RNA–Protein interactions for RNA: ENST00000323668.11

TCOF1-201, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene TCOF1, Length 4,832 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-201ENST00000323668 DDX21Q9NR30 783 aaKnown RBP eCLIP17.14■□□□□ 0.33
TCOF1-201ENST00000323668 CWC25Q9NXE8 425 aaPredicted RBP17.14■□□□□ 0.33
TCOF1-201ENST00000323668 SPHKAPQ2M3C7 1700 aa17.14■□□□□ 0.33
TCOF1-201ENST00000323668 TXLNAP40222 546 aa17.14■□□□□ 0.33
TCOF1-201ENST00000323668 CCDC94Q9BW85 323 aaPredicted RBP17.14■□□□□ 0.33
TCOF1-201ENST00000323668 ZBTB3Q9H5J0 574 aa17.14■□□□□ 0.33
TCOF1-201ENST00000323668 SLC27A2O14975 620 aa17.13■□□□□ 0.33
TCOF1-201ENST00000323668 SNW1Q13573 536 aaKnown RBP17.13■□□□□ 0.33
TCOF1-201ENST00000323668 MRPS27Q92552 414 aaKnown RBP17.13■□□□□ 0.33
TCOF1-201ENST00000323668 UBAC1Q9BSL1 405 aa17.13■□□□□ 0.33
TCOF1-201ENST00000323668 KRT28Q7Z3Y7 464 aa17.13■□□□□ 0.33
TCOF1-201ENST00000323668 IL17REQ8NFR9 667 aa17.13■□□□□ 0.33
TCOF1-201ENST00000323668 ERCC4Q92889 916 aaPredicted RBP17.13■□□□□ 0.33
TCOF1-201ENST00000323668 DTNBO60941 627 aa17.13■□□□□ 0.33
TCOF1-201ENST00000323668 FAM227BQ96M60 508 aa17.13■□□□□ 0.33
TCOF1-201ENST00000323668 LGR6Q9HBX8 967 aa17.13■□□□□ 0.33
TCOF1-201ENST00000323668 RPS6KB1P23443 525 aa17.13■□□□□ 0.33
TCOF1-201ENST00000323668 MYRIPQ8NFW9 859 aa17.13■□□□□ 0.33
TCOF1-201ENST00000323668 RNMTO43148 476 aaKnown RBP17.12■□□□□ 0.33
TCOF1-201ENST00000323668 KCNG4Q8TDN1 519 aa17.12■□□□□ 0.33
TCOF1-201ENST00000323668 CWC15Q9P013 229 aaKnown RBP17.12■□□□□ 0.33
TCOF1-201ENST00000323668 CNNM3Q8NE01 707 aa17.12■□□□□ 0.33
TCOF1-201ENST00000323668 ARAP3Q8WWN8 1544 aa17.12■□□□□ 0.33
TCOF1-201ENST00000323668 ERCC6L2Q5T890 1561 aa17.12■□□□□ 0.33
TCOF1-201ENST00000323668 DHX32Q7L7V1 743 aaKnown RBP17.12■□□□□ 0.33
TCOF1-201ENST00000323668 C17orf53Q8N3J3 647 aaPredicted RBP17.12■□□□□ 0.33
TCOF1-201ENST00000323668 NCOA7Q8NI08 942 aa17.12■□□□□ 0.33
TCOF1-201ENST00000323668 UNC5CLQ8IV45 518 aa17.11■□□□□ 0.33
TCOF1-201ENST00000323668 CCDC150Q8NCX0 1101 aa17.11■□□□□ 0.33
TCOF1-201ENST00000323668 RGS12O14924 1447 aa17.11■□□□□ 0.33
TCOF1-201ENST00000323668 KIF2CQ99661 725 aa17.11■□□□□ 0.33
TCOF1-201ENST00000323668 ZHX1Q9UKY1 873 aaPredicted RBP17.11■□□□□ 0.33
TCOF1-201ENST00000323668 KLF18A0A0U1RQI7 1052 aa17.11■□□□□ 0.33
TCOF1-201ENST00000323668 NAPBQ9H115 298 aa17.11■□□□□ 0.33
TCOF1-201ENST00000323668 E9PCH4 1651 aa17.11■□□□□ 0.33
TCOF1-201ENST00000323668 YEATS2Q9ULM3 1422 aa17.11■□□□□ 0.33
TCOF1-201ENST00000323668 EIF4A1P60842 406 aaKnown RBP17.1■□□□□ 0.33
TCOF1-201ENST00000323668 CEP131Q9UPN4 1083 aa17.1■□□□□ 0.33
TCOF1-201ENST00000323668 AOPEPQ8N6M6 819 aa17.1■□□□□ 0.33
TCOF1-201ENST00000323668 GNL3LQ9NVN8 582 aaKnown RBP17.1■□□□□ 0.33
TCOF1-201ENST00000323668 RNF17Q9BXT8 1623 aaKnown RBP17.1■□□□□ 0.33
TCOF1-201ENST00000323668 STARD3NLO95772 234 aa17.1■□□□□ 0.33
TCOF1-201ENST00000323668 RAB11FIP4Q86YS3 637 aa17.1■□□□□ 0.33
TCOF1-201ENST00000323668 KCNA6P17658 529 aa17.1■□□□□ 0.33
TCOF1-201ENST00000323668 ISM2Q6H9L7 571 aa17.1■□□□□ 0.33
TCOF1-201ENST00000323668 PNPLA6Q8IY17 1366 aa17.1■□□□□ 0.33
TCOF1-201ENST00000323668 ERLIN1O75477 346 aa17.09■□□□□ 0.33
TCOF1-201ENST00000323668 IL15P40933 162 aaPredicted RBP17.09■□□□□ 0.33
TCOF1-201ENST00000323668 AK7Q96M32 723 aa17.09■□□□□ 0.33
TCOF1-201ENST00000323668 CCDC196A0A1B0GTZ2 297 aa17.09■□□□□ 0.33
TCOF1-201ENST00000323668 PTPDC1A2A3K4 754 aa17.09■□□□□ 0.33
TCOF1-201ENST00000323668 IARSP41252 1262 aaKnown RBP17.09■□□□□ 0.33
TCOF1-201ENST00000323668 TFCP2Q12800 502 aa17.09■□□□□ 0.33
TCOF1-201ENST00000323668 CAGE1Q8TC20 777 aa17.09■□□□□ 0.33
TCOF1-201ENST00000323668 ZFYP08048 801 aaPredicted RBP17.09■□□□□ 0.33
TCOF1-201ENST00000323668 PAG1Q9NWQ8 432 aa17.09■□□□□ 0.33
TCOF1-201ENST00000323668 MAGEC2Q9UBF1 373 aaPredicted RBP17.09■□□□□ 0.33
TCOF1-201ENST00000323668 GCP02774 474 aa17.09■□□□□ 0.33
TCOF1-201ENST00000323668 APOBRQ0VD83 1088 aa17.09■□□□□ 0.33
TCOF1-201ENST00000323668 CLEC17AQ6ZS10 378 aa17.09■□□□□ 0.33
TCOF1-201ENST00000323668 LRP2BPQ9P2M1 347 aa17.09■□□□□ 0.33
TCOF1-201ENST00000323668 SLC12A7Q9Y666 1083 aa17.09■□□□□ 0.33
TCOF1-201ENST00000323668 ABCA6Q8N139 1617 aa17.08■□□□□ 0.33
TCOF1-201ENST00000323668 ME3Q16798 604 aa17.08■□□□□ 0.33
TCOF1-201ENST00000323668 NFATC2IPQ8NCF5 419 aa17.08■□□□□ 0.33
TCOF1-201ENST00000323668 METP08581 1390 aa17.08■□□□□ 0.33
TCOF1-201ENST00000323668 CCDC102BQ68D86 513 aa17.08■□□□□ 0.32
TCOF1-201ENST00000323668 CCDC82Q8N4S0 544 aa17.08■□□□□ 0.32
TCOF1-201ENST00000323668 LEO1Q8WVC0 666 aaPredicted RBP17.08■□□□□ 0.32
TCOF1-201ENST00000323668 MTMR6Q9Y217 621 aa17.08■□□□□ 0.32
TCOF1-201ENST00000323668 GOLGA8AA7E2F4 631 aa17.08■□□□□ 0.32
TCOF1-201ENST00000323668 SYKP43405 635 aa17.08■□□□□ 0.32
TCOF1-201ENST00000323668 ARHGAP29Q52LW3 1261 aa17.08■□□□□ 0.32
TCOF1-201ENST00000323668 CDK12Q9NYV4 1490 aaPredicted RBP17.08■□□□□ 0.32
TCOF1-201ENST00000323668 ERICH4A6NGS2 130 aa17.08■□□□□ 0.32
TCOF1-201ENST00000323668 IFIT3O14879 490 aaKnown RBP17.08■□□□□ 0.32
TCOF1-201ENST00000323668 CDC37L1Q7L3B6 337 aa17.08■□□□□ 0.32
TCOF1-201ENST00000323668 RASEFQ8IZ41 740 aa17.08■□□□□ 0.32
TCOF1-201ENST00000323668 MTMR7Q9Y216 660 aa17.08■□□□□ 0.32
TCOF1-201ENST00000323668 ERBB4Q15303 1308 aa17.07■□□□□ 0.32
TCOF1-201ENST00000323668 LDHAL6AQ6ZMR3 332 aa17.07■□□□□ 0.32
TCOF1-201ENST00000323668 MICU3Q86XE3 530 aa17.07■□□□□ 0.32
TCOF1-201ENST00000323668 CLSTN2Q9H4D0 955 aa17.07■□□□□ 0.32
TCOF1-201ENST00000323668 METAP2P50579 478 aaKnown RBP eCLIP17.07■□□□□ 0.323e-8■■□□□ 13.7
TCOF1-201ENST00000323668 PTH1RQ03431 593 aa17.07■□□□□ 0.32
TCOF1-201ENST00000323668 TAF3Q5VWG9 929 aa17.07■□□□□ 0.32
TCOF1-201ENST00000323668 KLHDC4Q8TBB5 520 aa17.07■□□□□ 0.32
TCOF1-201ENST00000323668 CBX8Q9HC52 389 aa17.07■□□□□ 0.32
TCOF1-201ENST00000323668 ZNHIT6Q9NWK9 470 aaKnown RBP17.07■□□□□ 0.32
TCOF1-201ENST00000323668 NAP1L1P55209 391 aaKnown RBP17.07■□□□□ 0.32
TCOF1-201ENST00000323668 ATL3Q6DD88 541 aa17.07■□□□□ 0.32
TCOF1-201ENST00000323668 ARHGAP30Q7Z6I6 1101 aaPredicted RBP17.07■□□□□ 0.32
TCOF1-201ENST00000323668 RUFY1Q96T51 708 aa17.07■□□□□ 0.32
TCOF1-201ENST00000323668 ABCC3O15438 1527 aa17.06■□□□□ 0.32
TCOF1-201ENST00000323668 CPSF1Q10570 1443 aaKnown RBP17.06■□□□□ 0.32
TCOF1-201ENST00000323668 SPTLC2O15270 562 aa17.06■□□□□ 0.32
TCOF1-201ENST00000323668 MAP3K12Q12852 859 aa17.06■□□□□ 0.32
TCOF1-201ENST00000323668 KLHL10Q6JEL2 608 aa17.06■□□□□ 0.32
TCOF1-201ENST00000323668 LEKR1Q6ZMV7 388 aa17.06■□□□□ 0.32
TCOF1-201ENST00000323668 SUCLG2Q96I99 432 aa17.06■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 206.6 ms