RNA–Protein interactions for RNA: ENST00000318787.13

HDDC2-201, Transcript of HD domain containing 2, humanhuman

TSL 1 (best)

Gene HDDC2, Length 1,350 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC2-201ENST00000318787 CCER2I3L3R5 266 aa20.55■□□□□ 0.88
HDDC2-201ENST00000318787 DDNO94850 711 aaPredicted RBP20.55■□□□□ 0.88
HDDC2-201ENST00000318787 GRAPQ13588 217 aa20.55■□□□□ 0.88
HDDC2-201ENST00000318787 CWF19L2Q2TBE0 894 aaKnown RBP20.55■□□□□ 0.88
HDDC2-201ENST00000318787 GRAPLQ8TC17 118 aaPredicted RBP20.55■□□□□ 0.88
HDDC2-201ENST00000318787 ATP6V0A2Q9Y487 856 aa20.55■□□□□ 0.88
HDDC2-201ENST00000318787 WDR90Q96KV7 1748 aa20.55■□□□□ 0.88
HDDC2-201ENST00000318787 HSPA6P17066 643 aa20.54■□□□□ 0.88
HDDC2-201ENST00000318787 DIEXFQ68CQ4 756 aaKnown RBP20.54■□□□□ 0.88
HDDC2-201ENST00000318787 JDP2Q8WYK2 163 aa20.54■□□□□ 0.88
HDDC2-201ENST00000318787 PSMD1Q99460 953 aa20.54■□□□□ 0.88
HDDC2-201ENST00000318787 BBOX1O75936 387 aa20.53■□□□□ 0.88
HDDC2-201ENST00000318787 PCCAP05165 728 aaPredicted RBP20.53■□□□□ 0.88
HDDC2-201ENST00000318787 VEGFAP15692 232 aaPredicted RBP20.53■□□□□ 0.88
HDDC2-201ENST00000318787 LARGE2Q8N3Y3 721 aa20.53■□□□□ 0.88
HDDC2-201ENST00000318787 SNED1Q8TER0 1413 aa20.53■□□□□ 0.88
HDDC2-201ENST00000318787 ZNF521Q96K83 1311 aa20.52■□□□□ 0.88
HDDC2-201ENST00000318787 IGKV5-2P06315 115 aa20.52■□□□□ 0.88
HDDC2-201ENST00000318787 HSP90B1P14625 803 aaKnown RBP20.52■□□□□ 0.88
HDDC2-201ENST00000318787 DPP8Q6V1X1 898 aaPredicted RBP20.52■□□□□ 0.88
HDDC2-201ENST00000318787 COL4A1P02462 1669 aa20.52■□□□□ 0.88
HDDC2-201ENST00000318787 ZNF541Q9H0D2 1346 aa20.51■□□□□ 0.87
HDDC2-201ENST00000318787 LRRC37AA6NMS7 1700 aa20.51■□□□□ 0.87
HDDC2-201ENST00000318787 PPIP5K2O43314 1243 aa20.51■□□□□ 0.87
HDDC2-201ENST00000318787 GRIPAP1Q4V328 841 aa20.51■□□□□ 0.87
HDDC2-201ENST00000318787 MPNDQ8N594 471 aa20.51■□□□□ 0.87
HDDC2-201ENST00000318787 CELF1Q92879 486 aaKnown RBP20.51■□□□□ 0.87
HDDC2-201ENST00000318787 NEURL1BA8MQ27 555 aa20.5■□□□□ 0.87
HDDC2-201ENST00000318787 PDE8AO60658 829 aa20.5■□□□□ 0.87
HDDC2-201ENST00000318787 SF3B3Q15393 1217 aaKnown RBP20.5■□□□□ 0.87
HDDC2-201ENST00000318787 AOC3Q16853 763 aa20.5■□□□□ 0.87
HDDC2-201ENST00000318787 SP8Q8IXZ3 490 aa20.5■□□□□ 0.87
HDDC2-201ENST00000318787 DNAAF4Q8WXU2 420 aa20.5■□□□□ 0.87
HDDC2-201ENST00000318787 COL4A5P29400 1685 aa20.5■□□□□ 0.87
HDDC2-201ENST00000318787 E9PSI1 815 aa20.49■□□□□ 0.87
HDDC2-201ENST00000318787 F6X3S4 739 aa20.49■□□□□ 0.87
HDDC2-201ENST00000318787 CCDC152Q4G0S7 254 aa20.49■□□□□ 0.87
HDDC2-201ENST00000318787 UBE3BQ7Z3V4 1068 aa20.49■□□□□ 0.87
HDDC2-201ENST00000318787 RBM46Q8TBY0 533 aaKnown RBP20.49■□□□□ 0.87
HDDC2-201ENST00000318787 GJA3Q9Y6H8 435 aa20.49■□□□□ 0.87
HDDC2-201ENST00000318787 SCN4AP35499 1836 aa20.48■□□□□ 0.87
HDDC2-201ENST00000318787 EIF6P56537 245 aaKnown RBP20.48■□□□□ 0.87
HDDC2-201ENST00000318787 NIM1KQ8IY84 436 aa20.48■□□□□ 0.87
HDDC2-201ENST00000318787 SUPT20HQ8NEM7 779 aa20.48■□□□□ 0.87
HDDC2-201ENST00000318787 SEC31BQ9NQW1 1179 aa20.48■□□□□ 0.87
HDDC2-201ENST00000318787 MIER1Q8N108 512 aa20.47■□□□□ 0.87
HDDC2-201ENST00000318787 CDCA7LQ96GN5 454 aa20.47■□□□□ 0.87
HDDC2-201ENST00000318787 NSFL1CQ9UNZ2 370 aaKnown RBP20.47■□□□□ 0.87
HDDC2-201ENST00000318787 TMC4Q7Z404 712 aa20.46■□□□□ 0.87
HDDC2-201ENST00000318787 CDHR2Q9BYE9 1310 aa20.46■□□□□ 0.87
HDDC2-201ENST00000318787 POTECB2RU33 542 aa20.46■□□□□ 0.87
HDDC2-201ENST00000318787 CTSWP56202 376 aa20.46■□□□□ 0.87
HDDC2-201ENST00000318787 RPS8P62241 208 aaKnown RBP20.46■□□□□ 0.87
HDDC2-201ENST00000318787 SLC4A10Q6U841 1118 aa20.46■□□□□ 0.87
HDDC2-201ENST00000318787 DUOX1Q9NRD9 1551 aa20.45■□□□□ 0.86
HDDC2-201ENST00000318787 C6orf229H3BNL8 230 aa20.45■□□□□ 0.86
HDDC2-201ENST00000318787 FZD9O00144 591 aa20.45■□□□□ 0.86
HDDC2-201ENST00000318787 SLFN5Q08AF3 891 aa20.45■□□□□ 0.86
HDDC2-201ENST00000318787 GCKRQ14397 625 aa20.45■□□□□ 0.86
HDDC2-201ENST00000318787 SMC1BQ8NDV3 1235 aa20.45■□□□□ 0.86
HDDC2-201ENST00000318787 LINS1Q8NG48 757 aa20.45■□□□□ 0.86
HDDC2-201ENST00000318787 IQCA1LA6NCM1 817 aa20.44■□□□□ 0.86
HDDC2-201ENST00000318787 EAPPQ56P03 285 aaPredicted RBP20.44■□□□□ 0.86
HDDC2-201ENST00000318787 BCL2L13Q9BXK5 485 aa20.44■□□□□ 0.86
HDDC2-201ENST00000318787 RIMBP2O15034 1052 aa20.43■□□□□ 0.86
HDDC2-201ENST00000318787 GPSM2P81274 684 aa20.43■□□□□ 0.86
HDDC2-201ENST00000318787 FSTL1Q12841 308 aa20.43■□□□□ 0.86
HDDC2-201ENST00000318787 ANKRD18AQ8IVF6 992 aa20.43■□□□□ 0.86
HDDC2-201ENST00000318787 GPC2Q8N158 579 aa20.42■□□□□ 0.86
HDDC2-201ENST00000318787 GPR101Q96P66 508 aaPredicted RBP20.42■□□□□ 0.86
HDDC2-201ENST00000318787 RTFDC1Q9BY42 306 aaPredicted RBP20.42■□□□□ 0.86
HDDC2-201ENST00000318787 GREM2Q9H772 168 aa20.42■□□□□ 0.86
HDDC2-201ENST00000318787 ANKIB1Q9P2G1 1089 aa20.42■□□□□ 0.86
HDDC2-201ENST00000318787 HACL1Q9UJ83 578 aa20.42■□□□□ 0.86
HDDC2-201ENST00000318787 H7C1W4 665 aa20.41■□□□□ 0.86
HDDC2-201ENST00000318787 POTEIP0CG38 1075 aa20.41■□□□□ 0.86
HDDC2-201ENST00000318787 POTEJP0CG39 1038 aa20.41■□□□□ 0.86
HDDC2-201ENST00000318787 APLP1P51693 650 aa20.41■□□□□ 0.86
HDDC2-201ENST00000318787 WASHC4Q2M389 1173 aa20.41■□□□□ 0.86
HDDC2-201ENST00000318787 CLEC11AQ9Y240 323 aa20.41■□□□□ 0.86
HDDC2-201ENST00000318787 CHMP3Q9Y3E7 222 aa20.41■□□□□ 0.86
HDDC2-201ENST00000318787 LTBP1Q14766 1721 aa20.4■□□□□ 0.86
HDDC2-201ENST00000318787 LMOD1P29536 600 aaPredicted RBP20.4■□□□□ 0.86
HDDC2-201ENST00000318787 KIAA2012Q0VF49 1180 aa20.4■□□□□ 0.86
HDDC2-201ENST00000318787 TTLL11Q8NHH1 800 aa20.4■□□□□ 0.86
HDDC2-201ENST00000318787 L3MBTL3Q96JM7 780 aaPredicted RBP20.4■□□□□ 0.86
HDDC2-201ENST00000318787 CDC5LQ99459 802 aaKnown RBP20.4■□□□□ 0.86
HDDC2-201ENST00000318787 UFL1O94874 794 aa20.39■□□□□ 0.85
HDDC2-201ENST00000318787 BEND3Q5T5X7 828 aa20.39■□□□□ 0.85
HDDC2-201ENST00000318787 VPS33BQ9H267 617 aa20.39■□□□□ 0.85
HDDC2-201ENST00000318787 TAF1DQ9H5J8 278 aaPredicted RBP20.39■□□□□ 0.85
HDDC2-201ENST00000318787 ZNRF3Q9ULT6 936 aa20.39■□□□□ 0.85
HDDC2-201ENST00000318787 G3V3G9 751 aa20.38■□□□□ 0.85
HDDC2-201ENST00000318787 RAD17O75943 681 aa20.38■□□□□ 0.85
HDDC2-201ENST00000318787 EPHX2P34913 555 aa20.38■□□□□ 0.85
HDDC2-201ENST00000318787 HTRA3P83110 453 aa20.38■□□□□ 0.85
HDDC2-201ENST00000318787 DCAF8Q5TAQ9 597 aa20.38■□□□□ 0.85
HDDC2-201ENST00000318787 MRPL50Q8N5N7 158 aaKnown RBP20.38■□□□□ 0.85
HDDC2-201ENST00000318787 RNF39Q9H2S5 420 aa20.38■□□□□ 0.85
HDDC2-201ENST00000318787 DBNDD1Q9H9R9 158 aa20.38■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms