RNA–Protein interactions for RNA: ENST00000342785.8

VCAN-202, Transcript of versican, humanhuman

TSL 1 (best) BASIC

Gene VCAN, Length 7,154 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-202ENST00000342785 ARHGAP29Q52LW3 1261 aa8.35□□□□□ -1.07
VCAN-202ENST00000342785 SIRT2Q8IXJ6 389 aa8.35□□□□□ -1.07
VCAN-202ENST00000342785 RNF41Q9H4P4 317 aaPredicted RBP8.35□□□□□ -1.07
VCAN-202ENST00000342785 PALD1Q9ULE6 856 aa8.35□□□□□ -1.07
VCAN-202ENST00000342785 METAP2P50579 478 aaKnown RBP eCLIP8.35□□□□□ -1.07
VCAN-202ENST00000342785 EIF4A1P60842 406 aaKnown RBP8.35□□□□□ -1.07
VCAN-202ENST00000342785 SOGA3Q5TF21 947 aa8.35□□□□□ -1.07
VCAN-202ENST00000342785 ISM2Q6H9L7 571 aa8.35□□□□□ -1.07
VCAN-202ENST00000342785 CTCFLQ8NI51 663 aaPredicted RBP8.35□□□□□ -1.07
VCAN-202ENST00000342785 DCAF5Q96JK2 942 aa8.35□□□□□ -1.07
VCAN-202ENST00000342785 PAG1Q9NWQ8 432 aa8.35□□□□□ -1.07
VCAN-202ENST00000342785 URI1O94763 535 aaPredicted RBP8.35□□□□□ -1.07
VCAN-202ENST00000342785 CD2BP2O95400 341 aaKnown RBP8.35□□□□□ -1.07
VCAN-202ENST00000342785 GSDMDP57764 484 aa8.35□□□□□ -1.07
VCAN-202ENST00000342785 TTF1Q15361 905 aaPredicted RBP8.35□□□□□ -1.07
VCAN-202ENST00000342785 ZNF790Q6PG37 636 aa8.35□□□□□ -1.07
VCAN-202ENST00000342785 DHX32Q7L7V1 743 aaKnown RBP8.35□□□□□ -1.07
VCAN-202ENST00000342785 IQCA1Q86XH1 822 aa8.35□□□□□ -1.07
VCAN-202ENST00000342785 GAS2L3Q86XJ1 694 aa8.35□□□□□ -1.07
VCAN-202ENST00000342785 MRPS27Q92552 414 aaKnown RBP8.35□□□□□ -1.07
VCAN-202ENST00000342785 ORAI2Q96SN7 254 aa8.35□□□□□ -1.07
VCAN-202ENST00000342785 C19orf44Q9H6X5 657 aa8.35□□□□□ -1.07
VCAN-202ENST00000342785 YEATS2Q9ULM3 1422 aa8.35□□□□□ -1.07
VCAN-202ENST00000342785 MYOM2P54296 1465 aa8.35□□□□□ -1.07
VCAN-202ENST00000342785 EXOC5O00471 708 aa8.34□□□□□ -1.07
VCAN-202ENST00000342785 IKQ13123 557 aaPredicted RBP8.34□□□□□ -1.07
VCAN-202ENST00000342785 TMC6Q7Z403 805 aa8.34□□□□□ -1.07
VCAN-202ENST00000342785 FAM227BQ96M60 508 aa8.34□□□□□ -1.07
VCAN-202ENST00000342785 DBNDD2Q9BQY9 259 aa8.34□□□□□ -1.07
VCAN-202ENST00000342785 TMEM63CQ9P1W3 806 aa8.34□□□□□ -1.07
VCAN-202ENST00000342785 TIMM10P62072 90 aa8.34□□□□□ -1.07
VCAN-202ENST00000342785 CBX1P83916 185 aa8.34□□□□□ -1.07
VCAN-202ENST00000342785 CCDC102BQ68D86 513 aa8.34□□□□□ -1.07
VCAN-202ENST00000342785 RUFY1Q96T51 708 aa8.34□□□□□ -1.07
VCAN-202ENST00000342785 CAVIN4Q5BKX8 364 aa8.34□□□□□ -1.07
VCAN-202ENST00000342785 CHST3Q7LGC8 479 aa8.34□□□□□ -1.07
VCAN-202ENST00000342785 ERCC4Q92889 916 aaPredicted RBP8.34□□□□□ -1.07
VCAN-202ENST00000342785 TMEM2Q9UHN6 1383 aa8.34□□□□□ -1.07
VCAN-202ENST00000342785 ZSCAN12O43309 604 aa8.34□□□□□ -1.07
VCAN-202ENST00000342785 ATP2B2Q01814 1243 aa8.34□□□□□ -1.07
VCAN-202ENST00000342785 SLC9C2Q5TAH2 1124 aa8.34□□□□□ -1.07
VCAN-202ENST00000342785 PRDM15P57071 1507 aaPredicted RBP8.34□□□□□ -1.07
VCAN-202ENST00000342785 SSRP1Q08945 709 aaKnown RBP8.34□□□□□ -1.07
VCAN-202ENST00000342785 CCDC66A2RUB6 948 aa8.34□□□□□ -1.07
VCAN-202ENST00000342785 EPB41L2O43491 1005 aaKnown RBP8.34□□□□□ -1.07
VCAN-202ENST00000342785 APOBRQ0VD83 1088 aa8.34□□□□□ -1.07
VCAN-202ENST00000342785 SKILP12757 684 aa8.33□□□□□ -1.08
VCAN-202ENST00000342785 AATKQ6ZMQ8 1374 aa8.33□□□□□ -1.08
VCAN-202ENST00000342785 PTPDC1A2A3K4 754 aa8.33□□□□□ -1.08
VCAN-202ENST00000342785 KCNG4Q8TDN1 519 aa8.33□□□□□ -1.08
VCAN-202ENST00000342785 CHAMP1Q96JM3 812 aa8.33□□□□□ -1.08
VCAN-202ENST00000342785 SLC26A6Q9BXS9 759 aa8.33□□□□□ -1.08
VCAN-202ENST00000342785 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP8.33□□□□□ -1.08
VCAN-202ENST00000342785 METP08581 1390 aa8.33□□□□□ -1.08
VCAN-202ENST00000342785 ADGBQ8N7X0 1667 aa8.33□□□□□ -1.08
VCAN-202ENST00000342785 KCNQ3O43525 872 aa8.33□□□□□ -1.08
VCAN-202ENST00000342785 PRC1O43663 620 aa8.33□□□□□ -1.08
VCAN-202ENST00000342785 EPS15P42566 896 aa8.33□□□□□ -1.08
VCAN-202ENST00000342785 SUCLG2Q96I99 432 aa8.33□□□□□ -1.08
VCAN-202ENST00000342785 RNF113AO15541 343 aaKnown RBP8.33□□□□□ -1.08
VCAN-202ENST00000342785 GADD45BO75293 160 aaPredicted RBP8.33□□□□□ -1.08
VCAN-202ENST00000342785 UQCRFS1P1P0C7P4 283 aa8.33□□□□□ -1.08
VCAN-202ENST00000342785 TCEAL9Q9UHQ7 104 aa8.33□□□□□ -1.08
VCAN-202ENST00000342785 ZNF652Q9Y2D9 606 aa8.33□□□□□ -1.08
VCAN-202ENST00000342785 ZBTB43O43298 467 aa8.33□□□□□ -1.08
VCAN-202ENST00000342785 SYKP43405 635 aa8.33□□□□□ -1.08
VCAN-202ENST00000342785 MFSD6Q6ZSS7 791 aa8.33□□□□□ -1.08
VCAN-202ENST00000342785 ZNF496Q96IT1 587 aaPredicted RBP8.33□□□□□ -1.08
VCAN-202ENST00000342785 ALG1Q9BT22 464 aa8.33□□□□□ -1.08
VCAN-202ENST00000342785 KRT18P05783 430 aaKnown RBP8.33□□□□□ -1.08
VCAN-202ENST00000342785 LUZP1Q86V48 1076 aa8.33□□□□□ -1.08
VCAN-202ENST00000342785 CCDC43Q96MW1 224 aaKnown RBP8.33□□□□□ -1.08
VCAN-202ENST00000342785 SSBP05455 408 aaKnown RBP eCLIP8.32□□□□□ -1.08
VCAN-202ENST00000342785 CPLX3Q8WVH0 158 aa8.32□□□□□ -1.08
VCAN-202ENST00000342785 SLC27A2O14975 620 aa8.32□□□□□ -1.08
VCAN-202ENST00000342785 ERLIN1O75477 346 aa8.32□□□□□ -1.08
VCAN-202ENST00000342785 TMCO3Q6UWJ1 677 aa8.32□□□□□ -1.08
VCAN-202ENST00000342785 AK7Q96M32 723 aa8.32□□□□□ -1.08
VCAN-202ENST00000342785 METTL22Q9BUU2 404 aaPredicted RBP8.32□□□□□ -1.08
VCAN-202ENST00000342785 NEO1Q92859 1461 aa8.32□□□□□ -1.08
VCAN-202ENST00000342785 MARCKSP29966 332 aaPredicted RBP8.32□□□□□ -1.08
VCAN-202ENST00000342785 EIF5P55010 431 aaKnown RBP8.32□□□□□ -1.08
VCAN-202ENST00000342785 SPTLC2O15270 562 aa8.32□□□□□ -1.08
VCAN-202ENST00000342785 CCDC129Q6ZRS4 1044 aa8.32□□□□□ -1.08
VCAN-202ENST00000342785 PRDM10Q9NQV6 1147 aa8.32□□□□□ -1.08
VCAN-202ENST00000342785 GCKRQ14397 625 aa8.32□□□□□ -1.08
VCAN-202ENST00000342785 EYA2O00167 538 aa8.31□□□□□ -1.08
VCAN-202ENST00000342785 TNNI3KQ59H18 835 aa8.31□□□□□ -1.08
VCAN-202ENST00000342785 EAF2Q96CJ1 260 aaPredicted RBP8.31□□□□□ -1.08
VCAN-202ENST00000342785 TM6SF1Q9BZW5 370 aa8.31□□□□□ -1.08
VCAN-202ENST00000342785 DEF6Q9H4E7 631 aa8.31□□□□□ -1.08
VCAN-202ENST00000342785 ZHX3Q9H4I2 956 aa8.31□□□□□ -1.08
VCAN-202ENST00000342785 MKNK2Q9HBH9 465 aa8.31□□□□□ -1.08
VCAN-202ENST00000342785 IQSEC3Q9UPP2 1182 aaPredicted RBP8.31□□□□□ -1.08
VCAN-202ENST00000342785 FPGT-TNNI3KV9GXZ4 949 aa8.31□□□□□ -1.08
VCAN-202ENST00000342785 PTGS1P23219 599 aa8.31□□□□□ -1.08
VCAN-202ENST00000342785 RPS6KB1P23443 525 aa8.31□□□□□ -1.08
VCAN-202ENST00000342785 AOPEPQ8N6M6 819 aa8.31□□□□□ -1.08
VCAN-202ENST00000342785 OSBPL3Q9H4L5 887 aa8.31□□□□□ -1.08
VCAN-202ENST00000342785 CTDP1Q9Y5B0 961 aaPredicted RBP8.31□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 59.5 ms