CKAP2-202ENST00000378034 IFIT5Q13325 482 aaKnown RBP16.62■□□□□ 0.25
CKAP2-202ENST00000378034 FAM161AQ3B820 660 aa16.62■□□□□ 0.25
CKAP2-202ENST00000378034 PSMD1Q99460 953 aa16.62■□□□□ 0.25
CKAP2-202ENST00000378034 TAOK3Q9H2K8 898 aa16.62■□□□□ 0.25
CKAP2-202ENST00000378034 RLBP1P12271 317 aa16.61■□□□□ 0.25
CKAP2-202ENST00000378034 FKBP4Q02790 459 aaKnown RBP eCLIP16.61■□□□□ 0.25
CKAP2-202ENST00000378034 PDE3AQ14432 1141 aa16.61■□□□□ 0.25
CKAP2-202ENST00000378034 MEIS3Q99687 375 aa16.61■□□□□ 0.25
CKAP2-202ENST00000378034 BICC1Q9H694 974 aaKnown RBP16.61■□□□□ 0.25
CKAP2-202ENST00000378034 GOLGB1Q14789 3259 aaKnown RBP16.61■□□□□ 0.25
CKAP2-202ENST00000378034 SBF1O95248 1867 aa16.61■□□□□ 0.25
CKAP2-202ENST00000378034 IGHMBP2P38935 993 aaKnown RBP16.6■□□□□ 0.25
CKAP2-202ENST00000378034 CCDC57Q2TAC2 916 aa16.6■□□□□ 0.25
CKAP2-202ENST00000378034 BSDC1Q9NW68 430 aaPredicted RBP16.6■□□□□ 0.25
CKAP2-202ENST00000378034 CHMP3Q9Y3E7 222 aa16.6■□□□□ 0.25
CKAP2-202ENST00000378034 COL4A1P02462 1669 aa16.6■□□□□ 0.25
CKAP2-202ENST00000378034 LMNB1P20700 586 aa16.6■□□□□ 0.25
CKAP2-202ENST00000378034 OLFM4Q6UX06 510 aa16.6■□□□□ 0.25
CKAP2-202ENST00000378034 ITPRIPQ8IWB1 547 aa16.6■□□□□ 0.25
CKAP2-202ENST00000378034 ANKRD44Q8N8A2 993 aa16.6■□□□□ 0.25
CKAP2-202ENST00000378034 MPNDQ8N594 471 aa16.59■□□□□ 0.25
CKAP2-202ENST00000378034 SUPT20HQ8NEM7 779 aa16.59■□□□□ 0.25
CKAP2-202ENST00000378034 PANK1Q8TE04 598 aa16.59■□□□□ 0.25
CKAP2-202ENST00000378034 VPS33BQ9H267 617 aa16.59■□□□□ 0.25
CKAP2-202ENST00000378034 PLIN1O60240 522 aa16.58■□□□□ 0.25
CKAP2-202ENST00000378034 RASSF7Q02833 373 aa16.58■□□□□ 0.25
CKAP2-202ENST00000378034 MPHOSPH8Q99549 860 aa16.58■□□□□ 0.25
CKAP2-202ENST00000378034 RTFDC1Q9BY42 306 aaPredicted RBP16.58■□□□□ 0.25
CKAP2-202ENST00000378034 LRRFIP2Q9Y608 721 aaKnown RBP16.58■□□□□ 0.25
CKAP2-202ENST00000378034 GNAI2P04899 355 aa16.58■□□□□ 0.24
CKAP2-202ENST00000378034 DPP8Q6V1X1 898 aaPredicted RBP16.58■□□□□ 0.24
CKAP2-202ENST00000378034 CHMP4BQ9H444 224 aaKnown RBP16.58■□□□□ 0.24
CKAP2-202ENST00000378034 SPEF2Q9C093 1822 aa16.57■□□□□ 0.24
CKAP2-202ENST00000378034 ZBTB7BO15156 539 aaPredicted RBP16.57■□□□□ 0.24
CKAP2-202ENST00000378034 MVPQ14764 893 aaKnown RBP16.57■□□□□ 0.24
CKAP2-202ENST00000378034 CCDC88AQ3V6T2 1871 aa16.57■□□□□ 0.24
CKAP2-202ENST00000378034 TAF7LQ5H9L4 462 aa16.57■□□□□ 0.24
CKAP2-202ENST00000378034 PODXL2Q9NZ53 605 aa16.57■□□□□ 0.24
CKAP2-202ENST00000378034 DICER1Q9UPY3 1922 aaKnown RBP16.57■□□□□ 0.24
CKAP2-202ENST00000378034 C9orf131Q5VYM1 1079 aa16.57■□□□□ 0.24
CKAP2-202ENST00000378034 DDX19BQ9UMR2 479 aa16.57■□□□□ 0.24
CKAP2-202ENST00000378034 ZC3H4Q9UPT8 1303 aaKnown RBP16.56■□□□□ 0.24
CKAP2-202ENST00000378034 RNF181Q9P0P0 153 aa16.56■□□□□ 0.24
CKAP2-202ENST00000378034 NSFL1CQ9UNZ2 370 aaKnown RBP16.56■□□□□ 0.24
CKAP2-202ENST00000378034 LTBP1Q14766 1721 aa16.56■□□□□ 0.24
CKAP2-202ENST00000378034 RRP1P56182 461 aaKnown RBP16.55■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 46.8 ms