RNA–Protein interactions for RNA: ENST00000341060.3

TDP2-201, Transcript of tyrosyl-DNA phosphodiesterase 2, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TDP2, Length 2,120 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP2-201ENST00000341060 DBNLQ9UJU6 430 aaKnown RBP17.39■□□□□ 0.37
TDP2-201ENST00000341060 SOS2Q07890 1332 aaPredicted RBP17.38■□□□□ 0.37
TDP2-201ENST00000341060 FIBPO43427 364 aa17.38■□□□□ 0.37
TDP2-201ENST00000341060 ZNF500O60304 480 aaPredicted RBP17.38■□□□□ 0.37
TDP2-201ENST00000341060 ANKRD1Q15327 319 aa17.38■□□□□ 0.37
TDP2-201ENST00000341060 TSGA10IPQ3SY00 556 aa17.38■□□□□ 0.37
TDP2-201ENST00000341060 TNNI3KQ59H18 835 aa17.38■□□□□ 0.37
TDP2-201ENST00000341060 ZNF589Q86UQ0 364 aaPredicted RBP17.38■□□□□ 0.37
TDP2-201ENST00000341060 FPGT-TNNI3KV9GXZ4 949 aa17.38■□□□□ 0.37
TDP2-201ENST00000341060 CPDO75976 1380 aa17.38■□□□□ 0.37
TDP2-201ENST00000341060 MCM5P33992 734 aa17.38■□□□□ 0.37
TDP2-201ENST00000341060 BLOC1S2Q6QNY1 142 aa17.38■□□□□ 0.37
TDP2-201ENST00000341060 UBE3BQ7Z3V4 1068 aa17.38■□□□□ 0.37
TDP2-201ENST00000341060 DDX54Q8TDD1 881 aaKnown RBP17.38■□□□□ 0.37
TDP2-201ENST00000341060 CCDC39Q9UFE4 941 aa17.38■□□□□ 0.37
TDP2-201ENST00000341060 ZKSCAN5Q9Y2L8 839 aa17.38■□□□□ 0.37
TDP2-201ENST00000341060 OFD1O75665 1012 aa17.37■□□□□ 0.37
TDP2-201ENST00000341060 PIP4K2AP48426 406 aaPredicted RBP17.37■□□□□ 0.37
TDP2-201ENST00000341060 PAPPAQ13219 1627 aa17.37■□□□□ 0.37
TDP2-201ENST00000341060 RPS6KB1P23443 525 aa17.36■□□□□ 0.37
TDP2-201ENST00000341060 DNM1Q05193 864 aaKnown RBP17.36■□□□□ 0.37
TDP2-201ENST00000341060 TFCP2Q12800 502 aa17.36■□□□□ 0.37
TDP2-201ENST00000341060 COL9A3Q14050 684 aaPredicted RBP17.36■□□□□ 0.37
TDP2-201ENST00000341060 CHRNA2Q15822 529 aa17.36■□□□□ 0.37
TDP2-201ENST00000341060 USPL1Q5W0Q7 1092 aa17.36■□□□□ 0.37
TDP2-201ENST00000341060 NECAB1Q8N987 351 aa17.36■□□□□ 0.37
TDP2-201ENST00000341060 PLBD2Q8NHP8 589 aa17.36■□□□□ 0.37
TDP2-201ENST00000341060 TAF5LO75529 589 aa17.36■□□□□ 0.37
TDP2-201ENST00000341060 UVSSAQ2YD98 709 aa17.36■□□□□ 0.37
TDP2-201ENST00000341060 PDZRN4Q6ZMN7 1036 aaPredicted RBP17.36■□□□□ 0.37
TDP2-201ENST00000341060 A0A087WZG4 1122 aa17.35■□□□□ 0.37
TDP2-201ENST00000341060 VPS37CA5D8V6 355 aaPredicted RBP17.35■□□□□ 0.37
TDP2-201ENST00000341060 CASP7P55210 303 aa17.35■□□□□ 0.37
TDP2-201ENST00000341060 CABP4P57796 275 aa17.35■□□□□ 0.37
TDP2-201ENST00000341060 EDC3Q96F86 508 aaKnown RBP17.35■□□□□ 0.37
TDP2-201ENST00000341060 TOB2Q14106 344 aaPredicted RBP17.35■□□□□ 0.37
TDP2-201ENST00000341060 JARID2Q92833 1246 aaPredicted RBP17.35■□□□□ 0.37
TDP2-201ENST00000341060 TAF6LQ9Y6J9 622 aa17.35■□□□□ 0.37
TDP2-201ENST00000341060 MYH15Q9Y2K3 1946 aa17.34■□□□□ 0.37
TDP2-201ENST00000341060 ZNF609O15014 1411 aa17.34■□□□□ 0.37
TDP2-201ENST00000341060 PDCP20941 246 aa17.34■□□□□ 0.37
TDP2-201ENST00000341060 LARP1BQ659C4 914 aaKnown RBP17.34■□□□□ 0.37
TDP2-201ENST00000341060 ATP5J2-PTCD1G3V325 749 aa17.33■□□□□ 0.37
TDP2-201ENST00000341060 PTCD1O75127 700 aaKnown RBP17.33■□□□□ 0.37
TDP2-201ENST00000341060 KRT32Q14532 448 aa17.33■□□□□ 0.37
TDP2-201ENST00000341060 SHANK3Q9BYB0 1731 aa17.33■□□□□ 0.36
TDP2-201ENST00000341060 DTNBO60941 627 aa17.33■□□□□ 0.36
TDP2-201ENST00000341060 TCEANC2Q96MN5 208 aa17.33■□□□□ 0.36
TDP2-201ENST00000341060 HAUS7Q99871 368 aa17.33■□□□□ 0.36
TDP2-201ENST00000341060 SPEF2Q9C093 1822 aa17.32■□□□□ 0.36
TDP2-201ENST00000341060 ROBO1Q9Y6N7 1651 aa17.32■□□□□ 0.36
TDP2-201ENST00000341060 TPM2P07951 284 aa17.32■□□□□ 0.36
TDP2-201ENST00000341060 PIP4K2BP78356 416 aa17.32■□□□□ 0.36
TDP2-201ENST00000341060 CDC37L1Q7L3B6 337 aa17.32■□□□□ 0.36
TDP2-201ENST00000341060 DBNDD2Q9BQY9 259 aa17.32■□□□□ 0.36
TDP2-201ENST00000341060 ELP1O95163 1332 aa17.32■□□□□ 0.36
TDP2-201ENST00000341060 KCPQ6ZWJ8 1503 aa17.31■□□□□ 0.36
TDP2-201ENST00000341060 KRT85P78386 507 aa17.31■□□□□ 0.36
TDP2-201ENST00000341060 FUCA2Q9BTY2 467 aa17.31■□□□□ 0.36
TDP2-201ENST00000341060 HCLS1P14317 486 aaPredicted RBP17.3■□□□□ 0.36
TDP2-201ENST00000341060 LMBR1LQ6UX01 489 aa17.3■□□□□ 0.36
TDP2-201ENST00000341060 DNAJC2Q99543 621 aaKnown RBP17.3■□□□□ 0.36
TDP2-201ENST00000341060 NDUFB9Q9Y6M9 179 aa17.3■□□□□ 0.36
TDP2-201ENST00000341060 PCDH11XQ9BZA7 1347 aa17.3■□□□□ 0.36
TDP2-201ENST00000341060 PCDH11YQ9BZA8 1340 aa17.3■□□□□ 0.36
TDP2-201ENST00000341060 PALLDQ8WX93 1383 aa17.3■□□□□ 0.36
TDP2-201ENST00000341060 NBPF26B4DH59 902 aa17.3■□□□□ 0.36
TDP2-201ENST00000341060 H7C1W4 665 aa17.3■□□□□ 0.36
TDP2-201ENST00000341060 TERF1P54274 439 aa17.3■□□□□ 0.36
TDP2-201ENST00000341060 FOXO4P98177 505 aa17.3■□□□□ 0.36
TDP2-201ENST00000341060 MCMDC2Q4G0Z9 681 aa17.3■□□□□ 0.36
TDP2-201ENST00000341060 NBPF14Q5TI25 921 aa17.3■□□□□ 0.36
TDP2-201ENST00000341060 NBPF10Q6P3W6 841 aaKnown RBP17.3■□□□□ 0.36
TDP2-201ENST00000341060 NBPF15Q8N660 670 aa17.3■□□□□ 0.36
TDP2-201ENST00000341060 U3KPZ7 1027 aaPredicted RBP17.3■□□□□ 0.36
TDP2-201ENST00000341060 SH3TC1Q8TE82 1336 aa17.3■□□□□ 0.36
TDP2-201ENST00000341060 NHSL1Q5SYE7 1610 aa17.3■□□□□ 0.36
TDP2-201ENST00000341060 TPRNQ4KMQ1 711 aa17.29■□□□□ 0.36
TDP2-201ENST00000341060 TTC6Q86TZ1 520 aa17.29■□□□□ 0.36
TDP2-201ENST00000341060 KBTBD3Q8NAB2 608 aa17.29■□□□□ 0.36
TDP2-201ENST00000341060 NEK1Q96PY6 1258 aa17.29■□□□□ 0.36
TDP2-201ENST00000341060 USP25Q9UHP3 1055 aa17.29■□□□□ 0.36
TDP2-201ENST00000341060 ABCA3Q99758 1704 aa17.28■□□□□ 0.36
TDP2-201ENST00000341060 WDR17Q8IZU2 1322 aa17.28■□□□□ 0.36
TDP2-201ENST00000341060 PTMAP06454 111 aaKnown RBP17.28■□□□□ 0.36
TDP2-201ENST00000341060 ATG9AQ7Z3C6 839 aa17.28■□□□□ 0.36
TDP2-201ENST00000341060 GTF3C6Q969F1 213 aa17.28■□□□□ 0.36
TDP2-201ENST00000341060 TOM1O60784 492 aa17.27■□□□□ 0.36
TDP2-201ENST00000341060 GIMAP6Q6P9H5 292 aa17.27■□□□□ 0.36
TDP2-201ENST00000341060 DDX46Q7L014 1031 aaKnown RBP17.27■□□□□ 0.36
TDP2-201ENST00000341060 FERMT3Q86UX7 667 aa17.27■□□□□ 0.36
TDP2-201ENST00000341060 TICAM2Q86XR7 235 aa17.27■□□□□ 0.36
TDP2-201ENST00000341060 SEC62Q99442 399 aaKnown RBP17.27■□□□□ 0.36
TDP2-201ENST00000341060 GPR108Q9NPR9 543 aa17.27■□□□□ 0.36
TDP2-201ENST00000341060 CWC25Q9NXE8 425 aaPredicted RBP17.27■□□□□ 0.36
TDP2-201ENST00000341060 CYP21A2P08686 494 aa17.27■□□□□ 0.35
TDP2-201ENST00000341060 CCDC129Q6ZRS4 1044 aa17.27■□□□□ 0.35
TDP2-201ENST00000341060 SCAND2PQ9GZW5 306 aaPredicted RBP17.27■□□□□ 0.35
TDP2-201ENST00000341060 ERVV-2B6SEH9 535 aa17.26■□□□□ 0.35
TDP2-201ENST00000341060 CHGBP05060 677 aa17.26■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 48.5 ms