RNA–Protein interactions for RNA: ENST00000332797.10

CCDC28A-201, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,496 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-201ENST00000332797 MYH3P11055 1940 aa20.07■□□□□ 0.8
CCDC28A-201ENST00000332797 PPEF1O14829 653 aaPredicted RBP20.07■□□□□ 0.8
CCDC28A-201ENST00000332797 CCDC152Q4G0S7 254 aa20.07■□□□□ 0.8
CCDC28A-201ENST00000332797 RCAN3Q9UKA8 241 aa20.07■□□□□ 0.8
CCDC28A-201ENST00000332797 TNNQ9UQP3 1299 aa20.07■□□□□ 0.8
CCDC28A-201ENST00000332797 GRAPQ13588 217 aa20.06■□□□□ 0.8
CCDC28A-201ENST00000332797 GRAPLQ8TC17 118 aaPredicted RBP20.06■□□□□ 0.8
CCDC28A-201ENST00000332797 TAF1P21675 1872 aa20.06■□□□□ 0.8
CCDC28A-201ENST00000332797 SOGA3Q5TF21 947 aa20.05■□□□□ 0.8
CCDC28A-201ENST00000332797 OLFM4Q6UX06 510 aa20.05■□□□□ 0.8
CCDC28A-201ENST00000332797 C7orf43Q8WVR3 580 aa20.05■□□□□ 0.8
CCDC28A-201ENST00000332797 CLUAP1Q96AJ1 413 aa20.05■□□□□ 0.8
CCDC28A-201ENST00000332797 PLA2G12BQ9BX93 195 aa20.05■□□□□ 0.8
CCDC28A-201ENST00000332797 NBPF7P0C2Y1 421 aaPredicted RBP20.05■□□□□ 0.8
CCDC28A-201ENST00000332797 CCDC93Q567U6 631 aa20.05■□□□□ 0.8
CCDC28A-201ENST00000332797 TTLL11Q8NHH1 800 aa20.05■□□□□ 0.8
CCDC28A-201ENST00000332797 SEC31BQ9NQW1 1179 aa20.05■□□□□ 0.8
CCDC28A-201ENST00000332797 COL4A1P02462 1669 aa20.04■□□□□ 0.8
CCDC28A-201ENST00000332797 UTYO14607 1347 aa20.04■□□□□ 0.8
CCDC28A-201ENST00000332797 RASSF7Q02833 373 aa20.04■□□□□ 0.8
CCDC28A-201ENST00000332797 SLC51AQ86UW1 340 aa20.04■□□□□ 0.8
CCDC28A-201ENST00000332797 CELF1Q92879 486 aaKnown RBP20.04■□□□□ 0.8
CCDC28A-201ENST00000332797 CHD4Q14839 1912 aa20.03■□□□□ 0.8
CCDC28A-201ENST00000332797 BBOX1O75936 387 aa20.03■□□□□ 0.8
CCDC28A-201ENST00000332797 SUCLG2Q96I99 432 aa20.03■□□□□ 0.8
CCDC28A-201ENST00000332797 USP44Q9H0E7 712 aa20.03■□□□□ 0.8
CCDC28A-201ENST00000332797 GREM2Q9H772 168 aa20.03■□□□□ 0.8
CCDC28A-201ENST00000332797 FER1L6Q2WGJ9 1857 aa20.02■□□□□ 0.8
CCDC28A-201ENST00000332797 NFKBIEO00221 500 aa20.02■□□□□ 0.8
CCDC28A-201ENST00000332797 FOXO4P98177 505 aa20.02■□□□□ 0.8
CCDC28A-201ENST00000332797 INTS3Q68E01 1043 aaKnown RBP20.02■□□□□ 0.8
CCDC28A-201ENST00000332797 FTSJ3Q8IY81 847 aaKnown RBP20.02■□□□□ 0.8
CCDC28A-201ENST00000332797 FAM161AQ3B820 660 aa20.01■□□□□ 0.79
CCDC28A-201ENST00000332797 EPHA10Q5JZY3 1008 aa20.01■□□□□ 0.79
CCDC28A-201ENST00000332797 TMX4Q9H1E5 349 aaPredicted RBP20.01■□□□□ 0.79
CCDC28A-201ENST00000332797 CHMP3Q9Y3E7 222 aa20.01■□□□□ 0.79
CCDC28A-201ENST00000332797 ATP6V0A2Q9Y487 856 aa20.01■□□□□ 0.79
CCDC28A-201ENST00000332797 RTL9Q8NET4 1388 aa20.01■□□□□ 0.79
CCDC28A-201ENST00000332797 CSF1RP07333 972 aa20■□□□□ 0.79
CCDC28A-201ENST00000332797 RPS8P62241 208 aaKnown RBP20■□□□□ 0.79
CCDC28A-201ENST00000332797 CC2D2BQ6DHV5 1058 aa20■□□□□ 0.79
CCDC28A-201ENST00000332797 DZIP1LQ8IYY4 767 aaKnown RBP20■□□□□ 0.79
CCDC28A-201ENST00000332797 TAOK3Q9H2K8 898 aa20■□□□□ 0.79
CCDC28A-201ENST00000332797 LMBR1LQ6UX01 489 aa19.99■□□□□ 0.79
CCDC28A-201ENST00000332797 TMC4Q7Z404 712 aa19.99■□□□□ 0.79
CCDC28A-201ENST00000332797 RTKN2Q8IZC4 609 aa19.99■□□□□ 0.79
CCDC28A-201ENST00000332797 TMEM57Q8N5G2 664 aa19.99■□□□□ 0.79
CCDC28A-201ENST00000332797 CDC5LQ99459 802 aaKnown RBP19.99■□□□□ 0.79
CCDC28A-201ENST00000332797 LRRC37AA6NMS7 1700 aa19.99■□□□□ 0.79
CCDC28A-201ENST00000332797 UBTFL1P0CB47 393 aaPredicted RBP19.99■□□□□ 0.79
CCDC28A-201ENST00000332797 ITGA6P23229 1130 aa19.99■□□□□ 0.79
CCDC28A-201ENST00000332797 ANKRD18AQ8IVF6 992 aa19.99■□□□□ 0.79
CCDC28A-201ENST00000332797 SP8Q8IXZ3 490 aa19.99■□□□□ 0.79
CCDC28A-201ENST00000332797 SNED1Q8TER0 1413 aa19.99■□□□□ 0.79
CCDC28A-201ENST00000332797 KAZALD1Q96I82 304 aa19.99■□□□□ 0.79
CCDC28A-201ENST00000332797 BICC1Q9H694 974 aaKnown RBP19.99■□□□□ 0.79
CCDC28A-201ENST00000332797 SPEF2Q9C093 1822 aa19.98■□□□□ 0.79
CCDC28A-201ENST00000332797 FKBP4Q02790 459 aaKnown RBP eCLIP19.98■□□□□ 0.79
CCDC28A-201ENST00000332797 C9orf131Q5VYM1 1079 aa19.98■□□□□ 0.79
CCDC28A-201ENST00000332797 MEIS3Q99687 375 aa19.98■□□□□ 0.79
CCDC28A-201ENST00000332797 LTBP3Q9NS15 1303 aa19.97■□□□□ 0.79
CCDC28A-201ENST00000332797 PLIN1O60240 522 aa19.97■□□□□ 0.79
CCDC28A-201ENST00000332797 RLBP1P12271 317 aa19.97■□□□□ 0.79
CCDC28A-201ENST00000332797 LMNB1P20700 586 aa19.97■□□□□ 0.79
CCDC28A-201ENST00000332797 YY1P25490 414 aa19.97■□□□□ 0.79
CCDC28A-201ENST00000332797 PRELPP51888 382 aa19.97■□□□□ 0.79
CCDC28A-201ENST00000332797 RNF181Q9P0P0 153 aa19.97■□□□□ 0.79
CCDC28A-201ENST00000332797 SBF1O95248 1867 aa19.96■□□□□ 0.79
CCDC28A-201ENST00000332797 ANKRD18BA2A2Z9 1011 aa19.96■□□□□ 0.79
CCDC28A-201ENST00000332797 IFIT5Q13325 482 aaKnown RBP19.96■□□□□ 0.79
CCDC28A-201ENST00000332797 GRIPAP1Q4V328 841 aa19.96■□□□□ 0.79
CCDC28A-201ENST00000332797 ITPRIPQ8IWB1 547 aa19.96■□□□□ 0.79
CCDC28A-201ENST00000332797 IGHMBP2P38935 993 aaKnown RBP19.95■□□□□ 0.78
CCDC28A-201ENST00000332797 DPP8Q6V1X1 898 aaPredicted RBP19.95■□□□□ 0.78
CCDC28A-201ENST00000332797 ANKRD44Q8N8A2 993 aa19.95■□□□□ 0.78
CCDC28A-201ENST00000332797 PANK1Q8TE04 598 aa19.95■□□□□ 0.78
CCDC28A-201ENST00000332797 ZNF277Q9NRM2 450 aaPredicted RBP19.95■□□□□ 0.78
CCDC28A-201ENST00000332797 GNAI3P08754 354 aa19.94■□□□□ 0.78
CCDC28A-201ENST00000332797 MS4A1P11836 297 aa19.94■□□□□ 0.78
CCDC28A-201ENST00000332797 CCDC57Q2TAC2 916 aa19.94■□□□□ 0.78
CCDC28A-201ENST00000332797 MPNDQ8N594 471 aa19.94■□□□□ 0.78
CCDC28A-201ENST00000332797 PSMD1Q99460 953 aa19.94■□□□□ 0.78
CCDC28A-201ENST00000332797 CCDC88AQ3V6T2 1871 aa19.94■□□□□ 0.78
CCDC28A-201ENST00000332797 RABL6Q3YEC7 729 aaPredicted RBP19.93■□□□□ 0.78
CCDC28A-201ENST00000332797 TAF7LQ5H9L4 462 aa19.93■□□□□ 0.78
CCDC28A-201ENST00000332797 GOLGA6L2Q8N9W4 650 aaPredicted RBP19.93■□□□□ 0.78
CCDC28A-201ENST00000332797 MPHOSPH8Q99549 860 aa19.93■□□□□ 0.78
CCDC28A-201ENST00000332797 LRRFIP2Q9Y608 721 aaKnown RBP19.93■□□□□ 0.78
CCDC28A-201ENST00000332797 TIAM2Q8IVF5 1701 aa19.93■□□□□ 0.78
CCDC28A-201ENST00000332797 GPSM2P81274 684 aa19.92■□□□□ 0.78
CCDC28A-201ENST00000332797 BSDC1Q9NW68 430 aaPredicted RBP19.92■□□□□ 0.78
CCDC28A-201ENST00000332797 NSFL1CQ9UNZ2 370 aaKnown RBP19.92■□□□□ 0.78
CCDC28A-201ENST00000332797 HDAC5Q9UQL6 1122 aa19.92■□□□□ 0.78
CCDC28A-201ENST00000332797 ZNF594Q96JF6 807 aaPredicted RBP19.92■□□□□ 0.78
CCDC28A-201ENST00000332797 DUOX1Q9NRD9 1551 aa19.92■□□□□ 0.78
CCDC28A-201ENST00000332797 SUPT20HQ8NEM7 779 aa19.91■□□□□ 0.78
CCDC28A-201ENST00000332797 ANKIB1Q9P2G1 1089 aa19.91■□□□□ 0.78
CCDC28A-201ENST00000332797 LTBP1Q14766 1721 aa19.9■□□□□ 0.78
CCDC28A-201ENST00000332797 IARSP41252 1262 aaKnown RBP19.9■□□□□ 0.78
CCDC28A-201ENST00000332797 RTFDC1Q9BY42 306 aaPredicted RBP19.9■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms