RNA–Protein interactions for RNA: ENST00000375405.7

SCN1A-202, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,097 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-202ENST00000375405 KANK3Q6NY19 840 aa5.27□□□□□ -1.57
SCN1A-202ENST00000375405 RPGRQ92834 1020 aaKnown RBP5.27□□□□□ -1.57
SCN1A-202ENST00000375405 NSRP1Q9H0G5 558 aaKnown RBP5.27□□□□□ -1.57
SCN1A-202ENST00000375405 USP25Q9UHP3 1055 aa5.27□□□□□ -1.57
SCN1A-202ENST00000375405 DAAM1Q9Y4D1 1078 aa5.27□□□□□ -1.57
SCN1A-202ENST00000375405 E7EVH7 732 aa5.27□□□□□ -1.57
SCN1A-202ENST00000375405 SLC8A3P57103 927 aa5.27□□□□□ -1.57
SCN1A-202ENST00000375405 C1orf228Q6PIY5 440 aa5.27□□□□□ -1.57
SCN1A-202ENST00000375405 PPP1R14AQ96A00 147 aa5.27□□□□□ -1.57
SCN1A-202ENST00000375405 NINLQ9Y2I6 1382 aa5.27□□□□□ -1.57
SCN1A-202ENST00000375405 TACC1O75410 805 aa5.27□□□□□ -1.57
SCN1A-202ENST00000375405 SDCCAG8Q86SQ7 713 aaPredicted RBP5.27□□□□□ -1.57
SCN1A-202ENST00000375405 TTC21AQ8NDW8 1320 aa5.27□□□□□ -1.57
SCN1A-202ENST00000375405 POTEB3A0JP26 581 aa5.27□□□□□ -1.57
SCN1A-202ENST00000375405 RCSD1Q6JBY9 416 aa5.27□□□□□ -1.57
SCN1A-202ENST00000375405 POTEBQ6S5H4 581 aa5.27□□□□□ -1.57
SCN1A-202ENST00000375405 RUFY3Q7L099 469 aa5.27□□□□□ -1.57
SCN1A-202ENST00000375405 ZSCAN21Q9Y5A6 473 aaPredicted RBP5.27□□□□□ -1.57
SCN1A-202ENST00000375405 ATP2A2P16615 1042 aaKnown RBP5.26□□□□□ -1.57
SCN1A-202ENST00000375405 PSMD2Q13200 908 aa5.26□□□□□ -1.57
SCN1A-202ENST00000375405 BTN2A2Q8WVV5 523 aa5.26□□□□□ -1.57
SCN1A-202ENST00000375405 EVI5LQ96CN4 794 aa5.26□□□□□ -1.57
SCN1A-202ENST00000375405 TSPYL2Q9H2G4 693 aaPredicted RBP5.26□□□□□ -1.57
SCN1A-202ENST00000375405 ZSCAN16Q9H4T2 348 aaPredicted RBP5.26□□□□□ -1.57
SCN1A-202ENST00000375405 MINDY4BA8MYZ0 360 aa5.26□□□□□ -1.57
SCN1A-202ENST00000375405 APOA4P06727 396 aa5.26□□□□□ -1.57
SCN1A-202ENST00000375405 SP4Q02446 784 aa5.26□□□□□ -1.57
SCN1A-202ENST00000375405 MCM6Q14566 821 aa5.26□□□□□ -1.57
SCN1A-202ENST00000375405 FMNL3Q8IVF7 1028 aa5.26□□□□□ -1.57
SCN1A-202ENST00000375405 DIAPH2O60879 1101 aa5.26□□□□□ -1.57
SCN1A-202ENST00000375405 OATP04181 439 aa5.26□□□□□ -1.57
SCN1A-202ENST00000375405 FOSL2P15408 326 aa5.26□□□□□ -1.57
SCN1A-202ENST00000375405 VPS41P49754 854 aa5.26□□□□□ -1.57
SCN1A-202ENST00000375405 TRIM14Q14142 442 aa5.26□□□□□ -1.57
SCN1A-202ENST00000375405 SMARCC1Q92922 1105 aaPredicted RBP5.26□□□□□ -1.57
SCN1A-202ENST00000375405 CCDC85AQ96PX6 553 aaPredicted RBP5.26□□□□□ -1.57
SCN1A-202ENST00000375405 SRPK1Q96SB4 655 aaKnown RBP5.26□□□□□ -1.57
SCN1A-202ENST00000375405 VAT1LQ9HCJ6 419 aa5.26□□□□□ -1.57
SCN1A-202ENST00000375405 SEC24BO95487 1268 aa5.26□□□□□ -1.57
SCN1A-202ENST00000375405 MBD3O95983 291 aa5.26□□□□□ -1.57
SCN1A-202ENST00000375405 CTAGE8P0CG41 777 aa5.26□□□□□ -1.57
SCN1A-202ENST00000375405 RRP1P56182 461 aaKnown RBP5.26□□□□□ -1.57
SCN1A-202ENST00000375405 MAP7Q14244 749 aa5.26□□□□□ -1.57
SCN1A-202ENST00000375405 CTAGE4Q8IX94 777 aa5.26□□□□□ -1.57
SCN1A-202ENST00000375405 KCTD17Q8N5Z5 321 aa5.26□□□□□ -1.57
SCN1A-202ENST00000375405 NSMCE1Q8WV22 266 aa5.26□□□□□ -1.57
SCN1A-202ENST00000375405 POMGNT1Q8WZA1 660 aa5.26□□□□□ -1.57
SCN1A-202ENST00000375405 AIDAQ96BJ3 306 aa5.26□□□□□ -1.57
SCN1A-202ENST00000375405 ZNF287Q9HBT7 754 aa5.26□□□□□ -1.57
SCN1A-202ENST00000375405 MOSPD1Q9UJG1 213 aa5.26□□□□□ -1.57
SCN1A-202ENST00000375405 SZRD1Q7Z422 152 aa5.26□□□□□ -1.57
SCN1A-202ENST00000375405 CLIP2Q9UDT6 1046 aa5.26□□□□□ -1.57
SCN1A-202ENST00000375405 C11orf95C9JLR9 678 aaPredicted RBP5.25□□□□□ -1.57
SCN1A-202ENST00000375405 MAP3K7O43318 606 aa5.25□□□□□ -1.57
SCN1A-202ENST00000375405 SERPINI2O75830 405 aa5.25□□□□□ -1.57
SCN1A-202ENST00000375405 DDX12PQ92771 950 aa5.25□□□□□ -1.57
SCN1A-202ENST00000375405 IMPG2Q9BZV3 1241 aa5.25□□□□□ -1.57
SCN1A-202ENST00000375405 SIL1Q9H173 461 aa5.25□□□□□ -1.57
SCN1A-202ENST00000375405 JADE2Q9NQC1 790 aa5.25□□□□□ -1.57
SCN1A-202ENST00000375405 SCHIP1Q9P0W5 487 aaPredicted RBP5.25□□□□□ -1.57
SCN1A-202ENST00000375405 TEKT2Q9UIF3 430 aa5.25□□□□□ -1.57
SCN1A-202ENST00000375405 ERCC6Q03468 1493 aa5.25□□□□□ -1.57
SCN1A-202ENST00000375405 SART1O43290 800 aaKnown RBP5.25□□□□□ -1.57
SCN1A-202ENST00000375405 DNAJC3Q13217 504 aa5.25□□□□□ -1.57
SCN1A-202ENST00000375405 KIAA0753Q2KHM9 967 aa5.25□□□□□ -1.57
SCN1A-202ENST00000375405 CAVIN1Q6NZI2 390 aaKnown RBP5.25□□□□□ -1.57
SCN1A-202ENST00000375405 CNTROBQ8N137 903 aa5.25□□□□□ -1.57
SCN1A-202ENST00000375405 CCDC155Q8N6L0 562 aa5.25□□□□□ -1.57
SCN1A-202ENST00000375405 HAUS2Q9NVX0 235 aa5.25□□□□□ -1.57
SCN1A-202ENST00000375405 HYPKQ9NX55 129 aa5.25□□□□□ -1.57
SCN1A-202ENST00000375405 CASP2P42575 452 aa5.25□□□□□ -1.57
SCN1A-202ENST00000375405 ZC3H6P61129 1189 aaKnown RBP5.25□□□□□ -1.57
SCN1A-202ENST00000375405 NBPF20Q3BBV1 942 aa5.25□□□□□ -1.57
SCN1A-202ENST00000375405 RINLQ6ZS11 566 aa5.25□□□□□ -1.57
SCN1A-202ENST00000375405 LEO1Q8WVC0 666 aaPredicted RBP5.25□□□□□ -1.57
SCN1A-202ENST00000375405 CCDC196A0A1B0GTZ2 297 aa5.25□□□□□ -1.57
SCN1A-202ENST00000375405 TRAK2O60296 914 aa5.25□□□□□ -1.57
SCN1A-202ENST00000375405 RAB11FIP3O75154 756 aa5.25□□□□□ -1.57
SCN1A-202ENST00000375405 TOM1L2Q6ZVM7 507 aa5.25□□□□□ -1.57
SCN1A-202ENST00000375405 PPHLN1Q8NEY8 458 aaKnown RBP5.25□□□□□ -1.57
SCN1A-202ENST00000375405 FGFR1OPO95684 399 aaKnown RBP5.25□□□□□ -1.57
SCN1A-202ENST00000375405 PNMA8AQ86V59 439 aaPredicted RBP5.25□□□□□ -1.57
SCN1A-202ENST00000375405 HVCN1Q96D96 273 aa5.25□□□□□ -1.57
SCN1A-202ENST00000375405 CEP131Q9UPN4 1083 aa5.25□□□□□ -1.57
SCN1A-202ENST00000375405 SMIM23A6NLE4 172 aa5.25□□□□□ -1.57
SCN1A-202ENST00000375405 C6orf229H3BNL8 230 aa5.25□□□□□ -1.57
SCN1A-202ENST00000375405 BAG4O95429 457 aaKnown RBP5.25□□□□□ -1.57
SCN1A-202ENST00000375405 MYL6BP14649 208 aa5.25□□□□□ -1.57
SCN1A-202ENST00000375405 PHEXP78562 749 aa5.25□□□□□ -1.57
SCN1A-202ENST00000375405 SKOR1P84550 965 aa5.25□□□□□ -1.57
SCN1A-202ENST00000375405 FAM160A1Q05DH4 1040 aa5.25□□□□□ -1.57
SCN1A-202ENST00000375405 TMEM266Q2M3C6 531 aa5.25□□□□□ -1.57
SCN1A-202ENST00000375405 GKAP1Q5VSY0 366 aaPredicted RBP5.25□□□□□ -1.57
SCN1A-202ENST00000375405 TBC1D5Q92609 795 aa5.25□□□□□ -1.57
SCN1A-202ENST00000375405 FAM167BQ9BTA0 163 aa5.25□□□□□ -1.57
SCN1A-202ENST00000375405 NUCKS1Q9H1E3 243 aaKnown RBP5.25□□□□□ -1.57
SCN1A-202ENST00000375405 TSPYL4Q9UJ04 414 aa5.25□□□□□ -1.57
SCN1A-202ENST00000375405 CDV3Q9UKY7 258 aaKnown RBP5.25□□□□□ -1.57
SCN1A-202ENST00000375405 KRT13P13646 458 aa5.25□□□□□ -1.57
SCN1A-202ENST00000375405 MTIF2P46199 727 aaKnown RBP5.25□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms