RNA–Protein interactions for RNA: ENST00000345005.8

CLK3-201, Transcript of CDC like kinase 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLK3, Length 1,846 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-201ENST00000345005 BCORQ6W2J9 1755 aa15.55■□□□□ 0.08
CLK3-201ENST00000345005 CSF1RP07333 972 aa15.55■□□□□ 0.08
CLK3-201ENST00000345005 CHMLP26374 656 aa15.55■□□□□ 0.08
CLK3-201ENST00000345005 USP26Q9BXU7 913 aa15.55■□□□□ 0.08
CLK3-201ENST00000345005 FBXO3Q9UK99 471 aa15.55■□□□□ 0.08
CLK3-201ENST00000345005 TAF1LQ8IZX4 1826 aa15.55■□□□□ 0.08
CLK3-201ENST00000345005 IL15P40933 162 aaPredicted RBP15.54■□□□□ 0.08
CLK3-201ENST00000345005 TFCP2Q12800 502 aa15.54■□□□□ 0.08
CLK3-201ENST00000345005 CCDC57Q2TAC2 916 aa15.54■□□□□ 0.08
CLK3-201ENST00000345005 GBP4Q96PP9 640 aa15.54■□□□□ 0.08
CLK3-201ENST00000345005 CCDC8Q9H0W5 538 aaPredicted RBP15.54■□□□□ 0.08
CLK3-201ENST00000345005 TRMT112Q9UI30 125 aaKnown RBP15.54■□□□□ 0.08
CLK3-201ENST00000345005 CNTNAP4Q9C0A0 1308 aa15.54■□□□□ 0.08
CLK3-201ENST00000345005 CIAO1O76071 339 aa15.54■□□□□ 0.08
CLK3-201ENST00000345005 CAMTA2O94983 1202 aa15.54■□□□□ 0.08
CLK3-201ENST00000345005 TNNI3KQ59H18 835 aa15.54■□□□□ 0.08
CLK3-201ENST00000345005 RC3H1Q5TC82 1133 aaKnown RBP15.54■□□□□ 0.08
CLK3-201ENST00000345005 LINC00116Q8NCU8 138 aa15.54■□□□□ 0.08
CLK3-201ENST00000345005 ESYT1Q9BSJ8 1104 aa15.54■□□□□ 0.08
CLK3-201ENST00000345005 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP15.54■□□□□ 0.08
CLK3-201ENST00000345005 FPGT-TNNI3KV9GXZ4 949 aa15.54■□□□□ 0.08
CLK3-201ENST00000345005 EYA2O00167 538 aa15.53■□□□□ 0.08
CLK3-201ENST00000345005 XRCC6P12956 609 aaKnown RBP eCLIP15.53■□□□□ 0.08
CLK3-201ENST00000345005 CLCN1P35523 988 aa15.53■□□□□ 0.08
CLK3-201ENST00000345005 PARP10Q53GL7 1025 aa15.53■□□□□ 0.08
CLK3-201ENST00000345005 AK7Q96M32 723 aa15.53■□□□□ 0.08
CLK3-201ENST00000345005 GPR108Q9NPR9 543 aa15.53■□□□□ 0.08
CLK3-201ENST00000345005 ZNF652Q9Y2D9 606 aa15.53■□□□□ 0.08
CLK3-201ENST00000345005 IRS4O14654 1257 aaPredicted RBP15.52■□□□□ 0.08
CLK3-201ENST00000345005 FAM182BQ5T319 152 aa15.52■□□□□ 0.08
CLK3-201ENST00000345005 PTF1AQ7RTS3 328 aa15.52■□□□□ 0.08
CLK3-201ENST00000345005 ATG9AQ7Z3C6 839 aa15.52■□□□□ 0.08
CLK3-201ENST00000345005 BRWD3Q6RI45 1802 aa15.52■□□□□ 0.08
CLK3-201ENST00000345005 EP400Q96L91 3159 aa15.52■□□□□ 0.07
CLK3-201ENST00000345005 RGL2O15211 777 aa15.52■□□□□ 0.07
CLK3-201ENST00000345005 PDE8AO60658 829 aa15.52■□□□□ 0.07
CLK3-201ENST00000345005 MAP4K4O95819 1239 aaPredicted RBP15.52■□□□□ 0.07
CLK3-201ENST00000345005 IFIT5Q13325 482 aaKnown RBP15.52■□□□□ 0.07
CLK3-201ENST00000345005 CLEC4GQ6UXB4 293 aa15.52■□□□□ 0.07
CLK3-201ENST00000345005 UBN2Q6ZU65 1347 aa15.52■□□□□ 0.07
CLK3-201ENST00000345005 HSP90B1P14625 803 aaKnown RBP15.51■□□□□ 0.07
CLK3-201ENST00000345005 EVI5LQ96CN4 794 aa15.51■□□□□ 0.07
CLK3-201ENST00000345005 EPB41L2O43491 1005 aaKnown RBP15.5■□□□□ 0.07
CLK3-201ENST00000345005 CTSWP56202 376 aa15.5■□□□□ 0.07
CLK3-201ENST00000345005 TAF7LQ5H9L4 462 aa15.5■□□□□ 0.07
CLK3-201ENST00000345005 SYNE4Q8N205 404 aa15.5■□□□□ 0.07
CLK3-201ENST00000345005 TTLL11Q8NHH1 800 aa15.5■□□□□ 0.07
CLK3-201ENST00000345005 ZNF594Q96JF6 807 aaPredicted RBP15.5■□□□□ 0.07
CLK3-201ENST00000345005 UTP14AQ9BVJ6 771 aaKnown RBP15.5■□□□□ 0.07
CLK3-201ENST00000345005 LAMB2P55268 1798 aa15.5■□□□□ 0.07
CLK3-201ENST00000345005 SH3TC1Q8TE82 1336 aa15.5■□□□□ 0.07
CLK3-201ENST00000345005 ATP5JP18859 108 aa15.5■□□□□ 0.07
CLK3-201ENST00000345005 SUSD4Q5VX71 490 aa15.5■□□□□ 0.07
CLK3-201ENST00000345005 KIF2CQ99661 725 aa15.5■□□□□ 0.07
CLK3-201ENST00000345005 BCL11BQ9C0K0 894 aaPredicted RBP15.5■□□□□ 0.07
CLK3-201ENST00000345005 TLR7Q9NYK1 1049 aaKnown RBP15.5■□□□□ 0.07
CLK3-201ENST00000345005 CCNL1Q9UK58 526 aaPredicted RBP15.5■□□□□ 0.07
CLK3-201ENST00000345005 ANKRD18BA2A2Z9 1011 aa15.49■□□□□ 0.07
CLK3-201ENST00000345005 RRP9O43818 475 aaKnown RBP15.49■□□□□ 0.07
CLK3-201ENST00000345005 RPS6KA4O75676 772 aa15.49■□□□□ 0.07
CLK3-201ENST00000345005 LRRC24Q50LG9 513 aa15.49■□□□□ 0.07
CLK3-201ENST00000345005 RUFY2Q8WXA3 655 aa15.49■□□□□ 0.07
CLK3-201ENST00000345005 CEP126Q9P2H0 1117 aa15.49■□□□□ 0.07
CLK3-201ENST00000345005 DBNLQ9UJU6 430 aaKnown RBP15.49■□□□□ 0.07
CLK3-201ENST00000345005 NIP7Q9Y221 180 aaKnown RBP eCLIP15.49■□□□□ 0.07
CLK3-201ENST00000345005 DDX60Q8IY21 1712 aaKnown RBP15.49■□□□□ 0.07
CLK3-201ENST00000345005 HIP1O00291 1037 aa15.48■□□□□ 0.07
CLK3-201ENST00000345005 DDIT3P35638 169 aa15.48■□□□□ 0.07
CLK3-201ENST00000345005 KCNQ4P56696 695 aa15.48■□□□□ 0.07
CLK3-201ENST00000345005 FAM196AQ6ZSG2 479 aa15.48■□□□□ 0.07
CLK3-201ENST00000345005 UPF1Q92900 1129 aaKnown RBP eCLIP15.48■□□□□ 0.07
CLK3-201ENST00000345005 SCN7AQ01118 1682 aa15.48■□□□□ 0.07
CLK3-201ENST00000345005 GOLGA6L22H0YM25 854 aa15.47■□□□□ 0.07
CLK3-201ENST00000345005 RRAGDQ9NQL2 400 aaPredicted RBP15.47■□□□□ 0.07
CLK3-201ENST00000345005 AKAP2Q9Y2D5 859 aa15.47■□□□□ 0.07
CLK3-201ENST00000345005 ITGA6P23229 1130 aa15.47■□□□□ 0.07
CLK3-201ENST00000345005 RABEP1Q15276 862 aa15.47■□□□□ 0.07
CLK3-201ENST00000345005 DBNDD2Q9BQY9 259 aa15.47■□□□□ 0.07
CLK3-201ENST00000345005 PUS3Q9BZE2 481 aaKnown RBP15.47■□□□□ 0.07
CLK3-201ENST00000345005 BOLA2Q9H3K6 86 aa15.47■□□□□ 0.07
CLK3-201ENST00000345005 GREM2Q9H772 168 aa15.47■□□□□ 0.07
CLK3-201ENST00000345005 GRPEL1Q9HAV7 217 aa15.47■□□□□ 0.07
CLK3-201ENST00000345005 DIAPH3Q9NSV4 1193 aa15.47■□□□□ 0.07
CLK3-201ENST00000345005 SGSM2O43147 1006 aa15.46■□□□□ 0.07
CLK3-201ENST00000345005 MCCP23508 829 aa15.46■□□□□ 0.07
CLK3-201ENST00000345005 KRT27Q7Z3Y8 459 aa15.46■□□□□ 0.07
CLK3-201ENST00000345005 NEUROD6Q96NK8 337 aa15.46■□□□□ 0.07
CLK3-201ENST00000345005 CCDC85AQ96PX6 553 aaPredicted RBP15.46■□□□□ 0.07
CLK3-201ENST00000345005 ANO2Q9NQ90 1003 aa15.46■□□□□ 0.07
CLK3-201ENST00000345005 C4BP0C0L5 1744 aa15.46■□□□□ 0.06
CLK3-201ENST00000345005 LDHAL6AQ6ZMR3 332 aa15.45■□□□□ 0.06
CLK3-201ENST00000345005 NARFQ9UHQ1 456 aa15.45■□□□□ 0.06
CLK3-201ENST00000345005 RTCBQ9Y3I0 505 aaKnown RBP15.45■□□□□ 0.06
CLK3-201ENST00000345005 ZNF609O15014 1411 aa15.45■□□□□ 0.06
CLK3-201ENST00000345005 GNPATO15228 680 aa15.45■□□□□ 0.06
CLK3-201ENST00000345005 NTSR2O95665 410 aa15.45■□□□□ 0.06
CLK3-201ENST00000345005 RIPOR2Q9Y4F9 1068 aa15.45■□□□□ 0.06
CLK3-201ENST00000345005 CASZ1Q86V15 1759 aa15.44■□□□□ 0.06
CLK3-201ENST00000345005 FAM177BA6PVY3 158 aa15.44■□□□□ 0.06
CLK3-201ENST00000345005 HCLS1P14317 486 aaPredicted RBP15.44■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 127.7 ms