RNA–Protein interactions for RNA: ENST00000341423.9

HMGB1-203, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGB1, Length 5,485 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-203ENST00000341423 DOK7Q18PE1 504 aa9.89□□□□□ -0.83
HMGB1-203ENST00000341423 TTLL5Q6EMB2 1281 aa9.89□□□□□ -0.83
HMGB1-203ENST00000341423 NACA2Q9H009 215 aa9.89□□□□□ -0.83
HMGB1-203ENST00000341423 ANO2Q9NQ90 1003 aa9.89□□□□□ -0.83
HMGB1-203ENST00000341423 TCP10L2B9ZVM9 353 aa9.89□□□□□ -0.83
HMGB1-203ENST00000341423 EPHX2P34913 555 aa9.89□□□□□ -0.83
HMGB1-203ENST00000341423 ZYXQ15942 572 aaKnown RBP9.89□□□□□ -0.83
HMGB1-203ENST00000341423 RNF169Q8NCN4 708 aa9.89□□□□□ -0.83
HMGB1-203ENST00000341423 TCHPQ9BT92 498 aa9.89□□□□□ -0.83
HMGB1-203ENST00000341423 STX8Q9UNK0 236 aa9.89□□□□□ -0.83
HMGB1-203ENST00000341423 IQSEC3Q9UPP2 1182 aaPredicted RBP9.89□□□□□ -0.83
HMGB1-203ENST00000341423 SYNE4Q8N205 404 aa9.89□□□□□ -0.83
HMGB1-203ENST00000341423 HCN4Q9Y3Q4 1203 aa9.89□□□□□ -0.83
HMGB1-203ENST00000341423 YTHDC2Q9H6S0 1430 aaKnown RBP9.89□□□□□ -0.83
HMGB1-203ENST00000341423 TMEM88BA6NKF7 163 aa9.89□□□□□ -0.83
HMGB1-203ENST00000341423 GNAI2P04899 355 aa9.89□□□□□ -0.83
HMGB1-203ENST00000341423 RPS8P62241 208 aaKnown RBP9.89□□□□□ -0.83
HMGB1-203ENST00000341423 NONOQ15233 471 aaKnown RBP eCLIP9.89□□□□□ -0.83
HMGB1-203ENST00000341423 TEX11Q8IYF3 940 aa9.89□□□□□ -0.83
HMGB1-203ENST00000341423 TTF2Q9UNY4 1162 aaKnown RBP9.89□□□□□ -0.83
HMGB1-203ENST00000341423 BAG4O95429 457 aaKnown RBP9.88□□□□□ -0.83
HMGB1-203ENST00000341423 GBA2Q9HCG7 927 aaPredicted RBP9.88□□□□□ -0.83
HMGB1-203ENST00000341423 ADGRF5Q8IZF2 1346 aa9.88□□□□□ -0.83
HMGB1-203ENST00000341423 PABPN1LA6NDY0 278 aaKnown RBP9.88□□□□□ -0.83
HMGB1-203ENST00000341423 ANKRD35Q8N283 1001 aa9.88□□□□□ -0.83
HMGB1-203ENST00000341423 PARK7Q99497 189 aaKnown RBP9.88□□□□□ -0.83
HMGB1-203ENST00000341423 PTPDC1A2A3K4 754 aa9.88□□□□□ -0.83
HMGB1-203ENST00000341423 COPS6Q7L5N1 327 aa9.88□□□□□ -0.83
HMGB1-203ENST00000341423 UBE3BQ7Z3V4 1068 aa9.88□□□□□ -0.83
HMGB1-203ENST00000341423 BSDC1Q9NW68 430 aaPredicted RBP9.88□□□□□ -0.83
HMGB1-203ENST00000341423 WDR17Q8IZU2 1322 aa9.88□□□□□ -0.83
HMGB1-203ENST00000341423 NINLQ9Y2I6 1382 aa9.88□□□□□ -0.83
HMGB1-203ENST00000341423 REM2Q8IYK8 340 aaPredicted RBP9.88□□□□□ -0.83
HMGB1-203ENST00000341423 RTEL1Q9NZ71 1219 aa9.88□□□□□ -0.83
HMGB1-203ENST00000341423 MYO3BQ8WXR4 1341 aa9.88□□□□□ -0.83
HMGB1-203ENST00000341423 NBPF26B4DH59 902 aa9.87□□□□□ -0.83
HMGB1-203ENST00000341423 SMARCC2Q8TAQ2 1214 aa9.87□□□□□ -0.83
HMGB1-203ENST00000341423 CCDC12Q8WUD4 166 aaPredicted RBP9.87□□□□□ -0.83
HMGB1-203ENST00000341423 KIAA1107Q9UPP5 1409 aa9.87□□□□□ -0.83
HMGB1-203ENST00000341423 APAF1O14727 1248 aa9.87□□□□□ -0.83
HMGB1-203ENST00000341423 USP14P54578 494 aa9.87□□□□□ -0.83
HMGB1-203ENST00000341423 POTEAQ6S8J7 498 aa9.87□□□□□ -0.83
HMGB1-203ENST00000341423 NSMFQ6X4W1 530 aa9.87□□□□□ -0.83
HMGB1-203ENST00000341423 EMILIN1Q9Y6C2 1016 aa9.87□□□□□ -0.83
HMGB1-203ENST00000341423 SPATA31A3Q5VYP0 1347 aa9.87□□□□□ -0.83
HMGB1-203ENST00000341423 ATP2B1P20020 1258 aa9.87□□□□□ -0.83
HMGB1-203ENST00000341423 FASTKD5Q7L8L6 764 aaKnown RBP9.87□□□□□ -0.83
HMGB1-203ENST00000341423 CNTROBQ8N137 903 aa9.87□□□□□ -0.83
HMGB1-203ENST00000341423 SPATA32Q96LK8 384 aa9.87□□□□□ -0.83
HMGB1-203ENST00000341423 GPATCH8Q9UKJ3 1502 aaKnown RBP9.87□□□□□ -0.83
HMGB1-203ENST00000341423 TSPY3P0CV98 308 aa9.87□□□□□ -0.83
HMGB1-203ENST00000341423 TSPY8P0CW00 308 aa9.87□□□□□ -0.83
HMGB1-203ENST00000341423 OVOS2A0A0G2JMS6 1433 aa9.87□□□□□ -0.83
HMGB1-203ENST00000341423 OVOS2A0A0J9YW53 1432 aa9.87□□□□□ -0.83
HMGB1-203ENST00000341423 OVOS2Q6IE36 1432 aa9.87□□□□□ -0.83
HMGB1-203ENST00000341423 POTEJP0CG39 1038 aa9.86□□□□□ -0.83
HMGB1-203ENST00000341423 CHST3Q7LGC8 479 aa9.86□□□□□ -0.83
HMGB1-203ENST00000341423 PDILTQ8N807 584 aa9.86□□□□□ -0.83
HMGB1-203ENST00000341423 PUF60Q9UHX1 559 aaKnown RBP9.86□□□□□ -0.83
HMGB1-203ENST00000341423 SHANK2Q9UPX8 1470 aa9.86□□□□□ -0.83
HMGB1-203ENST00000341423 NUCB2P80303 420 aa9.86□□□□□ -0.83
HMGB1-203ENST00000341423 RIMBP3CA6NJZ7 1639 aa9.86□□□□□ -0.83
HMGB1-203ENST00000341423 RIMBP3BA6NNM3 1639 aa9.86□□□□□ -0.83
HMGB1-203ENST00000341423 RIMBP3Q9UFD9 1639 aa9.86□□□□□ -0.83
HMGB1-203ENST00000341423 FKTNO75072 461 aa9.86□□□□□ -0.83
HMGB1-203ENST00000341423 RPS6KA4O75676 772 aa9.86□□□□□ -0.83
HMGB1-203ENST00000341423 NLRP5P59047 1200 aa9.86□□□□□ -0.83
HMGB1-203ENST00000341423 TCP10Q12799 353 aa9.86□□□□□ -0.83
HMGB1-203ENST00000341423 RGS22Q8NE09 1264 aa9.86□□□□□ -0.83
HMGB1-203ENST00000341423 FLT4P35916 1363 aa9.86□□□□□ -0.83
HMGB1-203ENST00000341423 DNM2P50570 870 aa9.86□□□□□ -0.83
HMGB1-203ENST00000341423 CPXCR1Q8N123 301 aa9.86□□□□□ -0.83
HMGB1-203ENST00000341423 HSP90AA2PQ14568 343 aaPredicted RBP9.86□□□□□ -0.83
HMGB1-203ENST00000341423 AAK1Q2M2I8 961 aa9.86□□□□□ -0.83
HMGB1-203ENST00000341423 DPYSL4O14531 572 aa9.85□□□□□ -0.83
HMGB1-203ENST00000341423 RAB34Q9BZG1 259 aa9.85□□□□□ -0.83
HMGB1-203ENST00000341423 GOPCQ9HD26 462 aa9.85□□□□□ -0.83
HMGB1-203ENST00000341423 ZNF277Q9NRM2 450 aaPredicted RBP9.85□□□□□ -0.83
HMGB1-203ENST00000341423 TPM1P09493 284 aa9.85□□□□□ -0.83
HMGB1-203ENST00000341423 C1QTNF8P60827 252 aa9.85□□□□□ -0.83
HMGB1-203ENST00000341423 XAGE3Q8WTP9 111 aa9.85□□□□□ -0.83
HMGB1-203ENST00000341423 PIBF1Q8WXW3 757 aa9.85□□□□□ -0.83
HMGB1-203ENST00000341423 DENND2AQ9ULE3 1009 aa9.85□□□□□ -0.83
HMGB1-203ENST00000341423 PLEKHG1Q9ULL1 1385 aa9.85□□□□□ -0.83
HMGB1-203ENST00000341423 SRGAP3O43295 1099 aa9.85□□□□□ -0.83
HMGB1-203ENST00000341423 SP4Q02446 784 aa9.85□□□□□ -0.83
HMGB1-203ENST00000341423 KAT14Q9H8E8 782 aa9.85□□□□□ -0.83
HMGB1-203ENST00000341423 NOL7Q9UMY1 257 aaKnown RBP9.85□□□□□ -0.83
HMGB1-203ENST00000341423 HCLS1P14317 486 aaPredicted RBP9.85□□□□□ -0.83
HMGB1-203ENST00000341423 ATXN3P54252 364 aaPredicted RBP9.85□□□□□ -0.83
HMGB1-203ENST00000341423 ANKRD45Q5TZF3 282 aa9.85□□□□□ -0.83
HMGB1-203ENST00000341423 MCM10Q7L590 875 aa9.85□□□□□ -0.83
HMGB1-203ENST00000341423 PALLDQ8WX93 1383 aa9.84□□□□□ -0.83
HMGB1-203ENST00000341423 CYP7A1P22680 504 aa9.84□□□□□ -0.83
HMGB1-203ENST00000341423 ELF1P32519 619 aa9.84□□□□□ -0.83
HMGB1-203ENST00000341423 KIF5BP33176 963 aa9.84□□□□□ -0.83
HMGB1-203ENST00000341423 CRKLP46109 303 aaKnown RBP9.84□□□□□ -0.83
HMGB1-203ENST00000341423 ARRDC4Q8NCT1 418 aa9.84□□□□□ -0.83
HMGB1-203ENST00000341423 GCNAQ96QF7 691 aa9.84□□□□□ -0.83
HMGB1-203ENST00000341423 CFAP74Q9C0B2 1584 aa9.84□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms