RNA–Protein interactions for RNA: ENST00000294816.6

LMX1A-201, Transcript of LIM homeobox transcription factor 1 alpha, humanhuman

APPRIS P1 TSL 2 BASIC

Gene LMX1A, Length 3,350 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1A-201ENST00000294816 PPP4R3CPQ6ZMV5 832 aa12.03□□□□□ -0.48
LMX1A-201ENST00000294816 CEP57L1Q8IYX8 460 aa12.03□□□□□ -0.48
LMX1A-201ENST00000294816 TRIM34Q9BYJ4 488 aa12.03□□□□□ -0.48
LMX1A-201ENST00000294816 CFAP45Q9UL16 551 aa12.03□□□□□ -0.48
LMX1A-201ENST00000294816 A0A0D9SFI3 127 aa12.02□□□□□ -0.48
LMX1A-201ENST00000294816 CLCN6P51797 869 aa12.02□□□□□ -0.48
LMX1A-201ENST00000294816 NUTM2GQ5VZR2 741 aa12.02□□□□□ -0.48
LMX1A-201ENST00000294816 RBM43Q6ZSC3 357 aaKnown RBP12.02□□□□□ -0.48
LMX1A-201ENST00000294816 MNS1Q8NEH6 495 aa12.02□□□□□ -0.48
LMX1A-201ENST00000294816 DNAAF4Q8WXU2 420 aa12.02□□□□□ -0.48
LMX1A-201ENST00000294816 CHMP4AQ9BY43 222 aa12.02□□□□□ -0.48
LMX1A-201ENST00000294816 ARHGEF10O15013 1369 aa12.02□□□□□ -0.48
LMX1A-201ENST00000294816 HNRNPH2P55795 449 aaKnown RBP12.02□□□□□ -0.49
LMX1A-201ENST00000294816 FAM177A1Q8N128 213 aaPredicted RBP12.02□□□□□ -0.49
LMX1A-201ENST00000294816 NEK11Q8NG66 645 aa12.02□□□□□ -0.49
LMX1A-201ENST00000294816 ANO10Q9NW15 660 aa12.02□□□□□ -0.49
LMX1A-201ENST00000294816 CHPF2Q9P2E5 772 aa12.02□□□□□ -0.49
LMX1A-201ENST00000294816 NRDCO43847 1150 aa12.02□□□□□ -0.49
LMX1A-201ENST00000294816 CAVIN2O95810 425 aa12.02□□□□□ -0.49
LMX1A-201ENST00000294816 TOB2Q14106 344 aaPredicted RBP12.02□□□□□ -0.49
LMX1A-201ENST00000294816 FSIP1Q8NA03 581 aa12.02□□□□□ -0.49
LMX1A-201ENST00000294816 ZBTB9Q96C00 473 aa12.02□□□□□ -0.49
LMX1A-201ENST00000294816 MAP3K5Q99683 1374 aa12.02□□□□□ -0.49
LMX1A-201ENST00000294816 BIN1O00499 593 aa12.01□□□□□ -0.49
LMX1A-201ENST00000294816 TMCO3Q6UWJ1 677 aa12.01□□□□□ -0.49
LMX1A-201ENST00000294816 UBXN4Q92575 508 aa12.01□□□□□ -0.49
LMX1A-201ENST00000294816 MAP4K1Q92918 833 aa12.01□□□□□ -0.49
LMX1A-201ENST00000294816 DNAI1Q9UI46 699 aa12.01□□□□□ -0.49
LMX1A-201ENST00000294816 CCDC9Q9Y3X0 531 aaKnown RBP12.01□□□□□ -0.49
LMX1A-201ENST00000294816 PDIA4P13667 645 aaKnown RBP12.01□□□□□ -0.49
LMX1A-201ENST00000294816 RESTQ13127 1097 aa12.01□□□□□ -0.49
LMX1A-201ENST00000294816 TEX35Q5T0J7 233 aa12.01□□□□□ -0.49
LMX1A-201ENST00000294816 USHBP1Q8N6Y0 703 aa12.01□□□□□ -0.49
LMX1A-201ENST00000294816 IL17REQ8NFR9 667 aa12.01□□□□□ -0.49
LMX1A-201ENST00000294816 KIF2AO00139 706 aaPredicted RBP12.01□□□□□ -0.49
LMX1A-201ENST00000294816 SFPQP23246 707 aaKnown RBP eCLIP12.01□□□□□ -0.49
LMX1A-201ENST00000294816 GNL2Q13823 731 aaKnown RBP12.01□□□□□ -0.49
LMX1A-201ENST00000294816 SARM1Q6SZW1 724 aa12.01□□□□□ -0.49
LMX1A-201ENST00000294816 EDC3Q96F86 508 aaKnown RBP12.01□□□□□ -0.49
LMX1A-201ENST00000294816 DNAJC2Q99543 621 aaKnown RBP12.01□□□□□ -0.49
LMX1A-201ENST00000294816 GOLPH3LQ9H4A5 285 aa12.01□□□□□ -0.49
LMX1A-201ENST00000294816 ARGLU1Q9NWB6 273 aaPredicted RBP12.01□□□□□ -0.49
LMX1A-201ENST00000294816 IFNKQ9P0W0 207 aa12.01□□□□□ -0.49
LMX1A-201ENST00000294816 URI1O94763 535 aaPredicted RBP12□□□□□ -0.49
LMX1A-201ENST00000294816 TNNT3P45378 269 aaPredicted RBP12□□□□□ -0.49
LMX1A-201ENST00000294816 G3BP1Q13283 466 aaKnown RBP eCLIP12□□□□□ -0.49
LMX1A-201ENST00000294816 TMX1Q9H3N1 280 aa12□□□□□ -0.49
LMX1A-201ENST00000294816 METP08581 1390 aa12□□□□□ -0.49
LMX1A-201ENST00000294816 CTAGE5O15320 804 aa12□□□□□ -0.49
LMX1A-201ENST00000294816 PNMA6AP0CW24 399 aaPredicted RBP12□□□□□ -0.49
LMX1A-201ENST00000294816 GSDMDP57764 484 aa12□□□□□ -0.49
LMX1A-201ENST00000294816 Q6ZUG5 572 aa12□□□□□ -0.49
LMX1A-201ENST00000294816 PPP1R13BQ96KQ4 1090 aa12□□□□□ -0.49
LMX1A-201ENST00000294816 NAT10Q9H0A0 1025 aaKnown RBP12□□□□□ -0.49
LMX1A-201ENST00000294816 ERBB3P21860 1342 aa12□□□□□ -0.49
LMX1A-201ENST00000294816 TMEM131LA2VDJ0 1609 aa12□□□□□ -0.49
LMX1A-201ENST00000294816 SEC31AO94979 1220 aaKnown RBP11.99□□□□□ -0.49
LMX1A-201ENST00000294816 ISM2Q6H9L7 571 aa11.99□□□□□ -0.49
LMX1A-201ENST00000294816 DHX40Q8IX18 779 aaKnown RBP11.99□□□□□ -0.49
LMX1A-201ENST00000294816 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP11.99□□□□□ -0.49
LMX1A-201ENST00000294816 TUBGCP6Q96RT7 1819 aa11.99□□□□□ -0.49
LMX1A-201ENST00000294816 HIP1O00291 1037 aa11.99□□□□□ -0.49
LMX1A-201ENST00000294816 CAPN2P17655 700 aa11.99□□□□□ -0.49
LMX1A-201ENST00000294816 CCT2P78371 535 aaKnown RBP11.99□□□□□ -0.49
LMX1A-201ENST00000294816 SF3A1Q15459 793 aaKnown RBP11.99□□□□□ -0.49
LMX1A-201ENST00000294816 SLFNL1Q499Z3 407 aa11.99□□□□□ -0.49
LMX1A-201ENST00000294816 ZNF589Q86UQ0 364 aaPredicted RBP11.99□□□□□ -0.49
LMX1A-201ENST00000294816 ZFP91Q96JP5 570 aaPredicted RBP11.99□□□□□ -0.49
LMX1A-201ENST00000294816 TLR7Q9NYK1 1049 aaKnown RBP11.99□□□□□ -0.49
LMX1A-201ENST00000294816 E4F1Q66K89 784 aaPredicted RBP11.99□□□□□ -0.49
LMX1A-201ENST00000294816 C14orf37Q86TY3 774 aa11.99□□□□□ -0.49
LMX1A-201ENST00000294816 XPO4Q9C0E2 1151 aaKnown RBP11.99□□□□□ -0.49
LMX1A-201ENST00000294816 CYP2C19P33261 490 aa11.98□□□□□ -0.49
LMX1A-201ENST00000294816 BEND3Q5T5X7 828 aa11.98□□□□□ -0.49
LMX1A-201ENST00000294816 USP28Q96RU2 1077 aa11.98□□□□□ -0.49
LMX1A-201ENST00000294816 FHOD1Q9Y613 1164 aa11.98□□□□□ -0.49
LMX1A-201ENST00000294816 NDUFB9Q9Y6M9 179 aa11.98□□□□□ -0.49
LMX1A-201ENST00000294816 RIMS1Q86UR5 1692 aaKnown RBP11.98□□□□□ -0.49
LMX1A-201ENST00000294816 DLC1Q96QB1 1528 aa11.98□□□□□ -0.49
LMX1A-201ENST00000294816 CWF19L2Q2TBE0 894 aaKnown RBP11.98□□□□□ -0.49
LMX1A-201ENST00000294816 NGDNQ8NEJ9 315 aaKnown RBP11.98□□□□□ -0.49
LMX1A-201ENST00000294816 IPO4Q8TEX9 1081 aaKnown RBP11.98□□□□□ -0.49
LMX1A-201ENST00000294816 KCNB2Q92953 911 aa11.98□□□□□ -0.49
LMX1A-201ENST00000294816 CCDC34Q96HJ3 373 aa11.98□□□□□ -0.49
LMX1A-201ENST00000294816 NEK1Q96PY6 1258 aa11.98□□□□□ -0.49
LMX1A-201ENST00000294816 EPC1Q9H2F5 836 aa11.98□□□□□ -0.49
LMX1A-201ENST00000294816 ZSCAN16Q9H4T2 348 aaPredicted RBP11.98□□□□□ -0.49
LMX1A-201ENST00000294816 A0A1B0GVL5 298 aa11.98□□□□□ -0.49
LMX1A-201ENST00000294816 CCDC129Q6ZRS4 1044 aa11.98□□□□□ -0.49
LMX1A-201ENST00000294816 ERC1Q8IUD2 1116 aa11.98□□□□□ -0.49
LMX1A-201ENST00000294816 EAF2Q96CJ1 260 aaPredicted RBP11.98□□□□□ -0.49
LMX1A-201ENST00000294816 H2AFXP16104 143 aaPredicted RBP11.97□□□□□ -0.49
LMX1A-201ENST00000294816 PLA2G4AP47712 749 aa11.97□□□□□ -0.49
LMX1A-201ENST00000294816 TPM4P67936 248 aa11.97□□□□□ -0.49
LMX1A-201ENST00000294816 ZCCHC17Q9NP64 241 aaKnown RBP11.97□□□□□ -0.49
LMX1A-201ENST00000294816 KLHDC4Q8TBB5 520 aa11.97□□□□□ -0.49
LMX1A-201ENST00000294816 CARD6Q9BX69 1037 aa11.97□□□□□ -0.49
LMX1A-201ENST00000294816 KCNQ3O43525 872 aa11.96□□□□□ -0.49
LMX1A-201ENST00000294816 LMOD1P29536 600 aaPredicted RBP11.96□□□□□ -0.49
LMX1A-201ENST00000294816 FAM160A1Q05DH4 1040 aa11.96□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms