RNA–Protein interactions for RNA: ENST00000366304.3

HMGB1P39-201, Transcript of high mobility group box 1 pseudogene 39, humanhuman

BASIC

Gene HMGB1P39, Length 880 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P39-201ENST00000366304 COL3A1P02461 1466 aaPredicted RBP11.51□□□□□ -0.57
HMGB1P39-201ENST00000366304 NOGQ13253 232 aa11.51□□□□□ -0.57
HMGB1P39-201ENST00000366304 USP48Q86UV5 1035 aa11.51□□□□□ -0.57
HMGB1P39-201ENST00000366304 NIM1KQ8IY84 436 aa11.51□□□□□ -0.57
HMGB1P39-201ENST00000366304 PHACTR3Q96KR7 559 aa11.51□□□□□ -0.57
HMGB1P39-201ENST00000366304 RNF186Q9NXI6 227 aa11.51□□□□□ -0.57
HMGB1P39-201ENST00000366304 RIC1Q4ADV7 1423 aa11.51□□□□□ -0.57
HMGB1P39-201ENST00000366304 BTBD11A6QL63 1104 aa11.5□□□□□ -0.57
HMGB1P39-201ENST00000366304 ATMINO43313 823 aaPredicted RBP11.5□□□□□ -0.57
HMGB1P39-201ENST00000366304 PPIP5K2O43314 1243 aa11.5□□□□□ -0.57
HMGB1P39-201ENST00000366304 DIAPH1O60610 1272 aaKnown RBP11.5□□□□□ -0.57
HMGB1P39-201ENST00000366304 TRPA1O75762 1119 aa11.5□□□□□ -0.57
HMGB1P39-201ENST00000366304 HUNKP57058 714 aa11.5□□□□□ -0.57
HMGB1P39-201ENST00000366304 KIF23Q02241 960 aaPredicted RBP11.5□□□□□ -0.57
HMGB1P39-201ENST00000366304 CC2D2BQ6DHV5 1058 aa11.5□□□□□ -0.57
HMGB1P39-201ENST00000366304 ZNF652Q9Y2D9 606 aa11.5□□□□□ -0.57
HMGB1P39-201ENST00000366304 UBN2Q6ZU65 1347 aa11.5□□□□□ -0.57
HMGB1P39-201ENST00000366304 PPEF1O14829 653 aaPredicted RBP11.49□□□□□ -0.57
HMGB1P39-201ENST00000366304 EGFRP00533 1210 aa11.49□□□□□ -0.57
HMGB1P39-201ENST00000366304 HSPA5P11021 654 aaKnown RBP11.49□□□□□ -0.57
HMGB1P39-201ENST00000366304 ASTLQ6HA08 431 aaPredicted RBP11.49□□□□□ -0.57
HMGB1P39-201ENST00000366304 NPM2Q86SE8 214 aaKnown RBP11.49□□□□□ -0.57
HMGB1P39-201ENST00000366304 BMP2KQ9NSY1 1161 aaPredicted RBP11.49□□□□□ -0.57
HMGB1P39-201ENST00000366304 PCDHB8Q9UN66 801 aa11.49□□□□□ -0.57
HMGB1P39-201ENST00000366304 RGL2O15211 777 aa11.48□□□□□ -0.57
HMGB1P39-201ENST00000366304 RAD17O75943 681 aa11.48□□□□□ -0.57
HMGB1P39-201ENST00000366304 SUSD4Q5VX71 490 aa11.48□□□□□ -0.57
HMGB1P39-201ENST00000366304 CRAMP1Q96RY5 1269 aa11.48□□□□□ -0.57
HMGB1P39-201ENST00000366304 SAGE1Q9NXZ1 904 aa11.48□□□□□ -0.57
HMGB1P39-201ENST00000366304 ZNRF3Q9ULT6 936 aa11.48□□□□□ -0.57
HMGB1P39-201ENST00000366304 HPS5Q9UPZ3 1129 aa11.48□□□□□ -0.57
HMGB1P39-201ENST00000366304 KIF7Q2M1P5 1343 aa11.48□□□□□ -0.57
HMGB1P39-201ENST00000366304 YDJCA8MPS7 323 aa11.47□□□□□ -0.57
HMGB1P39-201ENST00000366304 SNRPA1P09661 255 aaKnown RBP11.47□□□□□ -0.57
HMGB1P39-201ENST00000366304 CHRM1P11229 460 aaPredicted RBP11.47□□□□□ -0.57
HMGB1P39-201ENST00000366304 GTF2E1P29083 439 aaPredicted RBP11.47□□□□□ -0.57
HMGB1P39-201ENST00000366304 RGMBQ6NW40 437 aa11.47□□□□□ -0.57
HMGB1P39-201ENST00000366304 TTLL7Q6ZT98 887 aa11.47□□□□□ -0.57
HMGB1P39-201ENST00000366304 CDC37L1Q7L3B6 337 aa11.47□□□□□ -0.57
HMGB1P39-201ENST00000366304 ZC3H15Q8WU90 426 aaKnown RBP11.47□□□□□ -0.57
HMGB1P39-201ENST00000366304 RPGRQ92834 1020 aaKnown RBP11.47□□□□□ -0.57
HMGB1P39-201ENST00000366304 CSRNP1Q96S65 589 aa11.47□□□□□ -0.57
HMGB1P39-201ENST00000366304 RTFDC1Q9BY42 306 aaPredicted RBP11.47□□□□□ -0.57
HMGB1P39-201ENST00000366304 KNSTRNQ9Y448 316 aa11.47□□□□□ -0.57
HMGB1P39-201ENST00000366304 ADM5C9JUS6 153 aa11.46□□□□□ -0.57
HMGB1P39-201ENST00000366304 GPTP24298 496 aa11.46□□□□□ -0.57
HMGB1P39-201ENST00000366304 TIE1P35590 1138 aa11.46□□□□□ -0.57
HMGB1P39-201ENST00000366304 ATN1P54259 1190 aaPredicted RBP11.46□□□□□ -0.57
HMGB1P39-201ENST00000366304 MCM10Q7L590 875 aa11.46□□□□□ -0.57
HMGB1P39-201ENST00000366304 SAMD7Q7Z3H4 446 aa11.46□□□□□ -0.57
HMGB1P39-201ENST00000366304 CTU1Q7Z7A3 348 aaKnown RBP11.46□□□□□ -0.57
HMGB1P39-201ENST00000366304 GAS2L2Q8NHY3 880 aa11.46□□□□□ -0.57
HMGB1P39-201ENST00000366304 CNOT7Q9UIV1 285 aaKnown RBP11.46□□□□□ -0.57
HMGB1P39-201ENST00000366304 NTSR2O95665 410 aa11.45□□□□□ -0.58
HMGB1P39-201ENST00000366304 HABP4Q5JVS0 413 aaKnown RBP11.45□□□□□ -0.58
HMGB1P39-201ENST00000366304 NGEFQ8N5V2 710 aa11.45□□□□□ -0.58
HMGB1P39-201ENST00000366304 ATP6V0A2Q9Y487 856 aa11.45□□□□□ -0.58
HMGB1P39-201ENST00000366304 ASTN2O75129 1339 aaPredicted RBP11.44□□□□□ -0.58
HMGB1P39-201ENST00000366304 TTLL13PA6NNM8 815 aa11.44□□□□□ -0.58
HMGB1P39-201ENST00000366304 U2SURPO15042 1029 aaKnown RBP11.44□□□□□ -0.58
HMGB1P39-201ENST00000366304 DCTN1Q14203 1278 aa11.44□□□□□ -0.58
HMGB1P39-201ENST00000366304 GRIPAP1Q4V328 841 aa11.44□□□□□ -0.58
HMGB1P39-201ENST00000366304 MICALL2Q8IY33 904 aa11.44□□□□□ -0.58
HMGB1P39-201ENST00000366304 RBM17Q96I25 401 aaKnown RBP11.44□□□□□ -0.58
HMGB1P39-201ENST00000366304 GBA2Q9HCG7 927 aaPredicted RBP11.44□□□□□ -0.58
HMGB1P39-201ENST00000366304 MIS18AQ9NYP9 233 aa11.44□□□□□ -0.58
HMGB1P39-201ENST00000366304 DUOX1Q9NRD9 1551 aa11.44□□□□□ -0.58
HMGB1P39-201ENST00000366304 ABCC4O15439 1325 aa11.43□□□□□ -0.58
HMGB1P39-201ENST00000366304 MAP3K15Q6ZN16 1313 aa11.43□□□□□ -0.58
HMGB1P39-201ENST00000366304 CDHR2Q9BYE9 1310 aa11.43□□□□□ -0.58
HMGB1P39-201ENST00000366304 PER1O15534 1290 aaPredicted RBP11.43□□□□□ -0.58
HMGB1P39-201ENST00000366304 SLC10A3P09131 477 aa11.43□□□□□ -0.58
HMGB1P39-201ENST00000366304 ZNF157P51786 506 aaPredicted RBP11.43□□□□□ -0.58
HMGB1P39-201ENST00000366304 KIAA2012Q0VF49 1180 aa11.43□□□□□ -0.58
HMGB1P39-201ENST00000366304 TBC1D10BQ4KMP7 808 aaPredicted RBP11.43□□□□□ -0.58
HMGB1P39-201ENST00000366304 KRT26Q7Z3Y9 468 aa11.43□□□□□ -0.58
HMGB1P39-201ENST00000366304 ZNF34Q8IZ26 560 aa11.43□□□□□ -0.58
HMGB1P39-201ENST00000366304 BCL2L13Q9BXK5 485 aa11.43□□□□□ -0.58
HMGB1P39-201ENST00000366304 NYXQ9GZU5 481 aa11.43□□□□□ -0.58
HMGB1P39-201ENST00000366304 RSPH6AQ9H0K4 717 aa11.43□□□□□ -0.58
HMGB1P39-201ENST00000366304 KCNQ5Q9NR82 932 aa11.43□□□□□ -0.58
HMGB1P39-201ENST00000366304 IBTKQ9P2D0 1353 aaPredicted RBP11.42□□□□□ -0.58
HMGB1P39-201ENST00000366304 MKI67P46013 3256 aaKnown RBP11.42□□□□□ -0.58
HMGB1P39-201ENST00000366304 ERVV-1B6SEH8 477 aa11.42□□□□□ -0.58
HMGB1P39-201ENST00000366304 PRKAR2BP31323 418 aa11.42□□□□□ -0.58
HMGB1P39-201ENST00000366304 CC2D1BQ5T0F9 858 aaKnown RBP11.42□□□□□ -0.58
HMGB1P39-201ENST00000366304 RASAL3Q86YV0 1011 aa11.42□□□□□ -0.58
HMGB1P39-201ENST00000366304 CCDC102AQ96A19 550 aa11.42□□□□□ -0.58
HMGB1P39-201ENST00000366304 VPS33BQ9H267 617 aa11.42□□□□□ -0.58
HMGB1P39-201ENST00000366304 ZBTB3Q9H5J0 574 aa11.42□□□□□ -0.58
HMGB1P39-201ENST00000366304 HTTP42858 3142 aa11.42□□□□□ -0.58
HMGB1P39-201ENST00000366304 ZNF467Q7Z7K2 595 aaPredicted RBP11.41□□□□□ -0.58
HMGB1P39-201ENST00000366304 C2orf69Q8N8R5 385 aa11.41□□□□□ -0.58
HMGB1P39-201ENST00000366304 ZNF296Q8WUU4 475 aaPredicted RBP11.41□□□□□ -0.58
HMGB1P39-201ENST00000366304 TMEM106CQ9BVX2 250 aa11.41□□□□□ -0.58
HMGB1P39-201ENST00000366304 COL4A1P02462 1669 aa11.4□□□□□ -0.58
HMGB1P39-201ENST00000366304 NUP98P52948 1817 aa11.4□□□□□ -0.58
HMGB1P39-201ENST00000366304 PSMD14O00487 310 aa11.4□□□□□ -0.58
HMGB1P39-201ENST00000366304 TBC1D8O95759 1140 aa11.4□□□□□ -0.58
HMGB1P39-201ENST00000366304 FXR1P51114 621 aaKnown RBP eCLIP11.4□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms