RNA–Protein interactions for RNA: ENST00000368298.2

LMNA-204, Transcript of lamin A/C, humanhuman

TSL 1 (best)

Gene LMNA, Length 1,475 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMNA-204ENST00000368298 MYH3P11055 1940 aa23.61■■□□□ 1.37
LMNA-204ENST00000368298 C9orf78Q9NZ63 289 aaPredicted RBP23.6■■□□□ 1.37
LMNA-204ENST00000368298 USP44Q9H0E7 712 aa23.59■■□□□ 1.37
LMNA-204ENST00000368298 CACNA1SQ13698 1873 aa23.59■■□□□ 1.37
LMNA-204ENST00000368298 CHD4Q14839 1912 aa23.58■■□□□ 1.37
LMNA-204ENST00000368298 CTSWP56202 376 aa23.58■■□□□ 1.37
LMNA-204ENST00000368298 DDX46Q7L014 1031 aaKnown RBP23.58■■□□□ 1.37
LMNA-204ENST00000368298 TTLL11Q8NHH1 800 aa23.58■■□□□ 1.37
LMNA-204ENST00000368298 CSF1RP07333 972 aa23.57■■□□□ 1.36
LMNA-204ENST00000368298 CCDC152Q4G0S7 254 aa23.57■■□□□ 1.36
LMNA-204ENST00000368298 RTL9Q8NET4 1388 aa23.57■■□□□ 1.36
LMNA-204ENST00000368298 BBOX1O75936 387 aa23.56■■□□□ 1.36
LMNA-204ENST00000368298 NBPF7P0C2Y1 421 aaPredicted RBP23.56■■□□□ 1.36
LMNA-204ENST00000368298 FOXO4P98177 505 aa23.56■■□□□ 1.36
LMNA-204ENST00000368298 GRAPQ13588 217 aa23.56■■□□□ 1.36
LMNA-204ENST00000368298 SOGA3Q5TF21 947 aa23.56■■□□□ 1.36
LMNA-204ENST00000368298 GRAPLQ8TC17 118 aaPredicted RBP23.56■■□□□ 1.36
LMNA-204ENST00000368298 TNNQ9UQP3 1299 aa23.56■■□□□ 1.36
LMNA-204ENST00000368298 C21orf2O43822 256 aa23.55■■□□□ 1.36
LMNA-204ENST00000368298 TMC4Q7Z404 712 aa23.54■■□□□ 1.36
LMNA-204ENST00000368298 TAF1P21675 1872 aa23.54■■□□□ 1.36
LMNA-204ENST00000368298 FER1L6Q2WGJ9 1857 aa23.53■■□□□ 1.36
LMNA-204ENST00000368298 CC2D2BQ6DHV5 1058 aa23.53■■□□□ 1.36
LMNA-204ENST00000368298 CLUAP1Q96AJ1 413 aa23.53■■□□□ 1.36
LMNA-204ENST00000368298 KAZALD1Q96I82 304 aa23.53■■□□□ 1.36
LMNA-204ENST00000368298 PPEF1O14829 653 aaPredicted RBP23.52■■□□□ 1.36
LMNA-204ENST00000368298 GRIPAP1Q4V328 841 aa23.52■■□□□ 1.36
LMNA-204ENST00000368298 ARHGAP27Q6ZUM4 889 aa23.52■■□□□ 1.36
LMNA-204ENST00000368298 DZIP1LQ8IYY4 767 aaKnown RBP23.52■■□□□ 1.36
LMNA-204ENST00000368298 SNED1Q8TER0 1413 aa23.52■■□□□ 1.36
LMNA-204ENST00000368298 RPS8P62241 208 aaKnown RBP23.51■■□□□ 1.35
LMNA-204ENST00000368298 EPHA10Q5JZY3 1008 aa23.51■■□□□ 1.35
LMNA-204ENST00000368298 CELF1Q92879 486 aaKnown RBP23.51■■□□□ 1.35
LMNA-204ENST00000368298 SUCLG2Q96I99 432 aa23.51■■□□□ 1.35
LMNA-204ENST00000368298 SEC31BQ9NQW1 1179 aa23.51■■□□□ 1.35
LMNA-204ENST00000368298 ATP6V0A2Q9Y487 856 aa23.51■■□□□ 1.35
LMNA-204ENST00000368298 MS4A1P11836 297 aa23.5■■□□□ 1.35
LMNA-204ENST00000368298 CCDC93Q567U6 631 aa23.5■■□□□ 1.35
LMNA-204ENST00000368298 SP8Q8IXZ3 490 aa23.5■■□□□ 1.35
LMNA-204ENST00000368298 GREM2Q9H772 168 aa23.5■■□□□ 1.35
LMNA-204ENST00000368298 COL4A1P02462 1669 aa23.5■■□□□ 1.35
LMNA-204ENST00000368298 LTBP3Q9NS15 1303 aa23.5■■□□□ 1.35
LMNA-204ENST00000368298 RABL6Q3YEC7 729 aaPredicted RBP23.49■■□□□ 1.35
LMNA-204ENST00000368298 RTKN2Q8IZC4 609 aa23.49■■□□□ 1.35
LMNA-204ENST00000368298 TMEM57Q8N5G2 664 aa23.49■■□□□ 1.35
LMNA-204ENST00000368298 LRRC37AA6NMS7 1700 aa23.49■■□□□ 1.35
LMNA-204ENST00000368298 RLBP1P12271 317 aa23.49■■□□□ 1.35
LMNA-204ENST00000368298 FTSJ3Q8IY81 847 aaKnown RBP23.49■■□□□ 1.35
LMNA-204ENST00000368298 ZNF219Q9P2Y4 722 aaPredicted RBP23.49■■□□□ 1.35
LMNA-204ENST00000368298 HDAC5Q9UQL6 1122 aa23.49■■□□□ 1.35
LMNA-204ENST00000368298 NFKBIEO00221 500 aa23.48■■□□□ 1.35
LMNA-204ENST00000368298 UBTFL1P0CB47 393 aaPredicted RBP23.48■■□□□ 1.35
LMNA-204ENST00000368298 LMBR1LQ6UX01 489 aa23.48■■□□□ 1.35
LMNA-204ENST00000368298 CCDC85AQ96PX6 553 aaPredicted RBP23.48■■□□□ 1.35
LMNA-204ENST00000368298 CDC5LQ99459 802 aaKnown RBP23.48■■□□□ 1.35
LMNA-204ENST00000368298 GNAI3P08754 354 aa23.47■■□□□ 1.35
LMNA-204ENST00000368298 ITGA6P23229 1130 aa23.47■■□□□ 1.35
LMNA-204ENST00000368298 OLFM4Q6UX06 510 aa23.47■■□□□ 1.35
LMNA-204ENST00000368298 MEIS3Q99687 375 aa23.47■■□□□ 1.35
LMNA-204ENST00000368298 BICC1Q9H694 974 aaKnown RBP23.47■■□□□ 1.35
LMNA-204ENST00000368298 SBF1O95248 1867 aa23.46■■□□□ 1.35
LMNA-204ENST00000368298 FAM161AQ3B820 660 aa23.46■■□□□ 1.35
LMNA-204ENST00000368298 ANKRD18AQ8IVF6 992 aa23.46■■□□□ 1.35
LMNA-204ENST00000368298 ANKRD44Q8N8A2 993 aa23.46■■□□□ 1.35
LMNA-204ENST00000368298 GOLGA6L2Q8N9W4 650 aaPredicted RBP23.46■■□□□ 1.35
LMNA-204ENST00000368298 PSMD1Q99460 953 aa23.45■■□□□ 1.34
LMNA-204ENST00000368298 TMX4Q9H1E5 349 aaPredicted RBP23.45■■□□□ 1.34
LMNA-204ENST00000368298 BSDC1Q9NW68 430 aaPredicted RBP23.45■■□□□ 1.34
LMNA-204ENST00000368298 PLIN1O60240 522 aa23.44■■□□□ 1.34
LMNA-204ENST00000368298 FKBP4Q02790 459 aaKnown RBP eCLIP23.44■■□□□ 1.34
LMNA-204ENST00000368298 IFIT5Q13325 482 aaKnown RBP23.44■■□□□ 1.34
LMNA-204ENST00000368298 PDE3AQ14432 1141 aa23.44■■□□□ 1.34
LMNA-204ENST00000368298 TAOK3Q9H2K8 898 aa23.44■■□□□ 1.34
LMNA-204ENST00000368298 ANKRD18BA2A2Z9 1011 aa23.43■■□□□ 1.34
LMNA-204ENST00000368298 SUPT16HQ9Y5B9 1047 aaKnown RBP23.43■■□□□ 1.34
LMNA-204ENST00000368298 ZBTB7BO15156 539 aaPredicted RBP23.43■■□□□ 1.34
LMNA-204ENST00000368298 NEFLP07196 543 aa23.43■■□□□ 1.34
LMNA-204ENST00000368298 SLC51AQ86UW1 340 aa23.43■■□□□ 1.34
LMNA-204ENST00000368298 PANK1Q8TE04 598 aa23.43■■□□□ 1.34
LMNA-204ENST00000368298 RTFDC1Q9BY42 306 aaPredicted RBP23.43■■□□□ 1.34
LMNA-204ENST00000368298 LMNB1P20700 586 aa23.42■■□□□ 1.34
LMNA-204ENST00000368298 PRELPP51888 382 aa23.42■■□□□ 1.34
LMNA-204ENST00000368298 RASSF7Q02833 373 aa23.42■■□□□ 1.34
LMNA-204ENST00000368298 CCDC57Q2TAC2 916 aa23.42■■□□□ 1.34
LMNA-204ENST00000368298 IGHMBP2P38935 993 aaKnown RBP23.41■■□□□ 1.34
LMNA-204ENST00000368298 ITPRIPQ8IWB1 547 aa23.41■■□□□ 1.34
LMNA-204ENST00000368298 ZNF784Q8NCA9 323 aaPredicted RBP23.41■■□□□ 1.34
LMNA-204ENST00000368298 LTBP1Q14766 1721 aa23.4■■□□□ 1.34
LMNA-204ENST00000368298 CCDC88AQ3V6T2 1871 aa23.4■■□□□ 1.34
LMNA-204ENST00000368298 MPNDQ8N594 471 aa23.4■■□□□ 1.34
LMNA-204ENST00000368298 PODXL2Q9NZ53 605 aa23.4■■□□□ 1.34
LMNA-204ENST00000368298 CHMP3Q9Y3E7 222 aa23.4■■□□□ 1.34
LMNA-204ENST00000368298 LRRFIP2Q9Y608 721 aaKnown RBP23.4■■□□□ 1.34
LMNA-204ENST00000368298 MVPQ14764 893 aaKnown RBP23.39■■□□□ 1.34
LMNA-204ENST00000368298 VPS33BQ9H267 617 aa23.39■■□□□ 1.34
LMNA-204ENST00000368298 DICER1Q9UPY3 1922 aaKnown RBP23.39■■□□□ 1.33
LMNA-204ENST00000368298 SPEF2Q9C093 1822 aa23.38■■□□□ 1.33
LMNA-204ENST00000368298 GNAI2P04899 355 aa23.38■■□□□ 1.33
LMNA-204ENST00000368298 MTX1Q13505 466 aa23.38■■□□□ 1.33
LMNA-204ENST00000368298 C9orf131Q5VYM1 1079 aa23.38■■□□□ 1.33
Retrieved 100 of 20,778 RNA–protein pairs in 72.7 ms