RNA–Protein interactions for RNA: ENST00000374116.3

HMGA1-203, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,848 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-203ENST00000374116 GCKRQ14397 625 aa17.6■□□□□ 0.41
HMGA1-203ENST00000374116 CCDC191Q8NCU4 936 aa17.6■□□□□ 0.41
HMGA1-203ENST00000374116 NRXN2Q9P2S2 1712 aa17.59■□□□□ 0.41
HMGA1-203ENST00000374116 C3orf67Q6ZVT6 689 aa17.59■□□□□ 0.41
HMGA1-203ENST00000374116 UBE3BQ7Z3V4 1068 aa17.59■□□□□ 0.41
HMGA1-203ENST00000374116 TRIM28Q13263 835 aaKnown RBP17.58■□□□□ 0.41
HMGA1-203ENST00000374116 NLGN2Q8NFZ4 835 aa17.58■□□□□ 0.41
HMGA1-203ENST00000374116 NBPF7P0C2Y1 421 aaPredicted RBP17.58■□□□□ 0.4
HMGA1-203ENST00000374116 CHRNA5P30532 468 aa17.58■□□□□ 0.4
HMGA1-203ENST00000374116 ANKRD31Q8N7Z5 1873 aa17.58■□□□□ 0.4
HMGA1-203ENST00000374116 ANKRD44Q8N8A2 993 aa17.58■□□□□ 0.4
HMGA1-203ENST00000374116 LNPKQ9C0E8 428 aa17.58■□□□□ 0.4
HMGA1-203ENST00000374116 CCT4P50991 539 aaKnown RBP17.57■□□□□ 0.4
HMGA1-203ENST00000374116 ST5P78524 1137 aa17.57■□□□□ 0.4
HMGA1-203ENST00000374116 RPAP2Q8IXW5 612 aaPredicted RBP17.57■□□□□ 0.4
HMGA1-203ENST00000374116 ZBTB38Q8NAP3 1195 aaPredicted RBP17.57■□□□□ 0.4
HMGA1-203ENST00000374116 CCDC85AQ96PX6 553 aaPredicted RBP17.57■□□□□ 0.4
HMGA1-203ENST00000374116 NYXQ9GZU5 481 aa17.57■□□□□ 0.4
HMGA1-203ENST00000374116 SH3TC1Q8TE82 1336 aa17.57■□□□□ 0.4
HMGA1-203ENST00000374116 TNRC6CQ9HCJ0 1690 aaKnown RBP17.57■□□□□ 0.4
HMGA1-203ENST00000374116 A0A0G2JLW4 131 aa17.56■□□□□ 0.4
HMGA1-203ENST00000374116 L1TD1Q5T7N2 865 aaKnown RBP17.56■□□□□ 0.4
HMGA1-203ENST00000374116 ANKRD45Q5TZF3 282 aa17.56■□□□□ 0.4
HMGA1-203ENST00000374116 DCTPP1Q9H773 170 aa17.56■□□□□ 0.4
HMGA1-203ENST00000374116 C9orf78Q9NZ63 289 aaPredicted RBP17.56■□□□□ 0.4
HMGA1-203ENST00000374116 N4BP2Q86UW6 1770 aaPredicted RBP17.56■□□□□ 0.4
HMGA1-203ENST00000374116 IRS4O14654 1257 aaPredicted RBP17.56■□□□□ 0.4
HMGA1-203ENST00000374116 MEIS3Q99687 375 aa17.56■□□□□ 0.4
HMGA1-203ENST00000374116 FRAT2O75474 233 aaPredicted RBP17.55■□□□□ 0.4
HMGA1-203ENST00000374116 BMP2KLQ5H9B9 411 aa17.55■□□□□ 0.4
HMGA1-203ENST00000374116 CEP85Q6P2H3 762 aa17.55■□□□□ 0.4
HMGA1-203ENST00000374116 USP44Q9H0E7 712 aa17.55■□□□□ 0.4
HMGA1-203ENST00000374116 C10orf71Q711Q0 1435 aa17.55■□□□□ 0.4
HMGA1-203ENST00000374116 H7C1W4 665 aa17.54■□□□□ 0.4
HMGA1-203ENST00000374116 GRM8O00222 908 aa17.54■□□□□ 0.4
HMGA1-203ENST00000374116 ALDH1L1O75891 902 aa17.54■□□□□ 0.4
HMGA1-203ENST00000374116 PCCAP05165 728 aaPredicted RBP17.54■□□□□ 0.4
HMGA1-203ENST00000374116 SYT17Q9BSW7 474 aa17.54■□□□□ 0.4
HMGA1-203ENST00000374116 DDX60Q8IY21 1712 aaKnown RBP17.54■□□□□ 0.4
HMGA1-203ENST00000374116 LRP5O75197 1615 aa17.54■□□□□ 0.4
HMGA1-203ENST00000374116 PXDNLA1KZ92 1463 aa17.54■□□□□ 0.4
HMGA1-203ENST00000374116 DPEP1P16444 411 aa17.53■□□□□ 0.4
HMGA1-203ENST00000374116 CASP7P55210 303 aa17.53■□□□□ 0.4
HMGA1-203ENST00000374116 BRIP1Q9BX63 1249 aa17.53■□□□□ 0.4
HMGA1-203ENST00000374116 C22orf23Q9BZE7 217 aa17.53■□□□□ 0.4
HMGA1-203ENST00000374116 EPHA10Q5JZY3 1008 aa17.52■□□□□ 0.4
HMGA1-203ENST00000374116 C2CD5Q86YS7 1000 aa17.52■□□□□ 0.4
HMGA1-203ENST00000374116 TAF1P21675 1872 aa17.52■□□□□ 0.4
HMGA1-203ENST00000374116 KIF13BQ9NQT8 1826 aa17.52■□□□□ 0.39
HMGA1-203ENST00000374116 IBTKQ9P2D0 1353 aaPredicted RBP17.52■□□□□ 0.39
HMGA1-203ENST00000374116 COL11A2P13942 1736 aaPredicted RBP17.52■□□□□ 0.39
HMGA1-203ENST00000374116 RRP9O43818 475 aaKnown RBP17.51■□□□□ 0.39
HMGA1-203ENST00000374116 SLC51AQ86UW1 340 aa17.51■□□□□ 0.39
HMGA1-203ENST00000374116 SUCLG2Q96I99 432 aa17.51■□□□□ 0.39
HMGA1-203ENST00000374116 RRAGDQ9NQL2 400 aaPredicted RBP17.51■□□□□ 0.39
HMGA1-203ENST00000374116 LAMB2P55268 1798 aa17.51■□□□□ 0.39
HMGA1-203ENST00000374116 MFAP1P55081 439 aaKnown RBP17.51■□□□□ 0.39
HMGA1-203ENST00000374116 SLC10A5Q5PT55 438 aa17.51■□□□□ 0.39
HMGA1-203ENST00000374116 ZNF622Q969S3 477 aaKnown RBP eCLIP17.51■□□□□ 0.39
HMGA1-203ENST00000374116 NLRP3Q96P20 1036 aa17.51■□□□□ 0.39
HMGA1-203ENST00000374116 CD2APQ9Y5K6 639 aa17.51■□□□□ 0.39
HMGA1-203ENST00000374116 KCNA3P22001 575 aa17.5■□□□□ 0.39
HMGA1-203ENST00000374116 PDE6BP35913 854 aa17.5■□□□□ 0.39
HMGA1-203ENST00000374116 KAZALD1Q96I82 304 aa17.5■□□□□ 0.39
HMGA1-203ENST00000374116 KIAA1551Q9HCM1 1747 aa17.49■□□□□ 0.39
HMGA1-203ENST00000374116 CACNA1SQ13698 1873 aa17.49■□□□□ 0.39
HMGA1-203ENST00000374116 H0YIN7 160 aa17.49■□□□□ 0.39
HMGA1-203ENST00000374116 PDE8AO60658 829 aa17.49■□□□□ 0.39
HMGA1-203ENST00000374116 SRGNP10124 158 aa17.49■□□□□ 0.39
HMGA1-203ENST00000374116 ZNF219Q9P2Y4 722 aaPredicted RBP17.49■□□□□ 0.39
HMGA1-203ENST00000374116 CHMP3Q9Y3E7 222 aa17.49■□□□□ 0.39
HMGA1-203ENST00000374116 CDHR2Q9BYE9 1310 aa17.49■□□□□ 0.39
HMGA1-203ENST00000374116 COL4A1P02462 1669 aa17.49■□□□□ 0.39
HMGA1-203ENST00000374116 UBTFL1P0CB47 393 aaPredicted RBP17.48■□□□□ 0.39
HMGA1-203ENST00000374116 SEC31BQ9NQW1 1179 aa17.48■□□□□ 0.39
HMGA1-203ENST00000374116 LRRFIP2Q9Y608 721 aaKnown RBP17.48■□□□□ 0.39
HMGA1-203ENST00000374116 FOXO4P98177 505 aa17.47■□□□□ 0.39
HMGA1-203ENST00000374116 BICC1Q9H694 974 aaKnown RBP17.47■□□□□ 0.39
HMGA1-203ENST00000374116 GNAI2P04899 355 aa17.47■□□□□ 0.39
HMGA1-203ENST00000374116 GNAI3P08754 354 aa17.47■□□□□ 0.39
HMGA1-203ENST00000374116 CLCN1P35523 988 aa17.47■□□□□ 0.39
HMGA1-203ENST00000374116 CTSWP56202 376 aa17.47■□□□□ 0.39
HMGA1-203ENST00000374116 TGFB2P61812 414 aa17.47■□□□□ 0.39
HMGA1-203ENST00000374116 TTLL11Q8NHH1 800 aa17.47■□□□□ 0.39
HMGA1-203ENST00000374116 RPGRQ92834 1020 aaKnown RBP17.47■□□□□ 0.39
HMGA1-203ENST00000374116 TBC1D2Q9BYX2 928 aa17.47■□□□□ 0.39
HMGA1-203ENST00000374116 GREM2Q9H772 168 aa17.47■□□□□ 0.39
HMGA1-203ENST00000374116 UTYO14607 1347 aa17.47■□□□□ 0.39
HMGA1-203ENST00000374116 MYH3P11055 1940 aa17.46■□□□□ 0.39
HMGA1-203ENST00000374116 KLRG2A4D1S0 409 aaPredicted RBP17.46■□□□□ 0.39
HMGA1-203ENST00000374116 RBM25P49756 843 aaKnown RBP17.46■□□□□ 0.39
HMGA1-203ENST00000374116 CRY2Q49AN0 593 aa17.46■□□□□ 0.39
HMGA1-203ENST00000374116 LMBR1LQ6UX01 489 aa17.46■□□□□ 0.39
HMGA1-203ENST00000374116 OLFM4Q6UX06 510 aa17.45■□□□□ 0.38
HMGA1-203ENST00000374116 HMMRO75330 724 aa17.44■□□□□ 0.38
HMGA1-203ENST00000374116 PLEKHM2Q8IWE5 1019 aa17.44■□□□□ 0.38
HMGA1-203ENST00000374116 MASTLQ96GX5 879 aa17.44■□□□□ 0.38
HMGA1-203ENST00000374116 SF3B3Q15393 1217 aaKnown RBP17.44■□□□□ 0.38
HMGA1-203ENST00000374116 CELF1Q92879 486 aaKnown RBP17.44■□□□□ 0.38
HMGA1-203ENST00000374116 BCS1LQ9Y276 419 aa17.44■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 152.1 ms