RNA–Protein interactions for RNA: ENST00000292478.8

PTCD1-201, Transcript of pentatricopeptide repeat domain 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTCD1, Length 5,582 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD1-201ENST00000292478 SNRKQ9NRH2 765 aa14.74□□□□□ -0.05
PTCD1-201ENST00000292478 MAST1Q9Y2H9 1570 aa14.74□□□□□ -0.05
PTCD1-201ENST00000292478 ATP2B3Q16720 1220 aa14.74□□□□□ -0.05
PTCD1-201ENST00000292478 WTAPQ15007 396 aa14.74□□□□□ -0.05
PTCD1-201ENST00000292478 CCDC82Q8N4S0 544 aa14.74□□□□□ -0.05
PTCD1-201ENST00000292478 BRF1Q92994 677 aa14.74□□□□□ -0.05
PTCD1-201ENST00000292478 A0A1W2PP64 1363 aa14.73□□□□□ -0.05
PTCD1-201ENST00000292478 URI1O94763 535 aaPredicted RBP14.73□□□□□ -0.05
PTCD1-201ENST00000292478 ADAMTS2O95450 1211 aa14.73□□□□□ -0.05
PTCD1-201ENST00000292478 SMARCC1Q92922 1105 aaPredicted RBP14.73□□□□□ -0.05
PTCD1-201ENST00000292478 NBPF7P0C2Y1 421 aaPredicted RBP14.73□□□□□ -0.05
PTCD1-201ENST00000292478 TSHZ3Q63HK5 1081 aa14.73□□□□□ -0.05
PTCD1-201ENST00000292478 STXBP4Q6ZWJ1 553 aa14.73□□□□□ -0.05
PTCD1-201ENST00000292478 SLC26A6Q9BXS9 759 aa14.73□□□□□ -0.05
PTCD1-201ENST00000292478 YTHDC2Q9H6S0 1430 aaKnown RBP14.73□□□□□ -0.05
PTCD1-201ENST00000292478 KLF18A0A0U1RQI7 1052 aa14.73□□□□□ -0.05
PTCD1-201ENST00000292478 PER1O15534 1290 aaPredicted RBP14.73□□□□□ -0.05
PTCD1-201ENST00000292478 HLA-DOAP06340 250 aa14.73□□□□□ -0.05
PTCD1-201ENST00000292478 TRAF1Q13077 416 aa14.73□□□□□ -0.05
PTCD1-201ENST00000292478 MICU3Q86XE3 530 aa14.73□□□□□ -0.05
PTCD1-201ENST00000292478 ZBTB43O43298 467 aa14.73□□□□□ -0.05
PTCD1-201ENST00000292478 PAFAH1B1P43034 410 aa14.73□□□□□ -0.05
PTCD1-201ENST00000292478 ESR2Q92731 530 aa14.73□□□□□ -0.05
PTCD1-201ENST00000292478 GDPD2Q9HCC8 539 aa14.73□□□□□ -0.05
PTCD1-201ENST00000292478 GNAQP50148 359 aa14.72□□□□□ -0.05
PTCD1-201ENST00000292478 GBP2P32456 591 aaPredicted RBP14.72□□□□□ -0.05
PTCD1-201ENST00000292478 NGLY1Q96IV0 654 aa14.72□□□□□ -0.05
PTCD1-201ENST00000292478 CARD14Q9BXL6 1004 aa14.72□□□□□ -0.05
PTCD1-201ENST00000292478 ABCC2Q92887 1545 aa14.72□□□□□ -0.05
PTCD1-201ENST00000292478 UBA7P41226 1012 aa14.72□□□□□ -0.05
PTCD1-201ENST00000292478 HAND2P61296 217 aa14.72□□□□□ -0.05
PTCD1-201ENST00000292478 CETN1Q12798 172 aa14.72□□□□□ -0.05
PTCD1-201ENST00000292478 TMC6Q7Z403 805 aa14.72□□□□□ -0.05
PTCD1-201ENST00000292478 INTS4Q96HW7 963 aaKnown RBP14.72□□□□□ -0.05
PTCD1-201ENST00000292478 GNAT2P19087 354 aa14.71□□□□□ -0.05
PTCD1-201ENST00000292478 FBLN1P23142 703 aa14.71□□□□□ -0.05
PTCD1-201ENST00000292478 LARP6Q9BRS8 491 aaKnown RBP14.71□□□□□ -0.05
PTCD1-201ENST00000292478 ANXA1P04083 346 aa14.71□□□□□ -0.05
PTCD1-201ENST00000292478 USP8P40818 1118 aa14.71□□□□□ -0.05
PTCD1-201ENST00000292478 MTIF2P46199 727 aaKnown RBP14.71□□□□□ -0.05
PTCD1-201ENST00000292478 LMBR1LQ6UX01 489 aa14.71□□□□□ -0.05
PTCD1-201ENST00000292478 CENPHQ9H3R5 247 aa14.71□□□□□ -0.05
PTCD1-201ENST00000292478 RBM27Q9P2N5 1060 aaKnown RBP14.71□□□□□ -0.05
PTCD1-201ENST00000292478 PAXBP1Q9Y5B6 917 aa14.71□□□□□ -0.05
PTCD1-201ENST00000292478 PRIMPOLQ96LW4 560 aa14.71□□□□□ -0.05
PTCD1-201ENST00000292478 ALS2CR12Q96Q35 445 aa14.71□□□□□ -0.05
PTCD1-201ENST00000292478 F13A1P00488 732 aa14.71□□□□□ -0.06
PTCD1-201ENST00000292478 SYKP43405 635 aa14.71□□□□□ -0.06
PTCD1-201ENST00000292478 CTAGE1Q96RT6 745 aa14.71□□□□□ -0.06
PTCD1-201ENST00000292478 C6orf229H3BNL8 230 aa14.7□□□□□ -0.06
PTCD1-201ENST00000292478 FAM193AP78312 1265 aa14.7□□□□□ -0.06
PTCD1-201ENST00000292478 CHRNA2Q15822 529 aa14.7□□□□□ -0.06
PTCD1-201ENST00000292478 TAF3Q5VWG9 929 aa14.7□□□□□ -0.06
PTCD1-201ENST00000292478 CCDC171Q6TFL3 1326 aa14.7□□□□□ -0.06
PTCD1-201ENST00000292478 ST5P78524 1137 aa14.7□□□□□ -0.06
PTCD1-201ENST00000292478 CABP5Q9NP86 173 aa14.7□□□□□ -0.06
PTCD1-201ENST00000292478 TUBB4AP04350 444 aa14.7□□□□□ -0.06
PTCD1-201ENST00000292478 ENOX2Q16206 610 aaKnown RBP14.7□□□□□ -0.06
PTCD1-201ENST00000292478 EHBP1Q8NDI1 1231 aa14.7□□□□□ -0.06
PTCD1-201ENST00000292478 MRPS27Q92552 414 aaKnown RBP14.7□□□□□ -0.06
PTCD1-201ENST00000292478 SPAG1Q07617 926 aa14.69□□□□□ -0.06
PTCD1-201ENST00000292478 DCAF5Q96JK2 942 aa14.69□□□□□ -0.06
PTCD1-201ENST00000292478 ALG1Q9BT22 464 aa14.69□□□□□ -0.06
PTCD1-201ENST00000292478 PAG1Q9NWQ8 432 aa14.69□□□□□ -0.06
PTCD1-201ENST00000292478 HOXB7P09629 217 aa14.69□□□□□ -0.06
PTCD1-201ENST00000292478 CALM1P0DP23 149 aa14.69□□□□□ -0.06
PTCD1-201ENST00000292478 CALM2P0DP24 149 aa14.69□□□□□ -0.06
PTCD1-201ENST00000292478 CALM3P0DP25 149 aa14.69□□□□□ -0.06
PTCD1-201ENST00000292478 PAF1Q8N7H5 531 aa14.69□□□□□ -0.06
PTCD1-201ENST00000292478 FAM200AQ8TCP9 573 aa14.69□□□□□ -0.06
PTCD1-201ENST00000292478 NAA15Q9BXJ9 866 aaKnown RBP14.69□□□□□ -0.06
PTCD1-201ENST00000292478 EDC4Q6P2E9 1401 aaKnown RBP14.69□□□□□ -0.06
PTCD1-201ENST00000292478 RTN1Q16799 776 aa14.69□□□□□ -0.06
PTCD1-201ENST00000292478 GTPBP4Q9BZE4 634 aaKnown RBP14.69□□□□□ -0.06
PTCD1-201ENST00000292478 RFC4P35249 363 aa14.69□□□□□ -0.06
PTCD1-201ENST00000292478 ZMYM4Q5VZL5 1548 aa14.69□□□□□ -0.06
PTCD1-201ENST00000292478 PRKCSHP14314 528 aaPredicted RBP14.68□□□□□ -0.06
PTCD1-201ENST00000292478 EZRP15311 586 aaKnown RBP14.68□□□□□ -0.06
PTCD1-201ENST00000292478 NMIQ13287 307 aaPredicted RBP14.68□□□□□ -0.06
PTCD1-201ENST00000292478 SNW1Q13573 536 aaKnown RBP14.68□□□□□ -0.06
PTCD1-201ENST00000292478 Q6ZUG5 572 aa14.68□□□□□ -0.06
PTCD1-201ENST00000292478 IP6K1Q92551 441 aa14.68□□□□□ -0.06
PTCD1-201ENST00000292478 TBX22Q9Y458 520 aa14.68□□□□□ -0.06
PTCD1-201ENST00000292478 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP14.68□□□□□ -0.066e-6■□□□□ 9.1
PTCD1-201ENST00000292478 RNF113AO15541 343 aaKnown RBP14.68□□□□□ -0.06
PTCD1-201ENST00000292478 NBPF6Q5VWK0 638 aa14.68□□□□□ -0.06
PTCD1-201ENST00000292478 USP48Q86UV5 1035 aa14.68□□□□□ -0.06
PTCD1-201ENST00000292478 NBPF5PQ86XG9 351 aaPredicted RBP14.68□□□□□ -0.06
PTCD1-201ENST00000292478 PLEKHM2Q8IWE5 1019 aa14.68□□□□□ -0.06
PTCD1-201ENST00000292478 NBPF4Q96M43 638 aa14.68□□□□□ -0.06
PTCD1-201ENST00000292478 CYP7A1P22680 504 aa14.68□□□□□ -0.06
PTCD1-201ENST00000292478 RAB3GAP1Q15042 981 aa14.68□□□□□ -0.06
PTCD1-201ENST00000292478 LUZP1Q86V48 1076 aa14.68□□□□□ -0.06
PTCD1-201ENST00000292478 NECAB1Q8N987 351 aa14.68□□□□□ -0.06
PTCD1-201ENST00000292478 BIN1O00499 593 aa14.68□□□□□ -0.06
PTCD1-201ENST00000292478 TAX1BP1Q86VP1 789 aa14.68□□□□□ -0.06
PTCD1-201ENST00000292478 UBA5Q9GZZ9 404 aa14.68□□□□□ -0.06
PTCD1-201ENST00000292478 SLC4A4Q9Y6R1 1079 aa14.68□□□□□ -0.06
PTCD1-201ENST00000292478 CCDC40Q4G0X9 1142 aa14.68□□□□□ -0.06
PTCD1-201ENST00000292478 IFIT1BQ5T764 474 aaKnown RBP14.68□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 90.4 ms