RNA–Protein interactions for RNA: ENST00000377902.5

GNE-201, Transcript of glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene GNE, Length 2,565 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GNE-201ENST00000377902 ZSCAN25Q6NSZ9 544 aa21.31■■□□□ 1
GNE-201ENST00000377902 CCDC129Q6ZRS4 1044 aa21.31■■□□□ 1
GNE-201ENST00000377902 CCDC144CPQ8IYA2 1237 aa21.31■■□□□ 1
GNE-201ENST00000377902 CLSTN2Q9H4D0 955 aa21.31■■□□□ 1
GNE-201ENST00000377902 COL15A1P39059 1388 aa21.3■■□□□ 1
GNE-201ENST00000377902 ZNF165P49910 485 aa21.3■■□□□ 1
GNE-201ENST00000377902 AKAP4Q5JQC9 854 aa21.3■■□□□ 1
GNE-201ENST00000377902 PLA2G4DQ86XP0 818 aa21.3■■□□□ 1
GNE-201ENST00000377902 ANKRD7Q92527 254 aa21.3■■□□□ 1
GNE-201ENST00000377902 KDM3BQ7LBC6 1761 aa21.3■■□□□ 1
GNE-201ENST00000377902 RNMTO43148 476 aaKnown RBP21.3■■□□□ 1
GNE-201ENST00000377902 MED1Q15648 1581 aaPredicted RBP21.3■■□□□ 1
GNE-201ENST00000377902 NPHP3Q7Z494 1330 aa21.29■■□□□ 1
GNE-201ENST00000377902 CTIFO43310 598 aaKnown RBP21.29■■□□□ 1
GNE-201ENST00000377902 IGSF3O75054 1194 aa21.29■■□□□ 1
GNE-201ENST00000377902 ARID5BQ14865 1188 aa21.29■■□□□ 1
GNE-201ENST00000377902 RNF20Q5VTR2 975 aa21.29■■□□□ 1
GNE-201ENST00000377902 CACTINQ8WUQ7 758 aaKnown RBP21.29■■□□□ 1
GNE-201ENST00000377902 SEC62Q99442 399 aaKnown RBP21.29■■□□□ 1
GNE-201ENST00000377902 FTOQ9C0B1 505 aaKnown RBP eCLIP21.29■■□□□ 1
GNE-201ENST00000377902 RGPD2P0DJD1 1756 aa21.29■■□□□ 1
GNE-201ENST00000377902 EPHA10Q5JZY3 1008 aa21.29■■□□□ 1
GNE-201ENST00000377902 BRF1Q92994 677 aa21.29■■□□□ 1
GNE-201ENST00000377902 HIP1O00291 1037 aa21.28■■□□□ 1
GNE-201ENST00000377902 TAF5LO75529 589 aa21.28■■□□□ 1
GNE-201ENST00000377902 ANKRD1Q15327 319 aa21.28■■□□□ 1
GNE-201ENST00000377902 MED23Q9ULK4 1368 aa21.28■■□□□ 1
GNE-201ENST00000377902 IGKV5-2P06315 115 aa21.28■■□□□ 1
GNE-201ENST00000377902 DDX19AQ9NUU7 478 aaKnown RBP21.28■■□□□ 1
GNE-201ENST00000377902 PXDNQ92626 1479 aa21.28■■□□□ 1
GNE-201ENST00000377902 LTN1O94822 1766 aa21.28■■□□□ 1
GNE-201ENST00000377902 RBM43Q6ZSC3 357 aaKnown RBP21.27■■□□□ 1
GNE-201ENST00000377902 LINS1Q8NG48 757 aa21.27■■□□□ 1
GNE-201ENST00000377902 SNRKQ9NRH2 765 aa21.27■■□□□ 1
GNE-201ENST00000377902 CLIP2Q9UDT6 1046 aa21.27■■□□□ 1
GNE-201ENST00000377902 CCDC9Q9Y3X0 531 aaKnown RBP21.27■■□□□ 1
GNE-201ENST00000377902 TNNT1P13805 278 aa21.27■□□□□ 0.99
GNE-201ENST00000377902 NCBP1Q09161 790 aaKnown RBP21.27■□□□□ 0.99
GNE-201ENST00000377902 MYL6BP14649 208 aa21.26■□□□□ 0.99
GNE-201ENST00000377902 Q6ZUG5 572 aa21.26■□□□□ 0.99
GNE-201ENST00000377902 TDRD7Q8NHU6 1098 aaKnown RBP21.26■□□□□ 0.99
GNE-201ENST00000377902 HSP90B1P14625 803 aaKnown RBP21.26■□□□□ 0.99
GNE-201ENST00000377902 RESTQ13127 1097 aa21.26■□□□□ 0.99
GNE-201ENST00000377902 SLFNL1Q499Z3 407 aa21.26■□□□□ 0.99
GNE-201ENST00000377902 PLEKHO1Q53GL0 409 aaPredicted RBP21.26■□□□□ 0.99
GNE-201ENST00000377902 KLHL34Q8N239 644 aa21.26■□□□□ 0.99
GNE-201ENST00000377902 C1orf141Q5JVX7 400 aa21.25■□□□□ 0.99
GNE-201ENST00000377902 C11orf57Q6ZUT1 292 aaPredicted RBP21.25■□□□□ 0.99
GNE-201ENST00000377902 GTF3C6Q969F1 213 aa21.25■□□□□ 0.99
GNE-201ENST00000377902 PHF8Q9UPP1 1060 aa21.25■□□□□ 0.99
GNE-201ENST00000377902 PIP4K2AP48426 406 aaPredicted RBP21.25■□□□□ 0.99
GNE-201ENST00000377902 SLC39A6Q13433 755 aa21.25■□□□□ 0.99
GNE-201ENST00000377902 ZNF592Q92610 1267 aa21.25■□□□□ 0.99
GNE-201ENST00000377902 ERCC4Q92889 916 aaPredicted RBP21.25■□□□□ 0.99
GNE-201ENST00000377902 CHD2O14647 1828 aaKnown RBP21.24■□□□□ 0.99
GNE-201ENST00000377902 PDIA6Q15084 440 aa21.24■□□□□ 0.99
GNE-201ENST00000377902 RIC3Q7Z5B4 369 aa21.24■□□□□ 0.99
GNE-201ENST00000377902 USP27XA6NNY8 438 aa21.24■□□□□ 0.99
GNE-201ENST00000377902 H3BQV1 296 aa21.24■□□□□ 0.99
GNE-201ENST00000377902 IFFO2Q5TF58 517 aa21.24■□□□□ 0.99
GNE-201ENST00000377902 NEK1Q96PY6 1258 aa21.24■□□□□ 0.99
GNE-201ENST00000377902 FBXW7Q969H0 707 aa21.23■□□□□ 0.99
GNE-201ENST00000377902 DBNLQ9UJU6 430 aaKnown RBP21.23■□□□□ 0.99
GNE-201ENST00000377902 USP16Q9Y5T5 823 aa21.23■□□□□ 0.99
GNE-201ENST00000377902 SCRN1Q12765 414 aa21.23■□□□□ 0.99
GNE-201ENST00000377902 TPD52L1Q16890 204 aaPredicted RBP21.23■□□□□ 0.99
GNE-201ENST00000377902 DNAJC2Q99543 621 aaKnown RBP21.23■□□□□ 0.99
GNE-201ENST00000377902 CHMP4AQ9BY43 222 aa21.22■□□□□ 0.99
GNE-201ENST00000377902 ALDH8A1Q9H2A2 487 aaPredicted RBP21.22■□□□□ 0.99
GNE-201ENST00000377902 CYP21A2P08686 494 aa21.22■□□□□ 0.99
GNE-201ENST00000377902 UTYO14607 1347 aa21.21■□□□□ 0.99
GNE-201ENST00000377902 UTP14CQ5TAP6 766 aaKnown RBP21.21■□□□□ 0.99
GNE-201ENST00000377902 GOLPH3LQ9H4A5 285 aa21.21■□□□□ 0.99
GNE-201ENST00000377902 ANKARQ7Z5J8 1434 aa21.21■□□□□ 0.99
GNE-201ENST00000377902 TFCP2Q12800 502 aa21.21■□□□□ 0.99
GNE-201ENST00000377902 IQCB1Q15051 598 aa21.21■□□□□ 0.99
GNE-201ENST00000377902 TSGA10IPQ3SY00 556 aa21.21■□□□□ 0.99
GNE-201ENST00000377902 HMG20BQ9P0W2 317 aa21.21■□□□□ 0.99
GNE-201ENST00000377902 PSME1Q06323 249 aa21.2■□□□□ 0.98
GNE-201ENST00000377902 USPL1Q5W0Q7 1092 aa21.2■□□□□ 0.98
GNE-201ENST00000377902 MYD88Q99836 296 aa21.2■□□□□ 0.98
GNE-201ENST00000377902 A0A0G2JLW4 131 aa21.2■□□□□ 0.98
GNE-201ENST00000377902 PDIA4P13667 645 aaKnown RBP21.2■□□□□ 0.98
GNE-201ENST00000377902 ADD1P35611 737 aaKnown RBP21.2■□□□□ 0.98
GNE-201ENST00000377902 STOX1Q6ZVD7 989 aa21.2■□□□□ 0.98
GNE-201ENST00000377902 DDX46Q7L014 1031 aaKnown RBP21.2■□□□□ 0.98
GNE-201ENST00000377902 DDX21Q9NR30 783 aaKnown RBP eCLIP21.2■□□□□ 0.98
GNE-201ENST00000377902 HEG1Q9ULI3 1381 aa21.19■□□□□ 0.98
GNE-201ENST00000377902 NEURL1BA8MQ27 555 aa21.19■□□□□ 0.98
GNE-201ENST00000377902 SMTNL1A8MU46 457 aa21.19■□□□□ 0.98
GNE-201ENST00000377902 HDAC5Q9UQL6 1122 aa21.19■□□□□ 0.98
GNE-201ENST00000377902 GUCY1B3Q02153 619 aa21.19■□□□□ 0.98
GNE-201ENST00000377902 ESCO1Q5FWF5 840 aa21.19■□□□□ 0.98
GNE-201ENST00000377902 ARHGAP30Q7Z6I6 1101 aaPredicted RBP21.19■□□□□ 0.98
GNE-201ENST00000377902 LRRC8AQ8IWT6 810 aa21.19■□□□□ 0.98
GNE-201ENST00000377902 CCAR1Q8IX12 1150 aaKnown RBP21.19■□□□□ 0.98
GNE-201ENST00000377902 ZNF609O15014 1411 aa21.19■□□□□ 0.98
GNE-201ENST00000377902 JCADQ9P266 1359 aa21.18■□□□□ 0.98
GNE-201ENST00000377902 DDX58O95786 925 aaKnown RBP21.18■□□□□ 0.98
GNE-201ENST00000377902 CCT2P78371 535 aaKnown RBP21.18■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms