RNA–Protein interactions for RNA: ENST00000349062.6

TRIM4-201, Transcript of tripartite motif containing 4, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TRIM4, Length 3,374 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM4-201ENST00000349062 TRMT112Q9UI30 125 aaKnown RBP16.64■□□□□ 0.26
TRIM4-201ENST00000349062 LMTK3Q96Q04 1460 aa16.64■□□□□ 0.25
TRIM4-201ENST00000349062 CEP126Q9P2H0 1117 aa16.64■□□□□ 0.25
TRIM4-201ENST00000349062 CACNA1FO60840 1977 aa16.64■□□□□ 0.25
TRIM4-201ENST00000349062 ADORA1P30542 326 aa16.64■□□□□ 0.25
TRIM4-201ENST00000349062 RAB11FIP4Q86YS3 637 aa16.64■□□□□ 0.25
TRIM4-201ENST00000349062 MPNDQ8N594 471 aa16.64■□□□□ 0.25
TRIM4-201ENST00000349062 CWC22Q9HCG8 908 aaKnown RBP16.64■□□□□ 0.25
TRIM4-201ENST00000349062 IFIT1P09914 478 aaKnown RBP16.63■□□□□ 0.25
TRIM4-201ENST00000349062 HAND2P61296 217 aa16.63■□□□□ 0.25
TRIM4-201ENST00000349062 FAM173BQ6P4H8 233 aa16.63■□□□□ 0.25
TRIM4-201ENST00000349062 CNNM1Q9NRU3 951 aa16.63■□□□□ 0.25
TRIM4-201ENST00000349062 LMO7Q8WWI1 1683 aa16.63■□□□□ 0.25
TRIM4-201ENST00000349062 AOX1Q06278 1338 aa16.63■□□□□ 0.25
TRIM4-201ENST00000349062 A0A1B0GUL7 405 aa16.63■□□□□ 0.25
TRIM4-201ENST00000349062 HCLS1P14317 486 aaPredicted RBP16.63■□□□□ 0.25
TRIM4-201ENST00000349062 KDM3BQ7LBC6 1761 aa16.63■□□□□ 0.25
TRIM4-201ENST00000349062 COL5A2P05997 1499 aaPredicted RBP16.63■□□□□ 0.25
TRIM4-201ENST00000349062 OVOS2A0A0G2JMS6 1433 aa16.63■□□□□ 0.25
TRIM4-201ENST00000349062 NCOA3Q9Y6Q9 1424 aa16.63■□□□□ 0.25
TRIM4-201ENST00000349062 FOXO4P98177 505 aa16.63■□□□□ 0.25
TRIM4-201ENST00000349062 DDX11Q96FC9 970 aa16.63■□□□□ 0.25
TRIM4-201ENST00000349062 GOLGB1Q14789 3259 aaKnown RBP16.63■□□□□ 0.25
TRIM4-201ENST00000349062 KIF1AQ12756 1690 aa16.62■□□□□ 0.25
TRIM4-201ENST00000349062 A0A0G2JLW4 131 aa16.62■□□□□ 0.25
TRIM4-201ENST00000349062 RFX5P48382 616 aaPredicted RBP16.62■□□□□ 0.25
TRIM4-201ENST00000349062 COPRSQ9NQ92 184 aa16.62■□□□□ 0.25
TRIM4-201ENST00000349062 VPS53Q5VIR6 699 aa16.62■□□□□ 0.25
TRIM4-201ENST00000349062 CCDC24Q8N4L8 307 aa16.62■□□□□ 0.25
TRIM4-201ENST00000349062 LIMCH1Q9UPQ0 1083 aa16.62■□□□□ 0.25
TRIM4-201ENST00000349062 CPDO75976 1380 aa16.62■□□□□ 0.25
TRIM4-201ENST00000349062 BLOC1S2Q6QNY1 142 aa16.61■□□□□ 0.25
TRIM4-201ENST00000349062 SYCE3A1L190 88 aa16.61■□□□□ 0.25
TRIM4-201ENST00000349062 SLC27A2O14975 620 aa16.61■□□□□ 0.25
TRIM4-201ENST00000349062 ANAPC15P60006 121 aa16.61■□□□□ 0.25
TRIM4-201ENST00000349062 METTL24Q5JXM2 366 aa16.61■□□□□ 0.25
TRIM4-201ENST00000349062 LDHAL6AQ6ZMR3 332 aa16.61■□□□□ 0.25
TRIM4-201ENST00000349062 MCM2P49736 904 aa16.61■□□□□ 0.25
TRIM4-201ENST00000349062 PLCB2Q00722 1185 aa16.61■□□□□ 0.25
TRIM4-201ENST00000349062 TTC39AQ5SRH9 613 aa16.61■□□□□ 0.25
TRIM4-201ENST00000349062 DCCP43146 1447 aa16.61■□□□□ 0.25
TRIM4-201ENST00000349062 ALS2Q96Q42 1657 aa16.6■□□□□ 0.25
TRIM4-201ENST00000349062 GADD45BO75293 160 aaPredicted RBP16.6■□□□□ 0.25
TRIM4-201ENST00000349062 MSNP26038 577 aaKnown RBP16.6■□□□□ 0.25
TRIM4-201ENST00000349062 GJB2P29033 226 aa16.6■□□□□ 0.25
TRIM4-201ENST00000349062 IFIT5Q13325 482 aaKnown RBP16.6■□□□□ 0.25
TRIM4-201ENST00000349062 IQSEC3Q9UPP2 1182 aaPredicted RBP16.6■□□□□ 0.25
TRIM4-201ENST00000349062 RRP9O43818 475 aaKnown RBP16.6■□□□□ 0.25
TRIM4-201ENST00000349062 DDB1Q16531 1140 aa16.6■□□□□ 0.25
TRIM4-201ENST00000349062 LMBRD1Q9NUN5 540 aa16.6■□□□□ 0.25
TRIM4-201ENST00000349062 CNPY2Q9Y2B0 182 aa16.6■□□□□ 0.25
TRIM4-201ENST00000349062 H7C1W4 665 aa16.6■□□□□ 0.25
TRIM4-201ENST00000349062 ATP6V1AP38606 617 aa16.6■□□□□ 0.25
TRIM4-201ENST00000349062 TCIRG1Q13488 830 aa16.6■□□□□ 0.25
TRIM4-201ENST00000349062 C8orf37Q96NL8 207 aa16.6■□□□□ 0.25
TRIM4-201ENST00000349062 SLC4A9Q96Q91 983 aa16.6■□□□□ 0.25
TRIM4-201ENST00000349062 DZIP3Q86Y13 1208 aaKnown RBP16.59■□□□□ 0.25
TRIM4-201ENST00000349062 GREM2Q9H772 168 aa16.59■□□□□ 0.25
TRIM4-201ENST00000349062 FAM13BQ9NYF5 915 aa16.59■□□□□ 0.25
TRIM4-201ENST00000349062 EYA2O00167 538 aa16.59■□□□□ 0.25
TRIM4-201ENST00000349062 KCNQ2O43526 872 aa16.59■□□□□ 0.25
TRIM4-201ENST00000349062 NASPP49321 788 aaPredicted RBP16.59■□□□□ 0.25
TRIM4-201ENST00000349062 ME3Q16798 604 aa16.59■□□□□ 0.25
TRIM4-201ENST00000349062 SKOR2Q2VWA4 1001 aaPredicted RBP16.59■□□□□ 0.25
TRIM4-201ENST00000349062 CCDC191Q8NCU4 936 aa16.59■□□□□ 0.25
TRIM4-201ENST00000349062 PAG1Q9NWQ8 432 aa16.59■□□□□ 0.25
TRIM4-201ENST00000349062 UTYO14607 1347 aa16.59■□□□□ 0.25
TRIM4-201ENST00000349062 CEBPZQ03701 1054 aaKnown RBP16.58■□□□□ 0.25
TRIM4-201ENST00000349062 TTLL5Q6EMB2 1281 aa16.58■□□□□ 0.25
TRIM4-201ENST00000349062 ATG9AQ7Z3C6 839 aa16.58■□□□□ 0.25
TRIM4-201ENST00000349062 GPT2Q8TD30 523 aa16.58■□□□□ 0.25
TRIM4-201ENST00000349062 APPP05067 770 aa16.58■□□□□ 0.24
TRIM4-201ENST00000349062 FAM98CQ17RN3 349 aaKnown RBP16.58■□□□□ 0.24
TRIM4-201ENST00000349062 RNF20Q5VTR2 975 aa16.58■□□□□ 0.24
TRIM4-201ENST00000349062 TPCN1Q9ULQ1 816 aa16.58■□□□□ 0.24
TRIM4-201ENST00000349062 TAF5LO75529 589 aa16.57■□□□□ 0.24
TRIM4-201ENST00000349062 SYT1P21579 422 aa16.57■□□□□ 0.24
TRIM4-201ENST00000349062 C5P01031 1676 aa16.57■□□□□ 0.24
TRIM4-201ENST00000349062 IRS4O14654 1257 aaPredicted RBP16.57■□□□□ 0.24
TRIM4-201ENST00000349062 IDH1O75874 414 aaKnown RBP16.57■□□□□ 0.24
TRIM4-201ENST00000349062 CASP7P55210 303 aa16.57■□□□□ 0.24
TRIM4-201ENST00000349062 CCT2P78371 535 aaKnown RBP16.57■□□□□ 0.24
TRIM4-201ENST00000349062 ITGA6P23229 1130 aa16.57■□□□□ 0.24
TRIM4-201ENST00000349062 ATP5JP18859 108 aa16.56■□□□□ 0.24
TRIM4-201ENST00000349062 SCARF1Q14162 830 aa16.56■□□□□ 0.24
TRIM4-201ENST00000349062 R3HCC1Q9Y3T6 440 aaKnown RBP16.56■□□□□ 0.24
TRIM4-201ENST00000349062 HIP1O00291 1037 aa16.56■□□□□ 0.24
TRIM4-201ENST00000349062 IL15P40933 162 aaPredicted RBP16.56■□□□□ 0.24
TRIM4-201ENST00000349062 NECTIN1Q15223 517 aa16.56■□□□□ 0.24
TRIM4-201ENST00000349062 ZSCAN23Q3MJ62 389 aa16.56■□□□□ 0.24
TRIM4-201ENST00000349062 CCDC158Q5M9N0 1113 aa16.56■□□□□ 0.24
TRIM4-201ENST00000349062 TFIP11Q9UBB9 837 aaKnown RBP16.56■□□□□ 0.24
TRIM4-201ENST00000349062 LARP1BQ659C4 914 aaKnown RBP16.55■□□□□ 0.24
TRIM4-201ENST00000349062 USP48Q86UV5 1035 aa16.55■□□□□ 0.24
TRIM4-201ENST00000349062 XAGE2Q96GT9 111 aa16.55■□□□□ 0.24
TRIM4-201ENST00000349062 NGLY1Q96IV0 654 aa16.55■□□□□ 0.24
TRIM4-201ENST00000349062 NPHP1O15259 732 aa16.55■□□□□ 0.24
TRIM4-201ENST00000349062 STX6O43752 255 aa16.55■□□□□ 0.24
TRIM4-201ENST00000349062 GTF2E1P29083 439 aaPredicted RBP16.55■□□□□ 0.24
TRIM4-201ENST00000349062 GUCY1B3Q02153 619 aa16.55■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms