RNA–Protein interactions for RNA: ENST00000356922.5

LIG4-201, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 4,096 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-201ENST00000356922 PARP10Q53GL7 1025 aa5.07□□□□□ -1.6
LIG4-201ENST00000356922 CEP85Q6P2H3 762 aa5.07□□□□□ -1.6
LIG4-201ENST00000356922 FHDC1Q9C0D6 1143 aaPredicted RBP5.07□□□□□ -1.6
LIG4-201ENST00000356922 PARP3Q9Y6F1 533 aa5.07□□□□□ -1.6
LIG4-201ENST00000356922 PXDNLA1KZ92 1463 aa5.07□□□□□ -1.6
LIG4-201ENST00000356922 SRGNP10124 158 aa5.07□□□□□ -1.6
LIG4-201ENST00000356922 GTF2E1P29083 439 aaPredicted RBP5.07□□□□□ -1.6
LIG4-201ENST00000356922 RABL6Q3YEC7 729 aaPredicted RBP5.07□□□□□ -1.6
LIG4-201ENST00000356922 KLHL34Q8N239 644 aa5.07□□□□□ -1.6
LIG4-201ENST00000356922 GOLGA6L2Q8N9W4 650 aaPredicted RBP5.07□□□□□ -1.6
LIG4-201ENST00000356922 NPHP1O15259 732 aa5.06□□□□□ -1.6
LIG4-201ENST00000356922 DPEP1P16444 411 aa5.06□□□□□ -1.6
LIG4-201ENST00000356922 CRY2Q49AN0 593 aa5.06□□□□□ -1.6
LIG4-201ENST00000356922 LRRC24Q50LG9 513 aa5.06□□□□□ -1.6
LIG4-201ENST00000356922 SPON1Q9HCB6 807 aa5.06□□□□□ -1.6
LIG4-201ENST00000356922 DDX19BQ9UMR2 479 aa5.06□□□□□ -1.6
LIG4-201ENST00000356922 RGL2O15211 777 aa5.06□□□□□ -1.6
LIG4-201ENST00000356922 CTSWP56202 376 aa5.06□□□□□ -1.6
LIG4-201ENST00000356922 PTPN12Q05209 780 aaKnown RBP5.06□□□□□ -1.6
LIG4-201ENST00000356922 BRIP1Q9BX63 1249 aa5.06□□□□□ -1.6
LIG4-201ENST00000356922 PDE8AO60658 829 aa5.06□□□□□ -1.6
LIG4-201ENST00000356922 GNAI2P04899 355 aa5.06□□□□□ -1.6
LIG4-201ENST00000356922 ITGA6P23229 1130 aa5.06□□□□□ -1.6
LIG4-201ENST00000356922 SF3B3Q15393 1217 aaKnown RBP5.06□□□□□ -1.6
LIG4-201ENST00000356922 B4GALNT3Q6L9W6 998 aa5.06□□□□□ -1.6
LIG4-201ENST00000356922 SYT17Q9BSW7 474 aa5.06□□□□□ -1.6
LIG4-201ENST00000356922 PLA2G12BQ9BX93 195 aa5.06□□□□□ -1.6
LIG4-201ENST00000356922 SIL1Q9H173 461 aa5.06□□□□□ -1.6
LIG4-201ENST00000356922 GTF3C3Q9Y5Q9 886 aa5.06□□□□□ -1.6
LIG4-201ENST00000356922 CDHR2Q9BYE9 1310 aa5.06□□□□□ -1.6
LIG4-201ENST00000356922 LAMB2P55268 1798 aa5.05□□□□□ -1.6
LIG4-201ENST00000356922 N4BP2Q86UW6 1770 aaPredicted RBP5.05□□□□□ -1.6
LIG4-201ENST00000356922 SRGAP3O43295 1099 aa5.05□□□□□ -1.6
LIG4-201ENST00000356922 HELBQ8NG08 1087 aaPredicted RBP5.05□□□□□ -1.6
LIG4-201ENST00000356922 BCL11AQ9H165 835 aa5.05□□□□□ -1.6
LIG4-201ENST00000356922 ZNF219Q9P2Y4 722 aaPredicted RBP5.05□□□□□ -1.6
LIG4-201ENST00000356922 COL11A2P13942 1736 aaPredicted RBP5.05□□□□□ -1.6
LIG4-201ENST00000356922 ATP8B2P98198 1209 aa5.05□□□□□ -1.6
LIG4-201ENST00000356922 ATG9AQ7Z3C6 839 aa5.05□□□□□ -1.6
LIG4-201ENST00000356922 NLRP3Q96P20 1036 aa5.05□□□□□ -1.6
LIG4-201ENST00000356922 EXOC6BQ9Y2D4 811 aa5.05□□□□□ -1.6
LIG4-201ENST00000356922 CHMP3Q9Y3E7 222 aa5.05□□□□□ -1.6
LIG4-201ENST00000356922 C10orf71Q711Q0 1435 aa5.05□□□□□ -1.6
LIG4-201ENST00000356922 APBB1O00213 710 aa5.05□□□□□ -1.6
LIG4-201ENST00000356922 GNAI3P08754 354 aa5.05□□□□□ -1.6
LIG4-201ENST00000356922 POLA2Q14181 598 aa5.05□□□□□ -1.6
LIG4-201ENST00000356922 SSH3Q8TE77 659 aa5.05□□□□□ -1.6
LIG4-201ENST00000356922 NYXQ9GZU5 481 aa5.05□□□□□ -1.6
LIG4-201ENST00000356922 KIAA1551Q9HCM1 1747 aa5.05□□□□□ -1.6
LIG4-201ENST00000356922 TAF5LO75529 589 aa5.04□□□□□ -1.6
LIG4-201ENST00000356922 SASH1O94885 1247 aa5.04□□□□□ -1.6
LIG4-201ENST00000356922 MTX1Q13505 466 aa5.04□□□□□ -1.6
LIG4-201ENST00000356922 C2CD5Q86YS7 1000 aa5.04□□□□□ -1.6
LIG4-201ENST00000356922 C16orf71Q8IYS4 520 aaPredicted RBP5.04□□□□□ -1.6
LIG4-201ENST00000356922 C7orf43Q8WVR3 580 aa5.04□□□□□ -1.6
LIG4-201ENST00000356922 GPR101Q96P66 508 aaPredicted RBP5.04□□□□□ -1.6
LIG4-201ENST00000356922 SLX4Q8IY92 1834 aa5.04□□□□□ -1.6
LIG4-201ENST00000356922 SMARCA5O60264 1052 aaPredicted RBP5.04□□□□□ -1.6
LIG4-201ENST00000356922 KLRK1P26718 216 aa5.04□□□□□ -1.6
LIG4-201ENST00000356922 PRELPP51888 382 aa5.04□□□□□ -1.6
LIG4-201ENST00000356922 ZNF622Q969S3 477 aaKnown RBP eCLIP5.04□□□□□ -1.6
LIG4-201ENST00000356922 IBTKQ9P2D0 1353 aaPredicted RBP5.04□□□□□ -1.6
LIG4-201ENST00000356922 POLD1P28340 1107 aa5.04□□□□□ -1.6
LIG4-201ENST00000356922 HOXA10P31260 410 aaPredicted RBP5.04□□□□□ -1.6
LIG4-201ENST00000356922 ST5P78524 1137 aa5.04□□□□□ -1.6
LIG4-201ENST00000356922 TXNRD3Q86VQ6 643 aa5.04□□□□□ -1.6
LIG4-201ENST00000356922 RIPOR2Q9Y4F9 1068 aa5.04□□□□□ -1.6
LIG4-201ENST00000356922 MS4A1P11836 297 aa5.03□□□□□ -1.6
LIG4-201ENST00000356922 YBX3P16989 372 aaKnown RBP eCLIP5.03□□□□□ -1.6
LIG4-201ENST00000356922 HMGB2P26583 209 aaKnown RBP5.03□□□□□ -1.6
LIG4-201ENST00000356922 OTUD7AQ8TE49 926 aaPredicted RBP5.03□□□□□ -1.6
LIG4-201ENST00000356922 C21orf2O43822 256 aa5.03□□□□□ -1.6
LIG4-201ENST00000356922 RPS8P62241 208 aaKnown RBP5.03□□□□□ -1.6
LIG4-201ENST00000356922 MINPP1Q9UNW1 487 aa5.03□□□□□ -1.6
LIG4-201ENST00000356922 H0YIN7 160 aa5.03□□□□□ -1.6
LIG4-201ENST00000356922 TIMM10P62072 90 aa5.03□□□□□ -1.6
LIG4-201ENST00000356922 PRPF40BQ6NWY9 871 aaKnown RBP5.03□□□□□ -1.6
LIG4-201ENST00000356922 IL1RAPL2Q9NP60 686 aa5.03□□□□□ -1.6
LIG4-201ENST00000356922 KIF13BQ9NQT8 1826 aa5.03□□□□□ -1.6
LIG4-201ENST00000356922 MYH3P11055 1940 aa5.03□□□□□ -1.6
LIG4-201ENST00000356922 SURF6O75683 361 aaKnown RBP5.02□□□□□ -1.61
LIG4-201ENST00000356922 IFIT5Q13325 482 aaKnown RBP5.02□□□□□ -1.61
LIG4-201ENST00000356922 CCDC152Q4G0S7 254 aa5.02□□□□□ -1.61
LIG4-201ENST00000356922 LDHAL6AQ6ZMR3 332 aa5.02□□□□□ -1.61
LIG4-201ENST00000356922 VGLL2Q8N8G2 317 aa5.02□□□□□ -1.61
LIG4-201ENST00000356922 MASTLQ96GX5 879 aa5.02□□□□□ -1.61
LIG4-201ENST00000356922 DCTPP1Q9H773 170 aa5.02□□□□□ -1.61
LIG4-201ENST00000356922 COPRSQ9NQ92 184 aa5.02□□□□□ -1.61
LIG4-201ENST00000356922 TLR7Q9NYK1 1049 aaKnown RBP5.02□□□□□ -1.61
LIG4-201ENST00000356922 POLLQ9UGP5 575 aa5.02□□□□□ -1.61
LIG4-201ENST00000356922 CD2APQ9Y5K6 639 aa5.02□□□□□ -1.61
LIG4-201ENST00000356922 KDM2BQ8NHM5 1336 aa5.02□□□□□ -1.61
LIG4-201ENST00000356922 PDE6BP35913 854 aa5.02□□□□□ -1.61
LIG4-201ENST00000356922 TFCP2Q12800 502 aa5.02□□□□□ -1.61
LIG4-201ENST00000356922 GRAPQ13588 217 aa5.02□□□□□ -1.61
LIG4-201ENST00000356922 CCDC57Q2TAC2 916 aa5.02□□□□□ -1.61
LIG4-201ENST00000356922 RPAP2Q8IXW5 612 aaPredicted RBP5.02□□□□□ -1.61
LIG4-201ENST00000356922 GRAPLQ8TC17 118 aaPredicted RBP5.02□□□□□ -1.61
LIG4-201ENST00000356922 SNED1Q8TER0 1413 aa5.02□□□□□ -1.61
LIG4-201ENST00000356922 CACNA1SQ13698 1873 aa5.02□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms