RNA–Protein interactions for RNA: ENST00000358544.6

VPS13B-203, Transcript of vacuolar protein sorting 13 homolog B, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene VPS13B, Length 14,094 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13B-203ENST00000358544 SPECC1Q5M775 1068 aa6.93□□□□□ -1.3
VPS13B-203ENST00000358544 DDX41Q9UJV9 622 aaKnown RBP6.93□□□□□ -1.3
VPS13B-203ENST00000358544 CCDC38Q502W7 563 aa6.93□□□□□ -1.3
VPS13B-203ENST00000358544 GOLGA6BA6NDN3 693 aa6.93□□□□□ -1.3
VPS13B-203ENST00000358544 NFE2L2Q16236 605 aa6.93□□□□□ -1.3
VPS13B-203ENST00000358544 CPLX4Q7Z7G2 160 aa6.93□□□□□ -1.3
VPS13B-203ENST00000358544 KIF1BPQ96EK5 621 aa6.93□□□□□ -1.3
VPS13B-203ENST00000358544 RPGRIP1LQ68CZ1 1315 aa6.93□□□□□ -1.3
VPS13B-203ENST00000358544 AKR1B10O60218 316 aa6.93□□□□□ -1.3
VPS13B-203ENST00000358544 TRIOBPQ9H2D6 2365 aa6.93□□□□□ -1.3
VPS13B-203ENST00000358544 RTL1A6NKG5 1358 aa6.93□□□□□ -1.3
VPS13B-203ENST00000358544 SPAG1Q07617 926 aa6.93□□□□□ -1.3
VPS13B-203ENST00000358544 CNPY4Q8N129 248 aa6.93□□□□□ -1.3
VPS13B-203ENST00000358544 TMEM63CQ9P1W3 806 aa6.93□□□□□ -1.3
VPS13B-203ENST00000358544 PYCARDQ9ULZ3 195 aa6.93□□□□□ -1.3
VPS13B-203ENST00000358544 TCEAL9Q9UHQ7 104 aa6.93□□□□□ -1.3
VPS13B-203ENST00000358544 PNMA8AQ86V59 439 aaPredicted RBP6.93□□□□□ -1.3
VPS13B-203ENST00000358544 FAM114A1Q8IWE2 563 aa6.93□□□□□ -1.3
VPS13B-203ENST00000358544 TTC14Q96N46 770 aa6.93□□□□□ -1.3
VPS13B-203ENST00000358544 GSTTP1A0A1W2PQM5 241 aa6.92□□□□□ -1.3
VPS13B-203ENST00000358544 FAM71BQ8TC56 605 aa6.92□□□□□ -1.3
VPS13B-203ENST00000358544 ZNF853P0CG23 659 aa6.92□□□□□ -1.3
VPS13B-203ENST00000358544 MPHOSPH8Q99549 860 aa6.92□□□□□ -1.3
VPS13B-203ENST00000358544 ORC3Q9UBD5 711 aaPredicted RBP6.92□□□□□ -1.3
VPS13B-203ENST00000358544 C9orf84Q5VXU9 1444 aa6.92□□□□□ -1.3
VPS13B-203ENST00000358544 IBTKQ9P2D0 1353 aaPredicted RBP6.92□□□□□ -1.3
VPS13B-203ENST00000358544 SH3BGRP55822 239 aaPredicted RBP6.92□□□□□ -1.3
VPS13B-203ENST00000358544 ARFGAP2Q8N6H7 521 aa6.92□□□□□ -1.3
VPS13B-203ENST00000358544 USP16Q9Y5T5 823 aa6.92□□□□□ -1.3
VPS13B-203ENST00000358544 CEP85LQ5SZL2 805 aa6.92□□□□□ -1.3
VPS13B-203ENST00000358544 HDGFL1Q5TGJ6 251 aa6.92□□□□□ -1.3
VPS13B-203ENST00000358544 DAAM2Q86T65 1068 aa6.92□□□□□ -1.3
VPS13B-203ENST00000358544 AMOTL1Q8IY63 956 aa6.92□□□□□ -1.3
VPS13B-203ENST00000358544 UBAC1Q9BSL1 405 aa6.92□□□□□ -1.3
VPS13B-203ENST00000358544 LUC7L3O95232 432 aaKnown RBP6.92□□□□□ -1.3
VPS13B-203ENST00000358544 LMOD1P29536 600 aaPredicted RBP6.92□□□□□ -1.3
VPS13B-203ENST00000358544 ATP11AP98196 1134 aa6.92□□□□□ -1.3
VPS13B-203ENST00000358544 CNNM3Q8NE01 707 aa6.92□□□□□ -1.3
VPS13B-203ENST00000358544 CIB2O75838 187 aa6.92□□□□□ -1.3
VPS13B-203ENST00000358544 CFAP58Q5T655 872 aa6.92□□□□□ -1.3
VPS13B-203ENST00000358544 DDX24Q9GZR7 859 aaKnown RBP eCLIP6.92□□□□□ -1.34e-7■■■■■ 34.5
VPS13B-203ENST00000358544 ZSCAN16Q9H4T2 348 aaPredicted RBP6.92□□□□□ -1.3
VPS13B-203ENST00000358544 KIF1CO43896 1103 aaKnown RBP6.92□□□□□ -1.3
VPS13B-203ENST00000358544 GNGT1P63211 74 aa6.92□□□□□ -1.3
VPS13B-203ENST00000358544 ODF2LQ9ULJ1 636 aa6.92□□□□□ -1.3
VPS13B-203ENST00000358544 NSD3Q9BZ95 1437 aa6.92□□□□□ -1.3
VPS13B-203ENST00000358544 SEC31AO94979 1220 aaKnown RBP6.92□□□□□ -1.3
VPS13B-203ENST00000358544 CCDC96Q2M329 555 aa6.92□□□□□ -1.3
VPS13B-203ENST00000358544 BIRC2Q13490 618 aa6.92□□□□□ -1.3
VPS13B-203ENST00000358544 NECAB1Q8N987 351 aa6.92□□□□□ -1.3
VPS13B-203ENST00000358544 CTAGE1Q96RT6 745 aa6.92□□□□□ -1.3
VPS13B-203ENST00000358544 CCDC160A6NGH7 325 aa6.92□□□□□ -1.3
VPS13B-203ENST00000358544 SETDB1Q15047 1291 aa6.92□□□□□ -1.3
VPS13B-203ENST00000358544 TTC39AQ5SRH9 613 aa6.92□□□□□ -1.3
VPS13B-203ENST00000358544 CCDC155Q8N6L0 562 aa6.92□□□□□ -1.3
VPS13B-203ENST00000358544 A0A087WUV0 522 aaPredicted RBP6.91□□□□□ -1.3
VPS13B-203ENST00000358544 ANKRD18BA2A2Z9 1011 aa6.91□□□□□ -1.3
VPS13B-203ENST00000358544 FGFR1OPO95684 399 aaKnown RBP6.91□□□□□ -1.3
VPS13B-203ENST00000358544 CLCN6P51797 869 aa6.91□□□□□ -1.3
VPS13B-203ENST00000358544 BRF1Q92994 677 aa6.91□□□□□ -1.3
VPS13B-203ENST00000358544 ATP8B1O43520 1251 aa6.91□□□□□ -1.3
VPS13B-203ENST00000358544 RRAGBQ5VZM2 374 aa6.91□□□□□ -1.3
VPS13B-203ENST00000358544 ARHGAP45Q92619 1136 aa6.91□□□□□ -1.3
VPS13B-203ENST00000358544 TAOK3Q9H2K8 898 aa6.91□□□□□ -1.3
VPS13B-203ENST00000358544 LOC102724159A0A0B4J2E5 919 aa6.91□□□□□ -1.3
VPS13B-203ENST00000358544 HPDP32754 393 aaPredicted RBP6.91□□□□□ -1.3
VPS13B-203ENST00000358544 PWP2Q15269 919 aaKnown RBP6.91□□□□□ -1.3
VPS13B-203ENST00000358544 RIC3Q7Z5B4 369 aa6.91□□□□□ -1.3
VPS13B-203ENST00000358544 MICAL1Q8TDZ2 1067 aa6.91□□□□□ -1.3
VPS13B-203ENST00000358544 STIM2Q9P246 746 aa6.91□□□□□ -1.3
VPS13B-203ENST00000358544 FEZ2Q9UHY8 353 aaPredicted RBP6.91□□□□□ -1.3
VPS13B-203ENST00000358544 NCAPGQ9BPX3 1015 aa6.91□□□□□ -1.3
VPS13B-203ENST00000358544 DISP3Q9P2K9 1392 aa6.91□□□□□ -1.3
VPS13B-203ENST00000358544 RAB11FIP4Q86YS3 637 aa6.91□□□□□ -1.3
VPS13B-203ENST00000358544 NOTCH3Q9UM47 2321 aa6.91□□□□□ -1.3
VPS13B-203ENST00000358544 GPT2Q8TD30 523 aa6.91□□□□□ -1.3
VPS13B-203ENST00000358544 KCNG4Q8TDN1 519 aa6.91□□□□□ -1.3
VPS13B-203ENST00000358544 GVINP1Q7Z2Y8 2422 aa6.91□□□□□ -1.3
VPS13B-203ENST00000358544 VCXQ9H320 206 aa6.91□□□□□ -1.3
VPS13B-203ENST00000358544 ECHDC1Q9NTX5 307 aa6.91□□□□□ -1.3
VPS13B-203ENST00000358544 GADD45BO75293 160 aaPredicted RBP6.91□□□□□ -1.3
VPS13B-203ENST00000358544 EXOC4Q96A65 974 aa6.91□□□□□ -1.3
VPS13B-203ENST00000358544 PPFIA4O75335 1185 aa6.91□□□□□ -1.3
VPS13B-203ENST00000358544 ZFYP08048 801 aaPredicted RBP6.91□□□□□ -1.3
VPS13B-203ENST00000358544 PNMA6AP0CW24 399 aaPredicted RBP6.91□□□□□ -1.3
VPS13B-203ENST00000358544 LZTFL1Q9NQ48 299 aa6.91□□□□□ -1.3
VPS13B-203ENST00000358544 NAP1L3Q99457 506 aaPredicted RBP6.91□□□□□ -1.3
VPS13B-203ENST00000358544 TSG101Q99816 390 aa6.91□□□□□ -1.3
VPS13B-203ENST00000358544 PRXQ9BXM0 1461 aa6.9□□□□□ -1.3
VPS13B-203ENST00000358544 CEP128Q6ZU80 1094 aa6.9□□□□□ -1.3
VPS13B-203ENST00000358544 CYLC1P35663 651 aaPredicted RBP6.9□□□□□ -1.3
VPS13B-203ENST00000358544 MTIF2P46199 727 aaKnown RBP6.9□□□□□ -1.3
VPS13B-203ENST00000358544 BAG1Q99933 345 aaPredicted RBP6.9□□□□□ -1.3
VPS13B-203ENST00000358544 SND1Q7KZF4 910 aaKnown RBP eCLIP6.9□□□□□ -1.3
VPS13B-203ENST00000358544 PPFIBP2Q8ND30 876 aa6.9□□□□□ -1.3
VPS13B-203ENST00000358544 SLC12A5Q9H2X9 1139 aa6.9□□□□□ -1.3
VPS13B-203ENST00000358544 GUCA1BQ9UMX6 200 aa6.9□□□□□ -1.3
VPS13B-203ENST00000358544 CFAP70Q5T0N1 1121 aa6.9□□□□□ -1.3
VPS13B-203ENST00000358544 FBXO38Q6PIJ6 1188 aa6.9□□□□□ -1.3
VPS13B-203ENST00000358544 SPATS2Q86XZ4 545 aaKnown RBP6.9□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms