RNA–Protein interactions for RNA: ENST00000322213.8

SMC1A-201, Transcript of structural maintenance of chromosomes 1A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMC1A, Length 9,784 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1A-201ENST00000322213 FKBP15Q5T1M5 1219 aa8.08□□□□□ -1.12
SMC1A-201ENST00000322213 ADCY10Q96PN6 1610 aa8.08□□□□□ -1.12
SMC1A-201ENST00000322213 GOPCQ9HD26 462 aa8.08□□□□□ -1.12
SMC1A-201ENST00000322213 LAMA4Q16363 1823 aa8.07□□□□□ -1.12
SMC1A-201ENST00000322213 MED4Q9NPJ6 270 aa8.07□□□□□ -1.12
SMC1A-201ENST00000322213 ZNF330Q9Y3S2 320 aaPredicted RBP8.07□□□□□ -1.12
SMC1A-201ENST00000322213 TRIP11Q15643 1979 aa8.07□□□□□ -1.12
SMC1A-201ENST00000322213 SRGAP3O43295 1099 aa8.07□□□□□ -1.12
SMC1A-201ENST00000322213 HLTFQ14527 1009 aaKnown RBP eCLIP8.07□□□□□ -1.12
SMC1A-201ENST00000322213 CNNM3Q8NE01 707 aa8.07□□□□□ -1.12
SMC1A-201ENST00000322213 NGDNQ8NEJ9 315 aaKnown RBP8.07□□□□□ -1.12
SMC1A-201ENST00000322213 NPHP3Q7Z494 1330 aa8.07□□□□□ -1.12
SMC1A-201ENST00000322213 GOLGA6CA6NDK9 693 aa8.07□□□□□ -1.12
SMC1A-201ENST00000322213 GOLGA6DP0CG33 693 aa8.07□□□□□ -1.12
SMC1A-201ENST00000322213 EFCAB13Q8IY85 973 aa8.07□□□□□ -1.12
SMC1A-201ENST00000322213 GOLGA6AQ9NYA3 693 aa8.07□□□□□ -1.12
SMC1A-201ENST00000322213 ADGRL1O94910 1474 aa8.07□□□□□ -1.12
SMC1A-201ENST00000322213 NFE2L2Q16236 605 aa8.07□□□□□ -1.12
SMC1A-201ENST00000322213 PRPF40BQ6NWY9 871 aaKnown RBP8.07□□□□□ -1.12
SMC1A-201ENST00000322213 SDSP20132 328 aa8.07□□□□□ -1.12
SMC1A-201ENST00000322213 PYM1Q9BRP8 204 aaKnown RBP8.07□□□□□ -1.12
SMC1A-201ENST00000322213 ZSWIM4Q9H7M6 989 aa8.07□□□□□ -1.12
SMC1A-201ENST00000322213 LMBRD1Q9NUN5 540 aa8.07□□□□□ -1.12
SMC1A-201ENST00000322213 CCDC113Q9H0I3 377 aa8.06□□□□□ -1.12
SMC1A-201ENST00000322213 IQGAP3Q86VI3 1631 aa8.06□□□□□ -1.12
SMC1A-201ENST00000322213 DNM1Q05193 864 aaKnown RBP8.06□□□□□ -1.12
SMC1A-201ENST00000322213 CCDC178Q5BJE1 867 aa8.06□□□□□ -1.12
SMC1A-201ENST00000322213 AOPEPQ8N6M6 819 aa8.06□□□□□ -1.12
SMC1A-201ENST00000322213 IFT74Q96LB3 600 aa8.06□□□□□ -1.12
SMC1A-201ENST00000322213 GBP1P32455 592 aa8.06□□□□□ -1.12
SMC1A-201ENST00000322213 C6orf163Q5TEZ5 329 aa8.06□□□□□ -1.12
SMC1A-201ENST00000322213 ATL3Q6DD88 541 aa8.06□□□□□ -1.12
SMC1A-201ENST00000322213 FAM114A1Q8IWE2 563 aa8.06□□□□□ -1.12
SMC1A-201ENST00000322213 TBC1D2BQ9UPU7 963 aa8.06□□□□□ -1.12
SMC1A-201ENST00000322213 ZNF75DP51815 510 aa8.06□□□□□ -1.12
SMC1A-201ENST00000322213 SH3BGRP55822 239 aaPredicted RBP8.06□□□□□ -1.12
SMC1A-201ENST00000322213 CCDC38Q502W7 563 aa8.06□□□□□ -1.12
SMC1A-201ENST00000322213 LOC102724159A0A0B4J2E5 919 aa8.06□□□□□ -1.12
SMC1A-201ENST00000322213 PWP2Q15269 919 aaKnown RBP8.06□□□□□ -1.12
SMC1A-201ENST00000322213 ARHGAP45Q92619 1136 aa8.06□□□□□ -1.12
SMC1A-201ENST00000322213 PREX2Q70Z35 1606 aa8.06□□□□□ -1.12
SMC1A-201ENST00000322213 MYO1BO43795 1136 aa8.06□□□□□ -1.12
SMC1A-201ENST00000322213 DNAJC25Q9H1X3 360 aa8.06□□□□□ -1.12
SMC1A-201ENST00000322213 NUP133Q8WUM0 1156 aa8.06□□□□□ -1.12
SMC1A-201ENST00000322213 CABP2Q9NPB3 220 aa8.06□□□□□ -1.12
SMC1A-201ENST00000322213 EXOC6BQ9Y2D4 811 aa8.06□□□□□ -1.12
SMC1A-201ENST00000322213 LUC7L3O95232 432 aaKnown RBP8.06□□□□□ -1.12
SMC1A-201ENST00000322213 KLHL10Q6JEL2 608 aa8.06□□□□□ -1.12
SMC1A-201ENST00000322213 CCDC129Q6ZRS4 1044 aa8.06□□□□□ -1.12
SMC1A-201ENST00000322213 C17orf53Q8N3J3 647 aaPredicted RBP8.06□□□□□ -1.12
SMC1A-201ENST00000322213 KIF4AO95239 1232 aa8.05□□□□□ -1.12
SMC1A-201ENST00000322213 FBF1Q8TES7 1133 aa8.05□□□□□ -1.12
SMC1A-201ENST00000322213 NEUROD6Q96NK8 337 aa8.05□□□□□ -1.12
SMC1A-201ENST00000322213 ZEB2O60315 1214 aa8.05□□□□□ -1.12
SMC1A-201ENST00000322213 TERF2Q15554 542 aa8.05□□□□□ -1.12
SMC1A-201ENST00000322213 SYT10Q6XYQ8 523 aa8.05□□□□□ -1.12
SMC1A-201ENST00000322213 VPS37DQ86XT2 251 aa8.05□□□□□ -1.12
SMC1A-201ENST00000322213 BICRAQ9NZM4 1560 aa8.05□□□□□ -1.12
SMC1A-201ENST00000322213 NUTM2DQ5VT03 806 aaPredicted RBP8.05□□□□□ -1.12
SMC1A-201ENST00000322213 TET3O43151 1660 aa8.05□□□□□ -1.12
SMC1A-201ENST00000322213 SLC8A1P32418 973 aa8.05□□□□□ -1.12
SMC1A-201ENST00000322213 SEPT6Q14141 434 aa8.05□□□□□ -1.12
SMC1A-201ENST00000322213 TTC14Q96N46 770 aa8.05□□□□□ -1.12
SMC1A-201ENST00000322213 MPHOSPH8Q99549 860 aa8.05□□□□□ -1.12
SMC1A-201ENST00000322213 SIL1Q9H173 461 aa8.05□□□□□ -1.12
SMC1A-201ENST00000322213 ZC3H13Q5T200 1668 aaKnown RBP8.05□□□□□ -1.12
SMC1A-201ENST00000322213 CCDC96Q2M329 555 aa8.05□□□□□ -1.12
SMC1A-201ENST00000322213 SPATS2LQ9NUQ6 558 aaKnown RBP8.05□□□□□ -1.12
SMC1A-201ENST00000322213 FMN2Q9NZ56 1722 aa8.05□□□□□ -1.12
SMC1A-201ENST00000322213 SSH2Q76I76 1423 aa8.05□□□□□ -1.12
SMC1A-201ENST00000322213 SMARCA5O60264 1052 aaPredicted RBP8.05□□□□□ -1.12
SMC1A-201ENST00000322213 BRD3Q15059 726 aa8.05□□□□□ -1.12
SMC1A-201ENST00000322213 TANGO6Q9C0B7 1094 aa8.05□□□□□ -1.12
SMC1A-201ENST00000322213 ANTXR1Q9H6X2 564 aa8.05□□□□□ -1.12
SMC1A-201ENST00000322213 RRP15Q9Y3B9 282 aaKnown RBP8.05□□□□□ -1.12
SMC1A-201ENST00000322213 SYKP43405 635 aa8.05□□□□□ -1.12
SMC1A-201ENST00000322213 LACTBP83111 547 aaPredicted RBP8.05□□□□□ -1.12
SMC1A-201ENST00000322213 RIC3Q7Z5B4 369 aa8.05□□□□□ -1.12
SMC1A-201ENST00000322213 ATRIPQ8WXE1 791 aa8.05□□□□□ -1.12
SMC1A-201ENST00000322213 TRIM21P19474 475 aaKnown RBP8.05□□□□□ -1.12
SMC1A-201ENST00000322213 SPECC1Q5M775 1068 aa8.05□□□□□ -1.12
SMC1A-201ENST00000322213 CCDC158Q5M9N0 1113 aa8.05□□□□□ -1.12
SMC1A-201ENST00000322213 KRT86O43790 486 aa8.04□□□□□ -1.12
SMC1A-201ENST00000322213 VAV2P52735 878 aa8.04□□□□□ -1.12
SMC1A-201ENST00000322213 DDX12PQ92771 950 aa8.04□□□□□ -1.12
SMC1A-201ENST00000322213 EVI5LQ96CN4 794 aa8.04□□□□□ -1.12
SMC1A-201ENST00000322213 DACT1Q9NYF0 836 aa8.04□□□□□ -1.12
SMC1A-201ENST00000322213 SAMD15Q9P1V8 674 aa8.04□□□□□ -1.12
SMC1A-201ENST00000322213 ZBTB12Q9Y330 459 aaPredicted RBP8.04□□□□□ -1.12
SMC1A-201ENST00000322213 PPFIA1Q13136 1202 aa8.04□□□□□ -1.12
SMC1A-201ENST00000322213 IFI16Q16666 785 aaKnown RBP8.04□□□□□ -1.12
SMC1A-201ENST00000322213 ZFYVE27Q5T4F4 411 aa8.04□□□□□ -1.12
SMC1A-201ENST00000322213 CEP63Q96MT8 703 aa8.04□□□□□ -1.12
SMC1A-201ENST00000322213 USP26Q9BXU7 913 aa8.04□□□□□ -1.12
SMC1A-201ENST00000322213 EFCAB8A8MWE9 144 aa8.04□□□□□ -1.12
SMC1A-201ENST00000322213 PHACTR2O75167 634 aa8.04□□□□□ -1.12
SMC1A-201ENST00000322213 NUTM1Q86Y26 1132 aa8.04□□□□□ -1.12
SMC1A-201ENST00000322213 ZGPATQ8N5A5 531 aaKnown RBP8.04□□□□□ -1.12
SMC1A-201ENST00000322213 NDUFAB1O14561 156 aa8.04□□□□□ -1.12
SMC1A-201ENST00000322213 CDC25BP30305 580 aa8.04□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 1345.6 ms