RNA–Protein interactions for RNA: ENST00000376636.7

VPS13A-205, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 11,145 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-205ENST00000376636 LIMCH1Q9UPQ0 1083 aa13.22□□□□□ -0.29
VPS13A-205ENST00000376636 UBA7P41226 1012 aa13.22□□□□□ -0.29
VPS13A-205ENST00000376636 N4BP3O15049 544 aa13.22□□□□□ -0.29
VPS13A-205ENST00000376636 ZEB2O60315 1214 aa13.22□□□□□ -0.29
VPS13A-205ENST00000376636 CCDC102BQ68D86 513 aa13.22□□□□□ -0.29
VPS13A-205ENST00000376636 VCX3AQ9NNX9 186 aa13.22□□□□□ -0.29
VPS13A-205ENST00000376636 ABCF2Q9UG63 623 aa13.22□□□□□ -0.29
VPS13A-205ENST00000376636 MX1P20591 662 aa13.22□□□□□ -0.29
VPS13A-205ENST00000376636 GEN1Q17RS7 908 aa13.22□□□□□ -0.29
VPS13A-205ENST00000376636 FERMT3Q86UX7 667 aa13.22□□□□□ -0.29
VPS13A-205ENST00000376636 CCDC82Q8N4S0 544 aa13.22□□□□□ -0.29
VPS13A-205ENST00000376636 SAMM50Q9Y512 469 aa13.22□□□□□ -0.29
VPS13A-205ENST00000376636 RPAP2Q8IXW5 612 aaPredicted RBP13.22□□□□□ -0.29
VPS13A-205ENST00000376636 TSPYL2Q9H2G4 693 aaPredicted RBP13.22□□□□□ -0.29
VPS13A-205ENST00000376636 NKIRAS1Q9NYS0 192 aa13.22□□□□□ -0.29
VPS13A-205ENST00000376636 CHMP4BP1P59074 171 aa13.21□□□□□ -0.29
VPS13A-205ENST00000376636 C10orf67Q8IYJ2 551 aa13.21□□□□□ -0.29
VPS13A-205ENST00000376636 WHAMMQ8TF30 809 aa13.21□□□□□ -0.29
VPS13A-205ENST00000376636 SPAG1Q07617 926 aa13.21□□□□□ -0.29
VPS13A-205ENST00000376636 ZNF444Q8N0Y2 327 aaPredicted RBP13.21□□□□□ -0.29
VPS13A-205ENST00000376636 DHX29Q7Z478 1369 aaKnown RBP13.21□□□□□ -0.29
VPS13A-205ENST00000376636 CCDC62Q6P9F0 684 aa13.21□□□□□ -0.29
VPS13A-205ENST00000376636 MINDY4BA8MYZ0 360 aa13.21□□□□□ -0.29
VPS13A-205ENST00000376636 ZSWIM4Q9H7M6 989 aa13.21□□□□□ -0.29
VPS13A-205ENST00000376636 SUPT6HQ7KZ85 1726 aaKnown RBP13.21□□□□□ -0.29
VPS13A-205ENST00000376636 KIF21BO75037 1637 aa13.21□□□□□ -0.29
VPS13A-205ENST00000376636 HDXQ7Z353 690 aa13.21□□□□□ -0.29
VPS13A-205ENST00000376636 ZNF213O14771 459 aa13.21□□□□□ -0.3
VPS13A-205ENST00000376636 VPS18Q9P253 973 aa13.21□□□□□ -0.3
VPS13A-205ENST00000376636 HVCN1Q96D96 273 aa13.21□□□□□ -0.3
VPS13A-205ENST00000376636 BTBD11A6QL63 1104 aa13.21□□□□□ -0.3
VPS13A-205ENST00000376636 RSPH3Q86UC2 560 aa13.21□□□□□ -0.3
VPS13A-205ENST00000376636 CCDC94Q9BW85 323 aaPredicted RBP13.21□□□□□ -0.3
VPS13A-205ENST00000376636 MTUS1Q9ULD2 1270 aa13.21□□□□□ -0.3
VPS13A-205ENST00000376636 ERCC3P19447 782 aa13.2□□□□□ -0.3
VPS13A-205ENST00000376636 ANKRD24Q8TF21 1146 aa13.2□□□□□ -0.3
VPS13A-205ENST00000376636 INF2Q27J81 1249 aa13.2□□□□□ -0.3
VPS13A-205ENST00000376636 CACYBPQ9HB71 228 aaKnown RBP13.2□□□□□ -0.3
VPS13A-205ENST00000376636 CLUL1Q15846 466 aa13.2□□□□□ -0.3
VPS13A-205ENST00000376636 HDAC9Q9UKV0 1011 aa13.2□□□□□ -0.3
VPS13A-205ENST00000376636 CSRNP2Q9H175 543 aa13.2□□□□□ -0.3
VPS13A-205ENST00000376636 FAM169AQ9Y6X4 670 aa13.2□□□□□ -0.3
VPS13A-205ENST00000376636 IRX4P78413 519 aa13.2□□□□□ -0.3
VPS13A-205ENST00000376636 TTF1Q15361 905 aaPredicted RBP13.2□□□□□ -0.3
VPS13A-205ENST00000376636 PPP1R7Q15435 360 aa13.2□□□□□ -0.3
VPS13A-205ENST00000376636 WHAMMP3Q1A5X7 153 aa13.2□□□□□ -0.3
VPS13A-205ENST00000376636 METTL24Q5JXM2 366 aa13.2□□□□□ -0.3
VPS13A-205ENST00000376636 SDCCAG8Q86SQ7 713 aaPredicted RBP13.2□□□□□ -0.3
VPS13A-205ENST00000376636 GGNBP2Q9H3C7 697 aa13.19□□□□□ -0.3
VPS13A-205ENST00000376636 ANKIB1Q9P2G1 1089 aa13.19□□□□□ -0.3
VPS13A-205ENST00000376636 VIMP08670 466 aaKnown RBP13.19□□□□□ -0.3
VPS13A-205ENST00000376636 ZNF365Q70YC5 407 aa13.19□□□□□ -0.3
VPS13A-205ENST00000376636 TAOK1Q7L7X3 1001 aa13.19□□□□□ -0.3
VPS13A-205ENST00000376636 DDX27Q96GQ7 796 aaKnown RBP13.19□□□□□ -0.3
VPS13A-205ENST00000376636 PDE4BQ07343 736 aa13.19□□□□□ -0.3
VPS13A-205ENST00000376636 BCAP29Q9UHQ4 241 aa13.19□□□□□ -0.3
VPS13A-205ENST00000376636 GKAP1Q5VSY0 366 aaPredicted RBP13.19□□□□□ -0.3
VPS13A-205ENST00000376636 MAK16Q9BXY0 300 aaKnown RBP13.19□□□□□ -0.3
VPS13A-205ENST00000376636 PDE1CQ14123 709 aaPredicted RBP13.19□□□□□ -0.3
VPS13A-205ENST00000376636 ATP6V0A2Q9Y487 856 aa13.19□□□□□ -0.3
VPS13A-205ENST00000376636 FCHSD2O94868 740 aa13.19□□□□□ -0.3
VPS13A-205ENST00000376636 STAT6P42226 847 aa13.19□□□□□ -0.3
VPS13A-205ENST00000376636 BCAR3O75815 825 aa13.19□□□□□ -0.3
VPS13A-205ENST00000376636 ARHGAP25P42331 645 aa13.19□□□□□ -0.3
VPS13A-205ENST00000376636 TNNC1P63316 161 aa13.19□□□□□ -0.3
VPS13A-205ENST00000376636 MCUR1Q96AQ8 359 aa13.19□□□□□ -0.3
VPS13A-205ENST00000376636 CETN3O15182 167 aa13.18□□□□□ -0.3
VPS13A-205ENST00000376636 CALCOCO2Q13137 446 aa13.18□□□□□ -0.3
VPS13A-205ENST00000376636 PRPF40BQ6NWY9 871 aaKnown RBP13.18□□□□□ -0.3
VPS13A-205ENST00000376636 STARD3NLO95772 234 aa13.18□□□□□ -0.3
VPS13A-205ENST00000376636 GIPC1O14908 333 aa13.18□□□□□ -0.3
VPS13A-205ENST00000376636 IDEP14735 1019 aa13.18□□□□□ -0.3
VPS13A-205ENST00000376636 TTC16Q8NEE8 873 aa13.18□□□□□ -0.3
VPS13A-205ENST00000376636 RANBP6O60518 1105 aaKnown RBP13.18□□□□□ -0.3
VPS13A-205ENST00000376636 GIGYF1O75420 1035 aaPredicted RBP13.18□□□□□ -0.3
VPS13A-205ENST00000376636 IFIT1P09914 478 aaKnown RBP13.18□□□□□ -0.3
VPS13A-205ENST00000376636 PPP1R12CQ9BZL4 782 aa13.18□□□□□ -0.3
VPS13A-205ENST00000376636 SBDSQ9Y3A5 250 aaKnown RBP eCLIP13.18□□□□□ -0.3
VPS13A-205ENST00000376636 RASSF2P50749 326 aa13.18□□□□□ -0.3
VPS13A-205ENST00000376636 NKTRP30414 1462 aaKnown RBP13.18□□□□□ -0.3
VPS13A-205ENST00000376636 HSPA1LP34931 641 aa13.18□□□□□ -0.3
VPS13A-205ENST00000376636 HAUS2Q9NVX0 235 aa13.18□□□□□ -0.3
VPS13A-205ENST00000376636 SKILP12757 684 aa13.17□□□□□ -0.3
VPS13A-205ENST00000376636 CLNS1AP54105 237 aaKnown RBP13.17□□□□□ -0.3
VPS13A-205ENST00000376636 CCDC38Q502W7 563 aa13.17□□□□□ -0.3
VPS13A-205ENST00000376636 BICDL1Q6ZP65 573 aa13.17□□□□□ -0.3
VPS13A-205ENST00000376636 PHACTR2O75167 634 aa13.17□□□□□ -0.3
VPS13A-205ENST00000376636 ANKRD30BQ9BXX2 1392 aa13.17□□□□□ -0.3
VPS13A-205ENST00000376636 KCNK9Q9NPC2 374 aa13.17□□□□□ -0.3
VPS13A-205ENST00000376636 KCNG4Q8TDN1 519 aa13.17□□□□□ -0.3
VPS13A-205ENST00000376636 TRAF3IP1Q8TDR0 691 aaPredicted RBP13.17□□□□□ -0.3
VPS13A-205ENST00000376636 HMG20BQ9P0W2 317 aa13.17□□□□□ -0.3
VPS13A-205ENST00000376636 NUTM2GQ5VZR2 741 aa13.17□□□□□ -0.3
VPS13A-205ENST00000376636 BICDL2A1A5D9 508 aa13.17□□□□□ -0.3
VPS13A-205ENST00000376636 BIN1O00499 593 aa13.17□□□□□ -0.3
VPS13A-205ENST00000376636 EEF2P13639 858 aaKnown RBP13.17□□□□□ -0.3
VPS13A-205ENST00000376636 PLCB3Q01970 1234 aa13.17□□□□□ -0.3
VPS13A-205ENST00000376636 SRGAP1Q7Z6B7 1085 aa13.17□□□□□ -0.3
VPS13A-205ENST00000376636 SPINK5Q9NQ38 1064 aaPredicted RBP13.17□□□□□ -0.3
VPS13A-205ENST00000376636 TRAF1Q13077 416 aa13.17□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms