RNA–Protein interactions for RNA: ENST00000339872.8

HMGB1-202, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 2,319 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-202ENST00000339872 KIF2CQ99661 725 aa16.31■□□□□ 0.2
HMGB1-202ENST00000339872 TBC1D2Q9BYX2 928 aa16.31■□□□□ 0.2
HMGB1-202ENST00000339872 PUS3Q9BZE2 481 aaKnown RBP16.31■□□□□ 0.2
HMGB1-202ENST00000339872 PDE8AO60658 829 aa16.3■□□□□ 0.2
HMGB1-202ENST00000339872 PARP10Q53GL7 1025 aa16.3■□□□□ 0.2
HMGB1-202ENST00000339872 NIP7Q9Y221 180 aaKnown RBP eCLIP16.3■□□□□ 0.2
HMGB1-202ENST00000339872 DDX60Q8IY21 1712 aaKnown RBP16.3■□□□□ 0.2
HMGB1-202ENST00000339872 GREM2Q9H772 168 aa16.3■□□□□ 0.2
HMGB1-202ENST00000339872 LAMB2P55268 1798 aa16.3■□□□□ 0.2
HMGB1-202ENST00000339872 SH3TC1Q8TE82 1336 aa16.3■□□□□ 0.2
HMGB1-202ENST00000339872 ZNF609O15014 1411 aa16.29■□□□□ 0.2
HMGB1-202ENST00000339872 RC3H1Q5TC82 1133 aaKnown RBP16.29■□□□□ 0.2
HMGB1-202ENST00000339872 EVI5LQ96CN4 794 aa16.29■□□□□ 0.2
HMGB1-202ENST00000339872 DBNDD2Q9BQY9 259 aa16.29■□□□□ 0.2
HMGB1-202ENST00000339872 UTP14AQ9BVJ6 771 aaKnown RBP16.29■□□□□ 0.2
HMGB1-202ENST00000339872 BOLA2Q9H3K6 86 aa16.29■□□□□ 0.2
HMGB1-202ENST00000339872 ITGA6P23229 1130 aa16.29■□□□□ 0.2
HMGB1-202ENST00000339872 SMIM5Q71RC9 77 aa16.29■□□□□ 0.2
HMGB1-202ENST00000339872 C4BP0C0L5 1744 aa16.28■□□□□ 0.2
HMGB1-202ENST00000339872 GNPATO15228 680 aa16.28■□□□□ 0.2
HMGB1-202ENST00000339872 BCL11BQ9C0K0 894 aaPredicted RBP16.28■□□□□ 0.2
HMGB1-202ENST00000339872 ANO2Q9NQ90 1003 aa16.28■□□□□ 0.2
HMGB1-202ENST00000339872 FBXO3Q9UK99 471 aa16.28■□□□□ 0.2
HMGB1-202ENST00000339872 ANKRD18BA2A2Z9 1011 aa16.28■□□□□ 0.2
HMGB1-202ENST00000339872 NEUROD6Q96NK8 337 aa16.28■□□□□ 0.2
HMGB1-202ENST00000339872 IL25Q9H293 177 aa16.28■□□□□ 0.2
HMGB1-202ENST00000339872 GPR108Q9NPR9 543 aa16.28■□□□□ 0.2
HMGB1-202ENST00000339872 RPS6KA4O75676 772 aa16.27■□□□□ 0.2
HMGB1-202ENST00000339872 NTSR2O95665 410 aa16.27■□□□□ 0.2
HMGB1-202ENST00000339872 HCLS1P14317 486 aaPredicted RBP16.27■□□□□ 0.2
HMGB1-202ENST00000339872 CLEC4GQ6UXB4 293 aa16.27■□□□□ 0.2
HMGB1-202ENST00000339872 KRT27Q7Z3Y8 459 aa16.27■□□□□ 0.2
HMGB1-202ENST00000339872 HSCBQ8IWL3 235 aa16.27■□□□□ 0.2
HMGB1-202ENST00000339872 DIAPH3Q9NSV4 1193 aa16.27■□□□□ 0.2
HMGB1-202ENST00000339872 CEP126Q9P2H0 1117 aa16.27■□□□□ 0.2
HMGB1-202ENST00000339872 ATP5JP18859 108 aa16.27■□□□□ 0.19
HMGB1-202ENST00000339872 AK7Q96M32 723 aa16.27■□□□□ 0.19
HMGB1-202ENST00000339872 TIMM10P62072 90 aa16.26■□□□□ 0.19
HMGB1-202ENST00000339872 CWC27Q6UX04 472 aaKnown RBP16.26■□□□□ 0.19
HMGB1-202ENST00000339872 FAM196AQ6ZSG2 479 aa16.26■□□□□ 0.19
HMGB1-202ENST00000339872 SGSM2O43147 1006 aa16.25■□□□□ 0.19
HMGB1-202ENST00000339872 LDHAL6AQ6ZMR3 332 aa16.25■□□□□ 0.19
HMGB1-202ENST00000339872 RTCBQ9Y3I0 505 aaKnown RBP16.25■□□□□ 0.19
HMGB1-202ENST00000339872 C4AP0C0L4 1744 aa16.25■□□□□ 0.19
HMGB1-202ENST00000339872 RIC1Q4ADV7 1423 aa16.25■□□□□ 0.19
HMGB1-202ENST00000339872 A0A1B0GUL7 405 aa16.25■□□□□ 0.19
HMGB1-202ENST00000339872 LRP5O75197 1615 aa16.25■□□□□ 0.19
HMGB1-202ENST00000339872 CASZ1Q86V15 1759 aa16.24■□□□□ 0.19
HMGB1-202ENST00000339872 SPEF2Q9C093 1822 aa16.24■□□□□ 0.19
HMGB1-202ENST00000339872 USPL1Q5W0Q7 1092 aa16.24■□□□□ 0.19
HMGB1-202ENST00000339872 SNX21Q969T3 373 aa16.24■□□□□ 0.19
HMGB1-202ENST00000339872 FSD1Q9BTV5 496 aa16.24■□□□□ 0.19
HMGB1-202ENST00000339872 CNNM1Q9NRU3 951 aa16.24■□□□□ 0.19
HMGB1-202ENST00000339872 NARFQ9UHQ1 456 aa16.24■□□□□ 0.19
HMGB1-202ENST00000339872 MCCP23508 829 aa16.24■□□□□ 0.19
HMGB1-202ENST00000339872 ZNF772Q68DY9 489 aaPredicted RBP16.24■□□□□ 0.19
HMGB1-202ENST00000339872 BICDL1Q6ZP65 573 aa16.24■□□□□ 0.19
HMGB1-202ENST00000339872 RUFY2Q8WXA3 655 aa16.24■□□□□ 0.19
HMGB1-202ENST00000339872 DNAJC2Q99543 621 aaKnown RBP16.24■□□□□ 0.19
HMGB1-202ENST00000339872 ANP32EQ9BTT0 268 aa16.24■□□□□ 0.19
HMGB1-202ENST00000339872 SRP68Q9UHB9 627 aaKnown RBP16.24■□□□□ 0.19
HMGB1-202ENST00000339872 EP400Q96L91 3159 aa16.24■□□□□ 0.19
HMGB1-202ENST00000339872 HSP90B1P14625 803 aaKnown RBP16.23■□□□□ 0.19
HMGB1-202ENST00000339872 RABEP1Q15276 862 aa16.23■□□□□ 0.19
HMGB1-202ENST00000339872 METTL24Q5JXM2 366 aa16.23■□□□□ 0.19
HMGB1-202ENST00000339872 EDC3Q96F86 508 aaKnown RBP16.23■□□□□ 0.19
HMGB1-202ENST00000339872 AKAP2Q9Y2D5 859 aa16.23■□□□□ 0.19
HMGB1-202ENST00000339872 NDUFB9Q9Y6M9 179 aa16.23■□□□□ 0.19
HMGB1-202ENST00000339872 HIP1O00291 1037 aa16.23■□□□□ 0.19
HMGB1-202ENST00000339872 ZPR1O75312 459 aa16.23■□□□□ 0.19
HMGB1-202ENST00000339872 RBM6P78332 1123 aaKnown RBP16.23■□□□□ 0.19
HMGB1-202ENST00000339872 TBC1D9BQ66K14 1250 aa16.23■□□□□ 0.19
HMGB1-202ENST00000339872 AMIGO3Q86WK7 504 aa16.23■□□□□ 0.19
HMGB1-202ENST00000339872 BCL2L12Q9HB09 334 aa16.23■□□□□ 0.19
HMGB1-202ENST00000339872 RIPOR2Q9Y4F9 1068 aa16.23■□□□□ 0.19
HMGB1-202ENST00000339872 COL24A1Q17RW2 1714 aa16.23■□□□□ 0.19
HMGB1-202ENST00000339872 RGL2O15211 777 aa16.22■□□□□ 0.19
HMGB1-202ENST00000339872 TRIM37O94972 964 aa16.22■□□□□ 0.19
HMGB1-202ENST00000339872 HAUS7Q99871 368 aa16.22■□□□□ 0.19
HMGB1-202ENST00000339872 LRRC4BQ9NT99 713 aa16.22■□□□□ 0.19
HMGB1-202ENST00000339872 PHF14O94880 888 aa16.22■□□□□ 0.19
HMGB1-202ENST00000339872 CD2BP2O95400 341 aaKnown RBP16.22■□□□□ 0.19
HMGB1-202ENST00000339872 SLKQ9H2G2 1235 aaPredicted RBP16.22■□□□□ 0.19
HMGB1-202ENST00000339872 CCDC152Q4G0S7 254 aa16.21■□□□□ 0.19
HMGB1-202ENST00000339872 KIAA1211Q6ZU35 1233 aa16.21■□□□□ 0.19
HMGB1-202ENST00000339872 SPRYD3Q8NCJ5 442 aa16.21■□□□□ 0.19
HMGB1-202ENST00000339872 ARHGEF1Q92888 912 aaKnown RBP16.21■□□□□ 0.19
HMGB1-202ENST00000339872 RAD50Q92878 1312 aa16.21■□□□□ 0.18
HMGB1-202ENST00000339872 EPB41L2O43491 1005 aaKnown RBP16.2■□□□□ 0.18
HMGB1-202ENST00000339872 NMIQ13287 307 aaPredicted RBP16.2■□□□□ 0.18
HMGB1-202ENST00000339872 ERFEQ4G0M1 354 aa16.2■□□□□ 0.18
HMGB1-202ENST00000339872 GORABQ5T7V8 394 aa16.2■□□□□ 0.18
HMGB1-202ENST00000339872 ADORA1P30542 326 aa16.2■□□□□ 0.18
HMGB1-202ENST00000339872 ATP2B3Q16720 1220 aa16.2■□□□□ 0.18
HMGB1-202ENST00000339872 XAGE2Q96GT9 111 aa16.2■□□□□ 0.18
HMGB1-202ENST00000339872 FAM227BQ96M60 508 aa16.2■□□□□ 0.18
HMGB1-202ENST00000339872 LSG1Q9H089 658 aaKnown RBP16.2■□□□□ 0.18
HMGB1-202ENST00000339872 SEC31BQ9NQW1 1179 aa16.2■□□□□ 0.18
HMGB1-202ENST00000339872 UBR3Q6ZT12 1888 aa16.2■□□□□ 0.18
HMGB1-202ENST00000339872 DDX46Q7L014 1031 aaKnown RBP16.19■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms