RNA–Protein interactions for RNA: ENST00000301897.5

CCDC88B-201, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 870 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-201ENST00000301897 GMPSP49915 693 aaPredicted RBP19.34■□□□□ 0.69
CCDC88B-201ENST00000301897 PROSER3Q2NL68 480 aa19.34■□□□□ 0.69
CCDC88B-201ENST00000301897 COPS6Q7L5N1 327 aa19.34■□□□□ 0.69
CCDC88B-201ENST00000301897 ABHD8Q96I13 439 aa19.34■□□□□ 0.69
CCDC88B-201ENST00000301897 HHIPL1Q96JK4 782 aa19.34■□□□□ 0.69
CCDC88B-201ENST00000301897 TCIRG1Q13488 830 aa19.33■□□□□ 0.68
CCDC88B-201ENST00000301897 GRAPQ13588 217 aa19.33■□□□□ 0.68
CCDC88B-201ENST00000301897 RALBP1Q15311 655 aa19.33■□□□□ 0.68
CCDC88B-201ENST00000301897 CYP4F22Q6NT55 531 aa19.33■□□□□ 0.68
CCDC88B-201ENST00000301897 GRAPLQ8TC17 118 aaPredicted RBP19.33■□□□□ 0.68
CCDC88B-201ENST00000301897 XAGE3Q8WTP9 111 aa19.33■□□□□ 0.68
CCDC88B-201ENST00000301897 BCL2L13Q9BXK5 485 aa19.33■□□□□ 0.68
CCDC88B-201ENST00000301897 PGAP2Q9UHJ9 254 aa19.33■□□□□ 0.68
CCDC88B-201ENST00000301897 ANXA1P04083 346 aa19.32■□□□□ 0.68
CCDC88B-201ENST00000301897 HCLS1P14317 486 aaPredicted RBP19.32■□□□□ 0.68
CCDC88B-201ENST00000301897 TMPOP42166 694 aaKnown RBP19.32■□□□□ 0.68
CCDC88B-201ENST00000301897 FMR1Q06787 632 aaKnown RBP eCLIP19.32■□□□□ 0.68
CCDC88B-201ENST00000301897 AIMP1Q12904 312 aaKnown RBP19.32■□□□□ 0.68
CCDC88B-201ENST00000301897 GRM1Q13255 1194 aa19.32■□□□□ 0.68
CCDC88B-201ENST00000301897 SAPCD2Q86UD0 394 aa19.32■□□□□ 0.68
CCDC88B-201ENST00000301897 SLC51AQ86UW1 340 aa19.32■□□□□ 0.68
CCDC88B-201ENST00000301897 CELF2O95319 508 aaKnown RBP19.31■□□□□ 0.68
CCDC88B-201ENST00000301897 H7C1D1 291 aa19.29■□□□□ 0.68
CCDC88B-201ENST00000301897 RAD17O75943 681 aa19.29■□□□□ 0.68
CCDC88B-201ENST00000301897 HOXB7P09629 217 aa19.29■□□□□ 0.68
CCDC88B-201ENST00000301897 CDC37L1Q7L3B6 337 aa19.29■□□□□ 0.68
CCDC88B-201ENST00000301897 NECTIN2Q92692 538 aa19.29■□□□□ 0.68
CCDC88B-201ENST00000301897 CHL1O00533 1208 aa19.28■□□□□ 0.68
CCDC88B-201ENST00000301897 BRPF1P55201 1214 aaPredicted RBP19.28■□□□□ 0.68
CCDC88B-201ENST00000301897 PLBD2Q8NHP8 589 aa19.28■□□□□ 0.68
CCDC88B-201ENST00000301897 DPF2Q92785 391 aa19.28■□□□□ 0.68
CCDC88B-201ENST00000301897 GLIS2Q9BZE0 524 aaPredicted RBP19.28■□□□□ 0.68
CCDC88B-201ENST00000301897 CNOT7Q9UIV1 285 aaKnown RBP19.28■□□□□ 0.68
CCDC88B-201ENST00000301897 LRRC37AA6NMS7 1700 aa19.28■□□□□ 0.68
CCDC88B-201ENST00000301897 AOC2O75106 756 aa19.26■□□□□ 0.67
CCDC88B-201ENST00000301897 WASHC4Q2M389 1173 aa19.26■□□□□ 0.67
CCDC88B-201ENST00000301897 RPS12P25398 132 aaKnown RBP19.25■□□□□ 0.67
CCDC88B-201ENST00000301897 HIRAP54198 1017 aaPredicted RBP19.25■□□□□ 0.67
CCDC88B-201ENST00000301897 SF3B3Q15393 1217 aaKnown RBP19.25■□□□□ 0.67
CCDC88B-201ENST00000301897 HDGFL1Q5TGJ6 251 aa19.25■□□□□ 0.67
CCDC88B-201ENST00000301897 ANKRD13DQ6ZTN6 518 aa19.25■□□□□ 0.67
CCDC88B-201ENST00000301897 MICALL2Q8IY33 904 aa19.25■□□□□ 0.67
CCDC88B-201ENST00000301897 CHPF2Q9P2E5 772 aa19.25■□□□□ 0.67
CCDC88B-201ENST00000301897 DBF4Q9UBU7 674 aaPredicted RBP19.25■□□□□ 0.67
CCDC88B-201ENST00000301897 TAF1P21675 1872 aa19.24■□□□□ 0.67
CCDC88B-201ENST00000301897 DUOX1Q9NRD9 1551 aa19.24■□□□□ 0.67
CCDC88B-201ENST00000301897 YDJCA8MPS7 323 aa19.24■□□□□ 0.67
CCDC88B-201ENST00000301897 HSP90B1P14625 803 aaKnown RBP19.24■□□□□ 0.67
CCDC88B-201ENST00000301897 NOGQ13253 232 aa19.24■□□□□ 0.67
CCDC88B-201ENST00000301897 TRPM4Q8TD43 1214 aa19.24■□□□□ 0.67
CCDC88B-201ENST00000301897 EYA3Q99504 573 aa19.24■□□□□ 0.67
CCDC88B-201ENST00000301897 ZNF408Q9H9D4 720 aa19.24■□□□□ 0.67
CCDC88B-201ENST00000301897 HYPKQ9NX55 129 aa19.24■□□□□ 0.67
CCDC88B-201ENST00000301897 DDX60Q8IY21 1712 aaKnown RBP19.24■□□□□ 0.67
CCDC88B-201ENST00000301897 TRIM28Q13263 835 aaKnown RBP19.23■□□□□ 0.67
CCDC88B-201ENST00000301897 NEUROD2Q15784 382 aa19.23■□□□□ 0.67
CCDC88B-201ENST00000301897 RUNDC1Q96C34 613 aa19.23■□□□□ 0.67
CCDC88B-201ENST00000301897 ISCA1Q9BUE6 129 aa19.23■□□□□ 0.67
CCDC88B-201ENST00000301897 NSFL1CQ9UNZ2 370 aaKnown RBP19.23■□□□□ 0.67
CCDC88B-201ENST00000301897 LAS1LQ9Y4W2 734 aaKnown RBP19.23■□□□□ 0.67
CCDC88B-201ENST00000301897 CCDC85CA6NKD9 419 aa19.22■□□□□ 0.67
CCDC88B-201ENST00000301897 PSMD14O00487 310 aa19.22■□□□□ 0.67
CCDC88B-201ENST00000301897 FAM89AQ96GI7 184 aa19.22■□□□□ 0.67
CCDC88B-201ENST00000301897 MYBBP1AQ9BQG0 1328 aaKnown RBP19.22■□□□□ 0.67
CCDC88B-201ENST00000301897 C6orf229H3BNL8 230 aa19.21■□□□□ 0.67
CCDC88B-201ENST00000301897 WDR43Q15061 677 aaKnown RBP eCLIP19.21■□□□□ 0.67
CCDC88B-201ENST00000301897 KRT24Q2M2I5 525 aa19.21■□□□□ 0.67
CCDC88B-201ENST00000301897 FAM161AQ3B820 660 aa19.21■□□□□ 0.67
CCDC88B-201ENST00000301897 USP48Q86UV5 1035 aa19.21■□□□□ 0.67
CCDC88B-201ENST00000301897 RGS19P49795 217 aa19.2■□□□□ 0.66
CCDC88B-201ENST00000301897 HUNKP57058 714 aa19.2■□□□□ 0.66
CCDC88B-201ENST00000301897 KRT26Q7Z3Y9 468 aa19.2■□□□□ 0.66
CCDC88B-201ENST00000301897 CELF1Q92879 486 aaKnown RBP19.2■□□□□ 0.66
CCDC88B-201ENST00000301897 DBNDD1Q9H9R9 158 aa19.2■□□□□ 0.66
CCDC88B-201ENST00000301897 TSKSQ9UJT2 592 aa19.2■□□□□ 0.66
CCDC88B-201ENST00000301897 TRIM35Q9UPQ4 493 aa19.2■□□□□ 0.66
CCDC88B-201ENST00000301897 CASP8AP2Q9UKL3 1982 aa19.2■□□□□ 0.66
CCDC88B-201ENST00000301897 RPS8P62241 208 aaKnown RBP19.19■□□□□ 0.66
CCDC88B-201ENST00000301897 MLLT1Q03111 559 aaPredicted RBP19.19■□□□□ 0.66
CCDC88B-201ENST00000301897 CCDC146Q8IYE0 955 aa19.19■□□□□ 0.66
CCDC88B-201ENST00000301897 C2orf69Q8N8R5 385 aa19.19■□□□□ 0.66
CCDC88B-201ENST00000301897 DCPSQ96C86 337 aaKnown RBP19.19■□□□□ 0.66
CCDC88B-201ENST00000301897 CFAP44Q96MT7 982 aa19.19■□□□□ 0.66
CCDC88B-201ENST00000301897 POLLQ9UGP5 575 aa19.19■□□□□ 0.66
CCDC88B-201ENST00000301897 ZBTB12Q9Y330 459 aaPredicted RBP19.19■□□□□ 0.66
CCDC88B-201ENST00000301897 ATP5J2-PTCD1G3V325 749 aa19.18■□□□□ 0.66
CCDC88B-201ENST00000301897 IRS4O14654 1257 aaPredicted RBP19.18■□□□□ 0.66
CCDC88B-201ENST00000301897 ECE2O60344 883 aa19.18■□□□□ 0.66
CCDC88B-201ENST00000301897 GPSM2P81274 684 aa19.18■□□□□ 0.66
CCDC88B-201ENST00000301897 SAMD7Q7Z3H4 446 aa19.18■□□□□ 0.66
CCDC88B-201ENST00000301897 CCDC102AQ96A19 550 aa19.18■□□□□ 0.66
CCDC88B-201ENST00000301897 POLR2AP24928 1970 aaKnown RBP19.18■□□□□ 0.66
CCDC88B-201ENST00000301897 SHTN1A0MZ66 631 aa19.17■□□□□ 0.66
CCDC88B-201ENST00000301897 RIMBP2O15034 1052 aa19.17■□□□□ 0.66
CCDC88B-201ENST00000301897 GOLGA2Q08379 1002 aa19.17■□□□□ 0.66
CCDC88B-201ENST00000301897 TBC1D10BQ4KMP7 808 aaPredicted RBP19.17■□□□□ 0.66
CCDC88B-201ENST00000301897 DUSP27Q5VZP5 1158 aa19.17■□□□□ 0.66
CCDC88B-201ENST00000301897 CHMP4AQ9BY43 222 aa19.17■□□□□ 0.66
CCDC88B-201ENST00000301897 ZC3H12CQ9C0D7 883 aaKnown RBP19.17■□□□□ 0.66
CCDC88B-201ENST00000301897 GBA2Q9HCG7 927 aaPredicted RBP19.17■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 108.2 ms